| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF004J23 | Sequence | 349 | 004940 (4) | 422 | 005835 (4) | ||||||
| JMSF035N12 | Sequence | 592 | 004994 (17) | ref|XP_009594970.1| | 9e-54 | PREDICTED: 21 kDa protein-like [Nicotiana tomentosiformis] | 658 | 005835 (4) | ref|XP_009609058.1| | 2e-24 | PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X2 |
| JMSF050C05 | Sequence | 608 | 004940 (4) | dbj|BAF46306.1| | 2e-43 | ataxin-2 related protein [Ipomoea nil] | 738 | 005835 (4) | ref|XP_009609058.1| | 2e-35 | PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X2 |
| JMSF050F18 | Sequence | 729 | 004940 (4) | dbj|BAF46306.1| | 1e-58 | ataxin-2 related protein [Ipomoea nil] | 779 | 005835 (4) | ref|XP_009609056.1| | 7e-35 | PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X1 |
This contig is upended
. : . : . : . : . : . :
rJMSF050C05+ TTCAGATGGTTCCTTCTAC
____________________________________________________________
consensus TTCAGATGGTTCCTTCTAC
. : . : . : . : . : . :
rJMSF050C05+ TACCCAACAAATGCGTCTCCTGTTCAACACATGCATGGCATGCCTGTGGGTGTTGGGATT
____________________________________________________________
consensus TACCCAACAAATGCGTCTCCTGTTCAACACATGCATGGCATGCCTGTGGGTGTTGGGATT
. : . : . : . : . : . :
rJMSF050C05+ GGACCATCCTATGCTGGACATCAGCCGGTTATGTTTAATCATCAGGTTGCACCAACGCCG
____________________________________________________________
consensus GGACCATCCTATGCTGGACATCAGCCGGTTATGTTTAATCATCAGGTTGCACCAACGCCG
. : . : . : . : . : . :
rJMSF050F18+ CAGCCATATTTTCATCCAAATGGACCTCAGTATGGGCAGCAGATGATAATTGGCCACCCT
rJMSF035N12+ CAGCCATATTTTCATCCAAATGGACCTCAGTATGGGCAGCAGATGATAATTGGCCACCCT
rJMSF050C05+ CAGCCATATTTTCATCCAAATGGACCTCAGTATGGGCAGCAGATGATAATTGGCCACCCT
____________________________________________________________
consensus CAGCCATATTTTCATCCAAATGGACCTCAGTATGGGCAGCAGATGATAATTGGCCACCCT
. : . : . : . : . : . :
rJMSF050F18+ CGGCAAGTTGTCTACATGCCAACCTACCCTCCTGAAATGCCATACAGGAGAGGAGATTTT
rJMSF035N12+ CGGCAAGTTGTCTACATGCCAACCTACCCTCCTGAAATGCCATACAGGAGAGGAGATTTT
rJMSF050C05+ CGGCAAGTTGTCTACATGCCAACCTACCCTCCTGAAATGCCATACAGGAGAGGAGATTTT
____________________________________________________________
consensus CGGCAAGTTGTCTACATGCCAACCTACCCTCCTGAAATGCCATACAGGAGAGGAGATTTT
. : . : . : . : . : . :
rJMSF050F18+ TAACTGGACAATTGACACAATATATCCTGCAACTTCTCAACGCATTGCTGACTGATGTAG
rJMSF035N12+ TAACTGGACAATTGACACAATATATCCTGCAACTTCTCAACGCATTGCTGACTGATGTAG
rJMSF004J23+ TCTCAACGCATTGCTGACTGATGTAG
rJMSF050C05+ TAACTGGACAATTGACACAATATATCCTGCAACTTCTCAACGCATTGCTGACTGATGTAG
____________________________________________________________
consensus TAACTGGACAATTGACACAATATATCCTGCAACTTCTCAACGCATTGCTGACTGATGTAG
. : . : . : . : . : . :
rJMSF050F18+ GAATAATTTTTTACATTAGACTGCTCAGAACAGTTCTTTAGGGTGAACACCGGGATTGGA
rJMSF035N12+ GAATAATNTTTTACATTAGACTGCTCAGAACAGTTCTNTAGGGTGAACACCGGGATTGGA
rJMSF004J23+ GAATAATTTTTTACATTAGACTGCTCAGAACAGTTCTTTAGGGTGAACACCGGGATTGGA
