Contig 005818:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049K11Sequence504006494 (6)ref|XP_009590244.1|2e-51PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni234005818 (5)gb|KDO51391.1|1e-09hypothetical protein CISIN_1g036632mg [Citrus sinensis]
JMSF020I19Sequence658006494 (6)ref|XP_009590244.1|7e-78PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni726005818 (5)emb|CAN81366.1|4e-87hypothetical protein VITISV_015775 [Vitis vinifera]
JMSF020O08Sequence684006494 (6)ref|XP_009590244.1|3e-93PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni787005818 (5)ref|XP_009779062.1|2e-158PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X2 [Ni
JMSF040M18Sequence658006494 (6)ref|XP_009590244.1|8e-95PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni909005818 (5)ref|XP_009779062.1|2e-156PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X2 [Ni
JMSF046M24Sequence667006494 (6)ref|XP_009590244.1|2e-93PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni654005818 (5)emb|CAN81366.1|1e-92hypothetical protein VITISV_015775 [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF040M18+ CCGAATTCCATGCT
                      ____________________________________________________________
consensus CCGAATTCCATGCT
 
. : . : . : . : . : . :
rJMSF020O08+ GATGGTGTT
rJMSF040M18+ TGGATTCGNTTTTAGATAAGGTCAACATTGCATTATGGCCACGTTTNCAAGGATGGTGTT
                      ____________________________________________________________
consensus TGGATTCGNTTTTAGATAAGGTCAACATTGCATTATGGCCACGTTTNCAAGGATGGTGTT
 
. : . : . : . : . : . :
rJMSF020O08+ TGACTTGCACCTCAATAGCCTGCGGAATGCCAATATCAGAACTCTCTGGGAGGATGATGT
rJMSF040M18+ TGACTTGCACCTCAATAGCCTGCGGAATGCCAATATCAGAACTCTCTGGGAGGATGATGT
                      ____________________________________________________________
consensus TGACTTGCACCTCAATAGCCTGCGGAATGCCAATATCAGAACTCTCTGGGAGGATGATGT
 
. : . : . : . : . : . :
rJMSF020O08+ TCATTCACATTATGTCATGAGACGTTATGCAGAATTTACTGCCTCACTTATTCATCTAAA
rJMSF040M18+ TCATCCACATTATGTCATGAGACGTTATGCAGAATTTACTGCCTCACTTATTCATCTAAA
                      ____________________________________________________________
consensus TCATTCACATTATGTCATGAGACGTTATGCAGAATTTACTGCCTCACTTATTCATCTAAA
 
. : . : . : . : . : . :
rJMSF020O08+ TGTTGAATATGGAGATGGTCAGCTTGAACTCAATATGGAGAGGCTGAGAATGGCTATTGA
rJMSF040M18+ TGTTGAATATGGAGATGGTCAGCTTGAACTCAATATGGAGAGGCTGAGAATGGCTATTGA
                      ____________________________________________________________
consensus TGTTGAATATGGAGATGGTCAGCTTGAACTCAATATGGAGAGGCTGAGAATGGCTATTGA
 
. : . : . : . : . : . :
rJMSF020O08+ TGACTTGCTTGTGAAGCTTGCAAAAATGTTCCCTAAACAAAAGCAGCAGACAGTATTTCT
rJMSF040M18+ TGACTTGCTTGTGAAGCTTGCAAAAATGTTCCCTAAACAAAAGCAGCAGACAGTATTTCT
                      ____________________________________________________________
consensus TGACTTGCTTGTGAAGCTTGCAAAAATGTTCCCTAAACAAAAGCAGCAGACAGTATTTCT
 
. : . : . : . : . : . :
rJMSF020O08+ AATAAACAACTATGACATGACGATATCTGTTTTGAAGGAAGCTGGTCCAGAGGGCAGTAA
rJMSF020I19+ AGGAAGCTGGTCCAGAGGGCAGTAA
rJMSF040M18+ AATAAACAACTATGACATGACGATATCTGTTTTGAAGGAAGCTGGTCCAGAGGGCAGTAA
rJMSF046M24+ AGGAAGCTGGTCCAGAGGGCAGTAA
                      ____________________________________________________________
consensus AATAAACAACTATGACATGACGATATCTGTTTTGAAGGAAGCTGGTCCAGAGGGCAGTAA
 
