Contig 005830:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF012D21+                                                       TCAGTCAAAGGCAAT
rJMSF049E09+                                                       TCAGTCAAAGGCAAT
                      ____________________________________________________________
consensus                                                          TCAGTCAAAGGCAAT
 
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rJMSF012D21+          CAAAACTTAGTTTCTTCCATGTGCAACAGCAATTGCAGAATTTTTGGCTTTCCCTTAAAT
rJMSF049E09+          CAAAACTTAGTTTCTTCCATGTGCAACAGCAATTGCAGAATTTTTGGCTTTCCCTTAAAT
                      ____________________________________________________________
consensus             CAAAACTTAGTTTCTTCCATGTGCAACAGCAATTGCAGAATTTTTGGCTTTCCCTTAAAT
 
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rJMSF012D21+          GAGGGAAGAAGTGGTATAACTAAAGACAACAATCCAATTCAAGCTACAACCTCACTTGGC
rJMSF049E09+          GAGGGAAGAAGTGGTATAACTAAAGACAACAATCCAATTCAAGCTACAACCTCACTTGGC
                      ____________________________________________________________
consensus             GAGGGAAGAAGTGGTATAACTAAAGACAACAATCCAATTCAAGCTACAACCTCACTTGGC
 
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rJMSF012D21+          CATGAGATCACTCCTTTTCCTTGCAGTGAAGGACAGTTACATTTAAGACCTCCACTGATT
rJMSF049E09+          CATGAGATCACTCCTTTTCCTTGCAGTGAAGGACAGTTACATTTAAGACCTCCACTGATT
                      ____________________________________________________________
consensus             CATGAGATCACTCCTTTTCCTTGCAGTGAAGGACAGTTACATTTAAGACCTCCACTGATT
 
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rJMSF012D21+          ACTAGTGTTGCGGGAAGCAACTATACCAATGTAAATGATCTCTATCCTGCAAGAGATGCT
rJMSF049E09+          ACTAGTGTTGCGGGAAGCAACTATACCAATGTAAATGATCTCTATCCTGCAAGAGATGCT
                      ____________________________________________________________
consensus             ACTAGTGTTGCGGGAAGCAACTATACCAATGTAAATGATCTCTATCCTGCAAGAGATGCT
 
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rJMSF012D21+          CTTCTTGATATAGCTCTCTAACAGCTTAATTGATACTAGCAGAAAACAGAATGGAAGCTT
rJMSF049E09+          CTTCTTGATATAGCTCTCTAACAGCTTAATTGATACTAGCAGAAAACAGAATGGAAGCTT
                      ____________________________________________________________
consensus             CTTCTTGATATAGCTCTCTAACAGCTTAATTGATACTAGCAGAAAACAGAATGGAAGCTT
 
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rJMSF012D21+          ACTCAAGTTTGAAGAGTGTTTTGCAATGATACTAGCAGAAAGCACTTGATATATCACTTT
rJMSF049E09+          ACTCAAGTTTGAAGAGTGTTTTGCAATGATACTAGCAGAAAGCACTTGATATATCACTTT
                      ____________________________________________________________
consensus             ACTCAAGTTTGAAGAGTGTTTTGCAATGATACTAGCAGAAAGCACTTGATATATCACTTT
 
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rJMSF012D21+          TTTAGGGATGCAATGATACAGAATGGTGTTTTGTAAGCCGAAAAAGTTTGAAGAGTGTTT
rJMSF049E09+          TTTAGGGATGCAATGATACAGAATGGTGTTTTGTAAGCCGAAAAAGTTTGAAGAGTGTTT
                      ____________________________________________________________
consensus             TTTAGGGATGCAATGATACAGAATGGTGTTTTGTAAGCCGAAAAAGTTTGAAGAGTGTTT
 
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rJMSF012D21+          TGCAAGTGTGATGGGGATGATCTGAAGCATACACAT-----ATAATATAACAACTGAAGG
rJMSF049E09+          TGCAAGTGTGATGGGGATGATCTGAAGCATACACATGCCAGATAATATAACAACTGAAGG
                      ____________________________________________________________
consensus             TGCAAGTGTGATGGGGATGATCTGAAGCATACACATGCCAGATAATATAACAACTGAAGG
 
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rJMSF012D21+          AAAGTGTGGTTGCAGTGAGTGAGTAACAAGGTTGCTGACAATGAATCAGAGACTTGCTGG
rJMSF049E09+          AAAGTGTGGTTGCAGTGAGTGAGTAACAAGGTTGCTGACAATGAATCAGAGACTTGCTGG
                      ____________________________________________________________
consensus             AAAGTGTGGTTGCAGTGAGTGAGTAACAAGGTTGCTGACAATGAATCAGAGACTTGCTGG
 
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rJMSF012D21+          TATGATAATTTTATCATAGCTTTCAGATGTCTTTCCTGTGTAACTACTTTTTTATTTTTA
rJMSF049E09+          TATGATAATTTTATCATAGCTTTCAGATGTCTTTCCTGTGTAACTACTTTTTTATTTTTA
                      ____________________________________________________________
consensus             TATGATAATTTTATCATAGCTTTCAGATGTCTTTCCTGTGTAACTACTTTTTTATTTTTA
 
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rJMSF012D21+          TTTTTGTGATGTGAATTAACTCCTAGAGTCTTGAAAAGAATGTTGTGTGGTACCCAT   
rJMSF049E09+          TTTTTGTGATGTGAATTAACTCCTAGAGTC-TGAAAAGAATGTTGTGTGGTACCCATGGA
                      ____________________________________________________________
consensus             TTTTTGTGATGTGAATTAACTCCTAGAGTCTTGAAAAGAATGTTGTGTGGTACCCATGGA