| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF030J18 | Sequence | 561 | 011571 (3) | ref|XP_009797476.1| | 8e-41 | PREDICTED: subtilisin-like protease [Nicotiana sylvestris] | 605 | 005834 (3) | gb|ACA64705.1| | 3e-82 | subtilase, partial [Nicotiana tabacum] |
| JMSF006B24 | Sequence | 274 | 002437 (5) | ref|XP_009788012.1| | 8e-30 | PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana sylvestris] | 493 | 005834 (3) | ref|XP_009771925.1| | 1e-50 | PREDICTED: subtilisin-like protease [Nicotiana sylvestris] |
| JMSF049L05 | Sequence | 670 | 022263 | gb|ACA64705.1| | 3e-91 | subtilase, partial [Nicotiana tabacum] | 740 | 005834 (3) | gb|ACA64705.1| | 5e-88 | subtilase, partial [Nicotiana tabacum] |
This contig is upended
. : . : . : . : . : . :
rJMSF049L05+ CCATGATGACCACCGCGATCA
____________________________________________________________
consensus CCATGATGACCACCGCGATCA
. : . : . : . : . : . :
rJMFF030J18+ CGCCACGCCGC
rJMSF049L05+ CGGTAGACAACATCGGAAAACCAATCAAAGACTCCGACGACAACGCCGTCGCCACGCCGC
____________________________________________________________
consensus CGGTAGACAACATCGGAAAACCAATCAAAGACTCCGACGACAACGCCGTCGCCACGCCGC
. : . : . : . : . : . :
rJMFF030J18+ TGGACATGGGTGCCGGCCTGGTTGATCCCAACGCCGCACTCGATCCCGGCCTAGTTTACG
rJMSF049L05+ TGGTTATGGGTGCCGGTCTGGTTAATCCCAACGCCGCACTCGATCCCGGCCTAGTTTACG
____________________________________________________________
consensus TGGTTATGGGTGCCGGTCTGGTTGATCCCAACGCCGCACTCGATCCCGGCCTAGTTTACG
. : . : . : . : . : . :
rJMSF006B24+ CACANGACTACGNTAATCTCCTCTGCGCCATGANCTTCACAGAAGCTCAAT
rJMFF030J18+ ACGCCACTCCACAAGANTACGTTAATCTCCTNTGCGCCATGAACTTCACAGAAGCTCAAT
rJMSF049L05+ ACGCCACCTCACAAGACTACGTTAATCTCCTCTGCGCCATGAACTTCACAGAAGCTCAAT
____________________________________________________________
consensus ACGCCACTTCACAAGACTACGTTAATCTCCTCTGCGCCATGAACTTCACAGAAGCTCAAT
. : . : . : . : . : . :
rJMSF006B24+ TCCAAAGCATAGCAAGATCTTCAGCCACCCATAACTGCTCCAACTCAAACCCAGATCTAA
rJMFF030J18+ TCCAAAGCATAGCAAGATCTTCAGCCACCCATAACTGCTCCAACTCAAACCCAGATNTAA
rJMSF049L05+ TCCAAACCATTGCCAGATCCTCAGCCACTAATAACTGCTCCAACTCAAACCCAGATCTAA
____________________________________________________________
consensus TCCAAAGCATAGCAAGATCTTCAGCCACCCATAACTGCTCCAACTCAAACCCAGATCTAA
. : . : . : . : . : . :
rJMSF006B24+ ATTACCCATCCTTCATCGCTCTATACCCTCTCGGAGGAGATAACGGAGTTTATGACTGGA
rJMFF030J18+ ATTACCCATCCTTCATCGCTCTATACCCTCTCGGAGGAGATAACGGAGTTTATGACTGGA
rJMSF049L05+ ATTATCCATCTTTCATTGCTCTATACCCTCTCGGAGGAGATAACGGAGTTTATGACTGGA
