Contig 005824:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN008H03Sequence623005824 (5)ref|XP_006354611.1|3e-107PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like [Solanum tubero
JMFN032M12Sequence607005824 (5)ref|XP_006354611.1|1e-111PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like [Solanum tubero
JMSF020P18Sequence684009548 (3)ref|XP_004229507.1|8e-64PREDICTED: protoheme IX farnesyltransferase, mitochondrial [Solanum lycopersicu743005824 (5)ref|XP_006354611.1|2e-105PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like [Solanum tubero
JMSF028B05Sequence675009548 (3)ref|XP_004229507.1|7e-64PREDICTED: protoheme IX farnesyltransferase, mitochondrial [Solanum lycopersicu746005824 (5)ref|XP_006354611.1|4e-106PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like [Solanum tubero
JMSF047L12Sequence688009548 (3)ref|XP_004229507.1|2e-61PREDICTED: protoheme IX farnesyltransferase, mitochondrial [Solanum lycopersicu739005824 (5)ref|XP_006354611.1|9e-83PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like [Solanum tubero

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032M12-                                                               TCGGTGCT
                      ____________________________________________________________
consensus                                                                 TCGGTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032M12-           ATCCCACCACTTCTTGGGTGGGCTGCAGCATCTGGTCAGGTGTCGCTAAATTCCATGATT
JMFN008H03-                          GGGTGGGCTGCAGCATCTGGTCAGGTGTCGCTAAATTCCATGATT
rJMSF028B05+                         GGGTGGGCTGCAGCATCTGGTCAGGTGTCGCTAAATTCCATGATT
rJMSF020P18+                         GGGTGGGCTGCAGCATCTGGTCAGGTGTCGCTAAATTCCATGATT
                      ____________________________________________________________
consensus             ATCCCACCACTTCTTGGGTGGGCTGCAGCATCTGGTCAGGTGTCGCTAAATTCCATGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032M12-           CTCCCGGCTGCTCTATATTTTTGGCAAATACCCCATTTCATGGCCTTAGCATACTTGTGC
JMFN008H03-           CTCCCGGCTGCTCTATATTTTTGGCAAATACCCCATTTCATGGCCTTAGCATACTTGTGC
rJMSF028B05+          CTCCCGGCTGCTCTATATTTTTGGCAAATACCCCATTTCATGGCCTTAGCATACTTGTGC
rJMSF020P18+          CTCCCGGCTGCTCTATATTTTTGGCAAATACCCCATTTCATGGCCTTAGCATACTTGTGC
rJMSF047L12+                                                   GGCCTTAGCATACTTGTGC
                      ____________________________________________________________
consensus             CTCCCGGCTGCTCTATATTTTTGGCAAATACCCCATTTCATGGCCTTAGCATACTTGTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032M12-           CGCAAGGATTATGCAGATGGAGGGTTTAGGATGTTTTCCCTGGCTGATGCTTCTGGTCTG
JMFN008H03-           CGCAAGGATTATGCAGATGGAGGGTTTAGGATGTTTTCCCTGGCTGATGCTTCTGGTCTG
rJMSF028B05+          CGCAAGGATTATGCAGATGGAGGGTTTAGGATGTTTTCCCTGGCTGATGCTTCTGGTCTG
rJMSF020P18+          CGCAAGGATTATGCAGATGGAGGGTTTAGGATGTTTTCCCTGGCTGATGCTTCTGGTCTG
rJMSF047L12+          CGCAAGGATTATGCAGATGGAGGGTTTAGGATGTTTTCCCTGGCTGATGCTTCTGGTCTG
                      ____________________________________________________________
