| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF049K11 | Sequence | 504 | 006494 (6) | ref|XP_009590244.1| | 2e-51 | PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni | 234 | 005818 (5) | gb|KDO51391.1| | 1e-09 | hypothetical protein CISIN_1g036632mg [Citrus sinensis] |
| JMSF020I19 | Sequence | 658 | 006494 (6) | ref|XP_009590244.1| | 7e-78 | PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni | 726 | 005818 (5) | emb|CAN81366.1| | 4e-87 | hypothetical protein VITISV_015775 [Vitis vinifera] |
| JMSF020O08 | Sequence | 684 | 006494 (6) | ref|XP_009590244.1| | 3e-93 | PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni | 787 | 005818 (5) | ref|XP_009779062.1| | 2e-158 | PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X2 [Ni |
| JMSF040M18 | Sequence | 658 | 006494 (6) | ref|XP_009590244.1| | 8e-95 | PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni | 909 | 005818 (5) | ref|XP_009779062.1| | 2e-156 | PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X2 [Ni |
| JMSF046M24 | Sequence | 667 | 006494 (6) | ref|XP_009590244.1| | 2e-93 | PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Ni | 654 | 005818 (5) | emb|CAN81366.1| | 1e-92 | hypothetical protein VITISV_015775 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMSF040M18+ CCGAATTCCATGCT
____________________________________________________________
consensus CCGAATTCCATGCT
. : . : . : . : . : . :
rJMSF020O08+ GATGGTGTT
rJMSF040M18+ TGGATTCGNTTTTAGATAAGGTCAACATTGCATTATGGCCACGTTTNCAAGGATGGTGTT
____________________________________________________________
consensus TGGATTCGNTTTTAGATAAGGTCAACATTGCATTATGGCCACGTTTNCAAGGATGGTGTT
. : . : . : . : . : . :
rJMSF020O08+ TGACTTGCACCTCAATAGCCTGCGGAATGCCAATATCAGAACTCTCTGGGAGGATGATGT
rJMSF040M18+ TGACTTGCACCTCAATAGCCTGCGGAATGCCAATATCAGAACTCTCTGGGAGGATGATGT
____________________________________________________________
consensus TGACTTGCACCTCAATAGCCTGCGGAATGCCAATATCAGAACTCTCTGGGAGGATGATGT
. : . : . : . : . : . :
rJMSF020O08+ TCATTCACATTATGTCATGAGACGTTATGCAGAATTTACTGCCTCACTTATTCATCTAAA
rJMSF040M18+ TCATCCACATTATGTCATGAGACGTTATGCAGAATTTACTGCCTCACTTATTCATCTAAA
____________________________________________________________
consensus TCATTCACATTATGTCATGAGACGTTATGCAGAATTTACTGCCTCACTTATTCATCTAAA
. : . : . : . : . : . :
rJMSF020O08+ TGTTGAATATGGAGATGGTCAGCTTGAACTCAATATGGAGAGGCTGAGAATGGCTATTGA
rJMSF040M18+ TGTTGAATATGGAGATGGTCAGCTTGAACTCAATATGGAGAGGCTGAGAATGGCTATTGA
____________________________________________________________
consensus TGTTGAATATGGAGATGGTCAGCTTGAACTCAATATGGAGAGGCTGAGAATGGCTATTGA
. : . : . : . : . : . :
rJMSF020O08+ TGACTTGCTTGTGAAGCTTGCAAAAATGTTCCCTAAACAAAAGCAGCAGACAGTATTTCT
rJMSF040M18+ TGACTTGCTTGTGAAGCTTGCAAAAATGTTCCCTAAACAAAAGCAGCAGACAGTATTTCT