____________________________________________________________
consensus ATTACCCATCCTTCATCGCTCTATACCCTCTCGGAGGAGATAACGGAGTTTATGACTGGA
. : . : . : . : . : . :
rJMSF006B24+ TGGTGCAGACATTCAAGAGAACTCTGACGAATGTTGGTTCCGGCGCCGCTACATACAAGG
rJMFF030J18+ TGGTGCAGACATTCAAGAGAACTCTGACGAATGTTGGTTCCGGCGCCGNTACATACAAGG
rJMSF049L05+ CGGTGCAGACATTCAAGAGAACTCTCACAAACGTTGGTCCCGGTGCGGCTACATACAAGG
____________________________________________________________
consensus TGGTGCAGACATTCAAGAGAACTCTGACGAATGTTGGTTCCGGCGCCGCTACATACAAGG
. : . : . : . : . : . :
rJMSF006B24+ CAAAGCTGGAAGTTCCCAAGAACTCCACAATCTCAGTGTCTCCTACAACATTGGTGTTTC
rJMFF030J18+ CAAAGCTGGAAGTTCCCAAGAACTCCACAATCTCAGTGTCTCCTACAACATTGGTG-TTT
rJMSF049L05+ CAAAGCTGGAAGTTCCCAAGAACTCCACAATCTCTGTGTCTCCTACAACATTGGTG-TTC
____________________________________________________________
consensus CAAAGCTGGAAGTTCCCAAGAACTCCACAATCTCAGTGTCTCCTACAACATTGGTG-TTC
. : . : . : . : . : . :
rJMSF006B24+ ACGAAGAAGATGGAGAAGCAGAGCTACAGTCTGAGGATACGGTACAGAGGCGATGAGAAT
rJMFF030J18+ ACGAAGAAGATGGAGAAGCAGAGTTACAGTCTGAGGATACGGTACAGAGGCGATGAGAAT
rJMSF049L05+ ACGAAGAAGAAGGAGAAACAGAGTTACAGTCTGAGGATACGGTACAGAGGCGATGAGAAT
____________________________________________________________
consensus ACGAAGAAGATGGAGAAGCAGAGTTACAGTCTGAGGATACGGTACAGAGGCGATGAGAAT
. : . : . : . : . : . :
rJMSF006B24+ CAGAGCAAGAATGTTGGTTCGATTACATGGGTAGAAGTGAATGGNAATCATAAGGTTAGG
rJMFF030J18+ CAGAGCAAGAATGTTGGTTCGATTACATGGGTAGAAGTGAATGGTAATCATAAGGTTAGG
rJMSF049L05+ CAGAGCAAGAATGTTGGTTCGATTACATGGGTGGAAGTGAATGGGTATCATAAGGTCAGG
____________________________________________________________
consensus CAGAGCAAGAATGTTGGTTCGATTACATGGGTAGAAGTGAATGGTAATCATAAGGTTAGG
. : . : . : . : . : . :
rJMSF006B24+ AGTCCAATTGTTGTGTCAAATACAGTAGAGGTCTGGGAATGAA
rJMFF030J18+ AGTCCAATTGTTGTGTCAAATACAGTAGAGGTCTGGGAATGAA
rJMSF049L05+ AGTCCAATTGTTGTTTCAAATACAGTAGAGGTCTGGGAATGAAGATAAGCAAGCAAGATC
____________________________________________________________
consensus AGTCCAATTGTTGTGTCAAATACAGTAGAGGTCTGGGAATGAAGATAAGCAAGCAAGATC
. : . : . : . : . : . :
rJMSF049L05+ ATGTTGTCCTGTACTGAGGTGTTAATTGTTAAATGTTCCAAATAAACAAAATGTAAGGAA
____________________________________________________________
consensus ATGTTGTCCTGTACTGAGGTGTTAATTGTTAAATGTTCCAAATAAACAAAATGTAAGGAA
. : . : . : . : . : . :
rJMSF049L05+ CGAGAAGAATGTAAGGAACACGAGAAGGAGCATATATATACTTTATGCTCAATAAAGTGT
____________________________________________________________
consensus CGAGAAGAATGTAAGGAACACGAGAAGGAGCATATATATACTTTATGCTCAATAAAGTGT