consensus             CGCAAGGATTATGCAGATGGAGGGTTTAGGATGTTTTCCCTGGCTGATGCTTCTGGTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032M12-           AGAACAGCTTCAGTGTCCTTAAGGAATTGCCTGTATTTACTTCCACTTGGTTATCTAGCC
JMFN008H03-           AGAACAGCTTCAGTGTCCTTAAGGAATTGCCTGTATTTACTTCCACTTGGTTATCTAGCC
rJMSF028B05+          AGAACAGCTTCAGTGTCCTTAAGGAATTGCCTGTATTTACTTCCACTTGGTTATCTAGCC
rJMSF020P18+          AGAACAGCTTCAGTGTCCTTAAGGAATTGCCTGTATTTACTTCCACTTGGTTATCTGGCC
rJMSF047L12+          AGAACAGCTTCAGTGTCCTTAAGGAATTGCCTGTATTTACTTCCACTTGGTTATCTAGCC
                      ____________________________________________________________
consensus             AGAACAGCTTCAGTGTCCTTAAGGAATTGCCTGTATTTACTTCCACTTGGTTATCTAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032M12-           TATGATTGGGGATTGACTTCAGGGTGGTTCTGCCTTGAGTCCACACTTCTTGCTCTTGCC
JMFN008H03-           TATGATTGGGGATTGACTTCAGGGTGGTTCTGCCTTGAGTCCACACTTCTTGCTCTTGCC
rJMSF028B05+          TATGATTGGGGATTGACTTCAGGGTGGTTCTGCCTTGAGTCCACACTTCTTGCTCTTGCC
rJMSF020P18+          TATGATTGGGGATTGACTTCAGGGTGGTTCTGCCTTGAGTCCACACTTCTTGCTCTTGCC
rJMSF047L12+          TATGATTGGGGATTGACTTCAGGGTGGTTCTGCCTTGAGTCCACACTTCTTGCTCTTGCC
                      ____________________________________________________________
consensus             TATGATTGGGGATTGACTTCAGGGTGGTTCTGCCTTGAGTCCACACTTCTTGCTCTTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032M12-           ATCAGCAGTACGGCAACATCATTCTACTTCAACCGCACAACAAAAGGTGCCAGGAGAATG
JMFN008H03-           ATCAGCAGTACGGCAACATCATTCTACTTCAACCGCACAACAAAAGGTGCCAGGAGAATG
rJMSF028B05+          ATCAGCAGTACGGCAACATCATTCTACTTCAACCGCACAACAAAAGGTGCCAGGAGAATG
rJMSF020P18+          ATCAGCAGTACGGCAACATCATTCTACTTCAACCGCACAACAAAAGGTGCCAGGAGAATG
rJMSF047L12+          ATCAGCAGTACGGCAACATCATTCTACTTCAACCGCACAACAAAAGGTGCCAGGAGAATG
                      ____________________________________________________________
consensus             ATCAGCAGTACGGCAACATCATTCTACTTCAACCGCACAACAAAAGGTGCCAGGAGAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032M12-           TTCCATGCCAGCCTTCTCTATCTTCCCGTATTTATGTCTGGGCTTCTATTTCATCGTATA
JMFN008H03-           TTCCATGCCAGCCTTCTCTATCTTCCCGTATTTATGTCTGGGCTTCTATTTCATCGTATA
rJMSF028B05+          TTCCATGCCAGCCTTCTCTATCTTCCCGTATTTATGTCTGGGCTTCTATTTCATCGTATA
rJMSF020P18+          TTCCATGCCAGCCTTCTCTATCTTCCCGTATTTATGTCTGGGCTTCTATTTCATCGTATA
rJMSF047L12+          TTCCATGCCAGCCTTCTCTATCTTCCCGTATTTATGTCTGGGCTTCTATTTCATCGTATA
                      ____________________________________________________________
consensus             TTCCATGCCAGCCTTCTCTATCTTCCCGTATTTATGTCTGGGCTTCTATTTCATCGTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032M12-           GATAACGAGCAACAGGCGACTGTGGAGAACCCTCATAAGATAACAGAACTCTCATATTCC
JMFN008H03-           GATAACGAGCAACAGGCGACTGTGGAGAACCCTCATAAGATAACAGAACTCTCATATTCC
rJMSF028B05+          GATAACGAGCAACAGGCGACTGTGGAGAACCCTCATAAGATAACAGAACTCTCATATTCC
rJMSF020P18+          GATAACGAGCAACAGGCGACTGTGGAGAACCCTCATAAGATAACAGAACTCTCATATTCC
rJMSF047L12+          GATAACGAGCAACAGGCGACTGTGGAGAACCCTCATAAGATAACAGAACTCTCATATTCC
                      ____________________________________________________________
