Contig 005839:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF049I10-                                                 GACGTTTGATTTGACCGCCACG
                      ____________________________________________________________
consensus                                                   GACGTTTGATTTGACCGCCACG
 
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JMSF049I10-           GAAGAGAATTGGAAAGAAGAAGAAGAAGGCGTAGGGCACGAGAAGCTGGATTCGTTGACC
                      ____________________________________________________________
consensus             GAAGAGAATTGGAAAGAAGAAGAAGAAGGCGTAGGGCACGAGAAGCTGGATTCGTTGACC
 
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JMSF049I10-           AAAATCACGCACCCTTTGAAAACTCCGAAACAGCCTCGTCTTCTGCAAATTTCTTTCAAT
                      ____________________________________________________________
consensus             AAAATCACGCACCCTTTGAAAACTCCGAAACAGCCTCGTCTTCTGCAAATTTCTTTCAAT
 
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JMSF049I10-           TTTCCCCTCACTTTATTATATTCCATCATTATTTAATCAATTACTACGTATTATTTACTA
                      ____________________________________________________________
consensus             TTTCCCCTCACTTTATTATATTCCATCATTATTTAATCAATTACTACGTATTATTTACTA
 
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JMSF049I10-           ATTTCGCCGCTTCTTTACACTTTCTCAATGCTTCACACGCCTATCCTCCCTCGTCTTCTC
                      ____________________________________________________________
consensus             ATTTCGCCGCTTCTTTACACTTTCTCAATGCTTCACACGCCTATCCTCCCTCGTCTTCTC
 
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JMSF049I10-           CATTGACTCGGTTCCGGCACCCCCGCCGGAGAATAAAAGGAGAAAAAAGATTAGTCAAGG
                      ____________________________________________________________
consensus             CATTGACTCGGTTCCGGCACCCCCGCCGGAGAATAAAAGGAGAAAAAAGATTAGTCAAGG
 
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JMSF049I10-           TGTGCGTGGAGGGACCCAGATCAGTTCTTGAGACAGGTTTCGAAAATTATTTGTTCAATT
                      ____________________________________________________________
consensus             TGTGCGTGGAGGGACCCAGATCAGTTCTTGAGACAGGTTTCGAAAATTATTTGTTCAATT
 
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JMSF049I10-           GGGGGAGGACCGGAGGTGAAGTTGTTGAAAATTGGATAATATTGAATTTTTGGAAGGAGA
rJMSF049I10+                                          TGGATAATATTGNATTTTTGGAAGGAGA
rJMSF050I10+                                                       ATTTTTGGAAGGAGA
                      ____________________________________________________________
consensus             GGGGGAGGACCGGAGGTGAAGTTGTTGAAAATTGGATAATATTGAATTTTTGGAAGGAGA
 
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JMSF049I10-           TAGGAGTATGTCTGGAGCCAAAGATCAGTTAGAGATCAAGTTTAGATTGATTGATGGAAC
rJMSF049I10+          TAGGAGTATGTCTGGAGCCAAAGATCAGTTAGAGATCAAGTTTAGATTGATTGATGGAAC
rJMSF050I10+          TAGGAGTATGTCTGGAGCCAAAGATCAGTTAGAGATCAAGTTTAGATTGATTGATGGAAC
                      ____________________________________________________________
consensus             TAGGAGTATGTCTGGAGCCAAAGATCAGTTAGAGATCAAGTTTAGATTGATTGATGGAAC
 
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JMSF049I10-           AGATATAGGGCCCAAAAGTTTTTCTGCGGCTACCAGTGTTGCAACCTTGAAGGAGAACAT
rJMSF049I10+          AGATATAGGGCCCAAAAGTTTTTCTGCGGCTACCAGTGTTGCAACCTTGAAGGAGAACAT
rJMSF050I10+          AGATATAGGGCCCAAAAGTTTTTCTGCGGCTACCAGTGTTGCAACCTTGAAGGAGAACAT
                      ____________________________________________________________
consensus             AGATATAGGGCCCAAAAGTTTTTCTGCGGCTACCAGTGTTGCAACCTTGAAGGAGAACAT
 
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JMSF049I10-           ACTTGCTCAATGGCCTAAAGAGAAGGAAAATGGCCCAAGAGCCGTAAAAGATGTCAGGTT
rJMSF049I10+          ACTTGCTCAATGGCCTAAAGAGAAGGAAAATGGCCCAAGAGCCGTAAAAGATGTCAAGTT
rJMSF050I10+          ACTTGCTCAATGGCCTAAAGAGAAGGAAAATGGCCCAAGAGCCGTAAAAGATGTCAAGTT
                      ____________________________________________________________
consensus             ACTTGCTCAATGGCCTAAAGAGAAGGAAAATGGCCCAAGAGCCGTAAAAGATGTCAAGTT
 