. : . : . : . : . : . :
rJMSF020O08+ AATTCAACACCATTTCGAGGATTTACTGAAGAACAACACTGCTATATTTGTGGAAGAGTT
rJMSF020I19+ AATTCAACACCATTTCGAGGATTTACTGAAGAACAACACTGCTATATTTGTGGAAGAGTT
rJMSF040M18+ AATTCAACACCATTTCGAGGATTTACTGAAGAACAACACTGCTATATTTGTGGAAGAGTT
rJMSF046M24+ AATTCAACACCATTTCGAGGATTTACTGAAGAACAACACTGCTATATTTGTGGAAGAGTT
                      ____________________________________________________________
consensus AATTCAACACCATTTCGAGGATTTACTGAAGAACAACACTGCTATATTTGTGGAAGAGTT
 
. : . : . : . : . : . :
rJMSF020O08+ ACTGCTGGAGCACTTCAGTGATCTTATCAAGTTTGTAAAGACGAGAGGATCCGAGGATCC
rJMSF020I19+ ACTGCTGGAGCACTTCAGTGATCTTATCAAGTTTGTAAAGACGAGAGGATCCGAGGATCC
rJMSF040M18+ ACTGCTGGAGCACTTCAGTGATCTTATCAAGTTTGTAAAGACGAGAGGATCCGAGGATCC
rJMSF046M24+ ACTGCTGGAGCACTTCAGTGATCTTATCAAGTTTGTAAAGACGAGAGGATCCGAGGATCC
                      ____________________________________________________________
consensus ACTGCTGGAGCACTTCAGTGATCTTATCAAGTTTGTAAAGACGAGAGGATCCGAGGATCC
 
. : . : . : . : . : . :
rJMSF020O08+ AAGTTCTGGATCTGAACGGCCTATAACAGTTGCTGAGGTGGAACCTATCGTGAAGGACTT
rJMSF020I19+ AAGTTCTGGATCTGAACGGCCTATAACAGTTGCTGAGGTGGAACCTATCGTGAAGGACTT
rJMSF040M18+ AAGTTCTGGATCTGAACGGCCTATAACAGTTGCTGAGGTGGAACCTATCGTGAAGGACTT
rJMSF046M24+ AAGTTCTGGATCTGAACGGCCTATAACAGTTGCTGAGGTGGAACCTATCGTGAAGGACTT
                      ____________________________________________________________
consensus AAGTTCTGGATCTGAACGGCCTATAACAGTTGCTGAGGTGGAACCTATCGTGAAGGACTT
 
. : . : . : . : . : . :
rJMSF020O08+ TGCAAGTCGTTGGAAGGGGGCGATAGAGCTGATGCACAGCGACGTCATTACTTCTTTCAG
rJMSF020I19+ TGCAAGTCGTTGGAAGGGGGCGATAGAGCTGATGCACAGCGACGTCATTACTTCTTTCAG
rJMSF040M18+ TGCAAGTCGTTGGAAGGGGGCGATAGAGCTGATGCACAGCGACGTCATTACTTCTTTCAG
rJMSF046M24+ TGCAAGTCGTTGGAAGGGGGCGATAGAGCTGATGCACAGCGACGTCATTACTTCTTTCAG
                      ____________________________________________________________
consensus TGCAAGTCGTTGGAAGGGGGCGATAGAGCTGATGCACAGCGACGTCATTACTTCTTTCAG
 
. : . : . : . : . : . :
rJMSF020O08+ CAATTTCCTTTGCGGTATGGACATATTAAGAGCGGCCCTAACGCAACTGCTGCTGTACTA
rJMFF049K11+ AGAGCGGCCCTAACGCTACTGCTGCTGTACTA
rJMSF020I19+ CAATTTCCTTTGCGGTATGGACATATTAAGAGCGGCCCTAACGCAACTGCTGCTGTACTA
rJMSF040M18+ CAATTTCCTTTGCGGTATGGACATATTAAGAGCGGCCCTAACGCAACTGCTGCTGTACTA
rJMSF046M24+ CAATTTCCTTTGCGGTATGGACATATTAAGAGCGGCCCTAACGCAACTGCTGCTGTACTA
                      ____________________________________________________________
consensus CAATTTCCTTTGCGGTATGGACATATTAAGAGCGGCCCTAACGCAACTGCTGCTGTACTA
 