consensus             GATAACGAGCAACAGGCGACTGTGGAGAACCCTCATAAGATAACAGAACTCTCATATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032M12-           TCAGAAAACACAGTGTTGTTGACACGGCAAAAGAGAGGCAATGCACAACCACGCCCACCC
JMFN008H03-           TCAGAAAACACAGTGTTGTTGACACGGCAAAAGAGAGGCAATGCACAACCACGCCCACCC
rJMSF028B05+          TCAGAAAACACAGTGTTGTTGACACGGCAAAAGAGAGGCAATGCACAACCACGCCCACCC
rJMSF020P18+          TCAGAAAACACAGTGTTGTTGACACGGCAAAAGAGAGGCAATGCACAACCACGCCCACCC
rJMSF047L12+          TCAGAAAACACAGTGTTGTTGACACGGCAAAAGAGAGGCAATGCACAACCACGCCCACCC
                      ____________________________________________________________
consensus             TCAGAAAACACAGTGTTGTTGACACGGCAAAAGAGAGGCAATGCACAACCACGCCCACCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN032M12-           GTAGCATATGCTTCAGTTGCTCCATTTCCTTTCTTGCCAGCTCCTTCATACGCCATGTC 
JMFN008H03-           GTAGCATATGCTTCAGTTGCTCCATTTCCTTTCTTGCCAGCTCCTTCATACGCCATGTCT
rJMSF028B05+          GTAGCATATGCTTCAGTTGCTCCATTTCCTTTCTTGCCAGCTCCTTCATACGCCATGTCT
rJMSF020P18+          GTAGCATATGCTTCAGTTGCTCCATTTCCTTTCTTGCCAGCTCCTTCATACGCCATGTCT
rJMSF047L12+          GTAGCATATGCTTCAGTTGCTCCATTTCCTTTCTTGCCAGCTCCTTCATACGCCATGTCT
                      ____________________________________________________________
consensus             GTAGCATATGCTTCAGTTGCTCCATTTCCTTTCTTGCCAGCTCCTTCATACGCCATGTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN008H03-           GAATCTTGAGTCTCTGTATTTATATTTTTGAA                            
rJMSF028B05+          GAATCTTGAGTCTCTGTATTTATATTTTTGAATAAAGACATCCATCAGCTGCTGTGAAGA
rJMSF020P18+          GAATCTTGAGTCTCTGTATTTATATTTTTGAATAAAGACATCCATCAGCTGCTGTGAAGA
rJMSF047L12+          GAATCTTGAGTCTCTGTATTTATATTTTTGAATAAAGACATCCATCAGCTGCTGTGAAGA
                      ____________________________________________________________
consensus             GAATCTTGAGTCTCTGTATTTATATTTTTGAATAAAGACATCCATCAGCTGCTGTGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B05+          TGCAGTGATTTTGCTATTCTAAACATGAATTATTTCATCAATTTTGATCCCAGCAGTATA
rJMSF020P18+          TGCAGTGATTTTGCTATTCTAAACATGAATTATTTCATCAATTTTGATCCCAGCAGTATA
rJMSF047L12+          TGCAGTGATTTTGCTATTCTAAACATGAATTATTTCATCAATTTTGATCCCAGCAGTATA
                      ____________________________________________________________
consensus             TGCAGTGATTTTGCTATTCTAAACATGAATTATTTCATCAATTTTGATCCCAGCAGTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028B05+          TTACACAATAATGCTTGTAAC                                       
rJMSF020P18+          TTACACAATAATGCTTGTAAC                                       
rJMSF047L12+          TTACACAATAATGCTTGTAACAGTTGTAACAATCTTTGTTTTGATTTGATACAAGATACC
                      ____________________________________________________________
consensus             TTACACAATAATGCTTGTAACAGTTGTAACAATCTTTGTTTTGATTTGATACAAGATACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L12+          TTCCAATTGGCTCCTACCTGATTTTGATATTTGTGTGAATCATCACTATAATATATGAAT
                      ____________________________________________________________
consensus             TTCCAATTGGCTCCTACCTGATTTTGATATTTGTGTGAATCATCACTATAATATATGAAT