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JMSF049I10-           AATCAGCGCGGGGAGAATATTAGAGAACAACAAAACAGTGGGG                 
rJMSF049I10+          AATCAGCGCGGGGAGAATATTAGAGAACAACAAAACAGTGGGGGAGTGCCAGAGCCCGTT
rJMSF050I10+          AATCAGCGCGGGGAGAATATTAGAGAACAACAAAACAGTGGGGGAGTGCCAGAGCCCGTT
                      ____________________________________________________________
consensus             AATCAGCGCGGGGAGAATATTAGAGAACAACAAAACAGTGGGGGAGTGCCAGAGCCCGTT
 
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rJMSF049I10+          GTGTGACATTCCTGGAGGAGTCACAACAATGCATGTTGTCATTCAACCACCACCTCAGGA
rJMSF050I10+          GTGTGACATTCCTGGAGGAGTCACAACAATGCATGTTGTCATTCAACCACCACCTCAGGA
                      ____________________________________________________________
consensus             GTGTGACATTCCTGGAGGAGTCACAACAATGCATGTTGTCATTCAACCACCACCTCAGGA
 
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rJMSF049I10+          GAAAGAAAAGAAAATGGCAAATGACCCAAAGCAGAACAGATGCGTTTGTGTCATACTATA
rJMSF050I10+          GAAAGAAAAGAAAATGGCAAATGACCCAAAGCAGAACAGATGCGTTTGTGTCATACTATA
                      ____________________________________________________________
consensus             GAAAGAAAAGAAAATGGCAAATGACCCAAAGCAGAACAGATGCGTTTGTGTCATACTATA
 
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rJMSF049I10+          AACTACATTTCCAACAAAGGGGACGGATTCTTTGCAGGTCCGTAGGATTTGTTCCCTCTT
rJMSF050I10+          AACTACATTTCCAACAAAGGGGACGGATTCTTTGCAGGTCCGTAGGATTTGTTCCCTCTT
                      ____________________________________________________________
consensus             AACTACATTTCCAACAAAGGGGACGGATTCTTTGCAGGTCCGTAGGATTTGTTCCCTCTT
 
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rJMSF049I10+          AATAGGAACGAAGTCTCGTAAATTTCTCCTAAAAGAATTAAGGACCTTGCAGATAAAGAA
rJMSF050I10+          AATAGGAACGAAGTCTCGTAAATTTCTCCTAAAAGAATTAAGGACCTTGCAGATAAAGAA
                      ____________________________________________________________
consensus             AATAGGAACGAAGTCTCGTAAATTTCTCCTAAAAGAATTAAGGACCTTGCAGATAAAGAA
 
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rJMSF049I10+          TGTACGAATCGGTATGAGCACAGAAGTTGAGGACTTCGTGATCAGAAGCCGGTGGCCTTA
rJMSF050I10+          TGTACGAATCGGTATGAGCACAGAAGTTGAGGACTTCGTGATCAGAAGCCGGTGGCCTTA
                      ____________________________________________________________
consensus             TGTACGAATCGGTATGAGCACAGAAGTTGAGGACTTCGTGATCAGAAGCCGGTGGCCTTA
 
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rJMSF049I10+          ACTTCCATCTGAGGGATTGCGTTCTACTGTTCTTGTTCTGATTGATGTGTATTGCTAGTT
rJMSF050I10+          ACTTCCATCTGAGGGATTGCGTTCTACTGTTCTTGTTCTGATTGATGTGTATTGCTAGTT
                      ____________________________________________________________
consensus             ACTTCCATCTGAGGGATTGCGTTCTACTGTTCTTGTTCTGATTGATGTGTATTGCTAGTT
 
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rJMSF049I10+          TCTTCTCGTACACCATTTTAGCATTTGATGAATTTTGTTTCTGTTAAGGTTTCTCTACTC
rJMSF050I10+          TCTTCTCGTACACCATTTTAGCATTTGATGAATTTTGTTTCTGTTAAGGTTTCTCTACTC
                      ____________________________________________________________
consensus             TCTTCTCGTACACCATTTTAGCATTTGATGAATTTTGTTTCTGTTAAGGTTTCTCTACTC
 
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rJMSF049I10+          CCCATATTACAGGCTTGTGAGCTCTGAGCATATGATATTGTCCTGCCCGTCGAACCAATT
rJMSF050I10+          CCCATATTACAGGCTTGTGAGCTCTGAGCATATGATATTGTCCTGCCCGTCGAACCAATT
                      ____________________________________________________________
consensus             CCCATATTACAGGCTTGTGAGCTCTGAGCATATGATATTGTCCTGCCCGTCGAACCAATT