rJMSF050C05+ GAATAATTTTTTACATTAGACTGCTCAGAACAGTTCTTTAGGGTGAACACCGGGATTGGA
____________________________________________________________
consensus GAATAATTTTTTACATTAGACTGCTCAGAACAGTTCTTTAGGGTGAACACCGGGATTGGA
. : . : . : . : . : . :
rJMSF050F18+ TAATGTATCCAGCCAACAATTCTCTAAGCATTCTGGGCAATGTGGAAAATCAGTCATTTG
rJMSF035N12+ TAANGTATCCAGCCAACAATTCTCTAAGCATTCTGGGCAATGTGGAAAATCAGTCATTTG
rJMSF004J23+ TAATGTATCCAGCCAACAATTCTCTAAGCATTCTGGGCAATGTGGAAAATCAGTCATTTG
rJMSF050C05+ TAATGTATCCAGCCAACAATTCTCTAAGCATTCTGGGCAATGTGGAAAATCAGTCATTTG
____________________________________________________________
consensus TAATGTATCCAGCCAACAATTCTCTAAGCATTCTGGGCAATGTGGAAAATCAGTCATTTG
. : . : . : . : . : . :
rJMSF050F18+ AGTCATCATATAATGGTTCTGTAGGATTTAAGCTATAGCTTGATGGAGTCTCTCAAGTGT
rJMSF035N12+ AGTCATCATATAATGGTTCTGTAGGATTTAAGCTATAGCTTGATGGAGTCTCTCAAGTGT
rJMSF004J23+ AGTCATCATATAATGGTTCTGTAGGATTTAAGCTATAGCTTGATGGAGTCTCTCAAGTGT
rJMSF050C05+ AGTCATCATATAATGGTTCTGTAGGATTTAAGCTATAGCTTGATGGAGTCTCTCAAGTGT
____________________________________________________________
consensus AGTCATCATATAATGGTTCTGTAGGATTTAAGCTATAGCTTGATGGAGTCTCTCAAGTGT
. : . : . : . : . : . :
rJMSF050F18+ TCTTTATCACCGATTTTAATCATCCCCAAAATTGGCTAGGTAGGTTAAGTTTATCTTATA
rJMSF035N12+ TCTTTATCACCGATTTTAATCATCCCCAAAATTGGCTAGGTAGGTTAAGTTTATCTTATA
rJMSF004J23+ TCTTTATCACCGATTTTAATCATCCCCAAAATTGGCTAGGTAGGTTAAGTTTATCTTATA
rJMSF050C05+ TCTTTATCACCGATTTTAATCATCCCCAAAATTGGCTAGGTAGGTTAAGTTTATCTTATA
____________________________________________________________
consensus TCTTTATCACCGATTTTAATCATCCCCAAAATTGGCTAGGTAGGTTAAGTTTATCTTATA
. : . : . : . : . : . :
rJMSF050F18+ CCATGTTGTACAAGTTCATCTCCCCGGCTAAAGCTGTGGTTGCTGATGCTTTGCACTTCG
rJMSF035N12+ CCATGTTGTACAAGTTCATCTCCCCGGCTAAAGCTGTGGTTGCTGATGCTTTGCACTTCG
rJMSF004J23+ CCATGTNGTACAAGTTCATCTCCCCGGCTAAAGCTGTGGTTGCTGATGCTTTNCACTTCG
rJMSF050C05+ CCATGTTGTACAAGTTCATCTCCCCGGCTAAAGCTGTGGTTGCTGATGCTTTGCACTTCG
____________________________________________________________
consensus CCATGTTGTACAAGTTCATCTCCCCGGCTAAAGCTGTGGTTGCTGATGCTTTGCACTTCG
. : . : . : . : . : . :
rJMSF050F18+ ACTTTAGTTAACCTTTCTTATGCTGTTGCTGAATTTACTTTGTCTCTTA-CAAGTGTCAT
rJMSF035N12+ ACTTTAGTTAACCTTTCTTATGCTGTTGCTGAATTTA
rJMSF004J23+ ACTTTAGTTAACCTTTCTTATGCTGTTGCTGAATTTACTTTGTCTCTTACCAAGTGTCAT
rJMSF050C05+ ACTTTAGTTAACCTTTCTTATGCTGTTGCTGAATTTACTTTGTCTCTTA-CAAGTGTCAT
____________________________________________________________
consensus ACTTTAGTTAACCTTTCTTATGCTGTTGCTGAATTTACTTTGTCTCTTA-CAAGTGTCAT
. : . : . : . : . : . :
rJMSF050F18+ AATGTAAACAACCGTGCCGTCTTTGTTAGATTCATTGTGAATTGGGAT
rJMSF004J23+ AATGTAAACAACCGTGCCGTCTTTGTTAGATTCATT
rJMSF050C05+ AATGTAAACAACCGTGCCGTCTTTGTTAGATTCATTGTGAATTGGGATTGGTCATTACAA
____________________________________________________________
consensus AATGTAAACAACCGTGCCGTCTTTGTTAGATTCATTGTGAATTGGGATTGGTCATTACAA