. : . : . : . : . : . :
rJMSF020O08+ TACAAGGCTTTCGGACTCTATAAAGCGGATTGCTGGCGGCACTGCACTTAATAAGGATCT
rJMFF049K11+ TACAAGGCTTTCGGACTCTATAAAGCGGATTGCTGGCGGCACTGTACTTAGTAAGGATCT
rJMSF020I19+ TACAAGGCTTTCGGACTCTATAAAGCGGATTGCTGGCGGCACTGCACTTAATAAGGATCT
rJMSF040M18+ TACAAGGCTTTCGGACTCTATAAAGCGGATTGCTGGCGGCACTGCACTTAATAAGGATCT
rJMSF046M24+ TACAAGGCTTTCGGACTCTATAAAGCGGATTGCTGGCGGCACTGCACTTAATAAGGATCT
                      ____________________________________________________________
consensus TACAAGGCTTTCGGACTCTATAAAGCGGATTGCTGGCGGCACTGCACTTAATAAGGATCT
 
. : . : . : . : . : . :
rJMSF020O08+ GGTTTCCATATCATCAATCATGTATGAGATTCGAAAATTCTCGAGGACTTTCTAGCTTGT
rJMFF049K11+ GGTTTCCATATCATCAATCATGTATGAGATTCGAAAATTCTCGAGGACTTTCTAGCTTGT
rJMSF020I19+ GGTTTCCATATCATCAATCATGTATGAGATTCGAAAATTCTCGAGGACTTTCTAGCTTGT
rJMSF040M18+ GGTTTCCATATCATCAATCATGTATGAGATTCGAAAATTCTCGAGGACTTTCTAGCTTGT
rJMSF046M24+ GGTTTCCATATCATCAATCATGTATGAGATTCGAAAATTCTCGAGGACTTTCTAGCTTGT
                      ____________________________________________________________
consensus GGTTTCCATATCATCAATCATGTATGAGATTCGAAAATTCTCGAGGACTTTCTAGCTTGT
 
. : . : . : . : . : . :
rJMSF020O08+ TTCTCCTGTATGCATAATGTTTGTTGTGAGTGTCTGAACGATTCGTT
rJMFF049K11+ TTCTCCTGTATGCATAATGTTTGTTGTGAGTGTCTGAACGATTCGTTTTCCTCTAGAGGT
rJMSF020I19+ TTCTCCTGTATGCATAATGTTTGTTGTGAGTGTCTGAACGATTCGTTTTCCTCTAGAGGT
rJMSF040M18+ TTCTCCTGTATGCATAATGTTTGTTGTGAGTGTCTGAACGATTCGTTTTCCTCTAGAGGT
rJMSF046M24+ TTCTCCTGTATGCATAATGTTTGTTGTGAGTGTCTGAACGATTCGTTTTCCTCTAGAGGT
                      ____________________________________________________________
consensus TTCTCCTGTATGCATAATGTTTGTTGTGAGTGTCTGAACGATTCGTTTTCCTCTAGAGGT
 
. : . : . : . : . : . :
rJMFF049K11+ ATTATACTCATACACCTTTGCC
rJMSF020I19+ ATTATACTCATACACCTTTGCCAAAAGCTCTGAATTT
rJMSF040M18+ ATTATACTCATACACCTTTGCCAAAAGCTCTGAATTTTATATAGGTTAGT
rJMSF046M24+ ATTATACTCATACACCTTTGCCAAAAGCTCTGAATTTTATATAGGTTAGTTGAATTTTGT
                      ____________________________________________________________
consensus ATTATACTCATACACCTTTGCCAAAAGCTCTGAATTTTATATAGGTTAGTTGAATTTTGT
 
. : . : . : . : . : . :
rJMSF046M24+ ACGTTTATAAATATGTATTTCAGCTCATGTATTCTTGATCCAAGACTGCCAACCGGTTAC
                      ____________________________________________________________
consensus ACGTTTATAAATATGTATTTCAGCTCATGTATTCTTGATCCAAGACTGCCAACCGGTTAC