____________________________________________________________
consensus TGACTTGCTTGTGAAGCTTGCAAAAATGTTCCCTAAACAAAAGCAGCAGACAGTATTTCT
. : . : . : . : . : . :
rJMSF020O08+ AATAAACAACTATGACATGACGATATCTGTTTTGAAGGAAGCTGGTCCAGAGGGCAGTAA
rJMSF020I19+ AGGAAGCTGGTCCAGAGGGCAGTAA
rJMSF040M18+ AATAAACAACTATGACATGACGATATCTGTTTTGAAGGAAGCTGGTCCAGAGGGCAGTAA
rJMSF046M24+ AGGAAGCTGGTCCAGAGGGCAGTAA
____________________________________________________________
consensus AATAAACAACTATGACATGACGATATCTGTTTTGAAGGAAGCTGGTCCAGAGGGCAGTAA
. : . : . : . : . : . :
rJMSF020O08+ AATTCAACACCATTTCGAGGATTTACTGAAGAACAACACTGCTATATTTGTGGAAGAGTT
rJMSF020I19+ AATTCAACACCATTTCGAGGATTTACTGAAGAACAACACTGCTATATTTGTGGAAGAGTT
rJMSF040M18+ AATTCAACACCATTTCGAGGATTTACTGAAGAACAACACTGCTATATTTGTGGAAGAGTT
rJMSF046M24+ AATTCAACACCATTTCGAGGATTTACTGAAGAACAACACTGCTATATTTGTGGAAGAGTT
____________________________________________________________
consensus AATTCAACACCATTTCGAGGATTTACTGAAGAACAACACTGCTATATTTGTGGAAGAGTT
. : . : . : . : . : . :
rJMSF020O08+ ACTGCTGGAGCACTTCAGTGATCTTATCAAGTTTGTAAAGACGAGAGGATCCGAGGATCC
rJMSF020I19+ ACTGCTGGAGCACTTCAGTGATCTTATCAAGTTTGTAAAGACGAGAGGATCCGAGGATCC
rJMSF040M18+ ACTGCTGGAGCACTTCAGTGATCTTATCAAGTTTGTAAAGACGAGAGGATCCGAGGATCC
rJMSF046M24+ ACTGCTGGAGCACTTCAGTGATCTTATCAAGTTTGTAAAGACGAGAGGATCCGAGGATCC
____________________________________________________________
consensus ACTGCTGGAGCACTTCAGTGATCTTATCAAGTTTGTAAAGACGAGAGGATCCGAGGATCC
. : . : . : . : . : . :
rJMSF020O08+ AAGTTCTGGATCTGAACGGCCTATAACAGTTGCTGAGGTGGAACCTATCGTGAAGGACTT
rJMSF020I19+ AAGTTCTGGATCTGAACGGCCTATAACAGTTGCTGAGGTGGAACCTATCGTGAAGGACTT
rJMSF040M18+ AAGTTCTGGATCTGAACGGCCTATAACAGTTGCTGAGGTGGAACCTATCGTGAAGGACTT
rJMSF046M24+ AAGTTCTGGATCTGAACGGCCTATAACAGTTGCTGAGGTGGAACCTATCGTGAAGGACTT
____________________________________________________________
consensus AAGTTCTGGATCTGAACGGCCTATAACAGTTGCTGAGGTGGAACCTATCGTGAAGGACTT
. : . : . : . : . : . :
rJMSF020O08+ TGCAAGTCGTTGGAAGGGGGCGATAGAGCTGATGCACAGCGACGTCATTACTTCTTTCAG
rJMSF020I19+ TGCAAGTCGTTGGAAGGGGGCGATAGAGCTGATGCACAGCGACGTCATTACTTCTTTCAG
rJMSF040M18+ TGCAAGTCGTTGGAAGGGGGCGATAGAGCTGATGCACAGCGACGTCATTACTTCTTTCAG
rJMSF046M24+ TGCAAGTCGTTGGAAGGGGGCGATAGAGCTGATGCACAGCGACGTCATTACTTCTTTCAG
____________________________________________________________
consensus TGCAAGTCGTTGGAAGGGGGCGATAGAGCTGATGCACAGCGACGTCATTACTTCTTTCAG
. : . : . : . : . : . :
rJMSF020O08+ CAATTTCCTTTGCGGTATGGACATATTAAGAGCGGCCCTAACGCAACTGCTGCTGTACTA
rJMFF049K11+ AGAGCGGCCCTAACGCTACTGCTGCTGTACTA
rJMSF020I19+ CAATTTCCTTTGCGGTATGGACATATTAAGAGCGGCCCTAACGCAACTGCTGCTGTACTA
rJMSF040M18+ CAATTTCCTTTGCGGTATGGACATATTAAGAGCGGCCCTAACGCAACTGCTGCTGTACTA
rJMSF046M24+ CAATTTCCTTTGCGGTATGGACATATTAAGAGCGGCCCTAACGCAACTGCTGCTGTACTA
____________________________________________________________
consensus CAATTTCCTTTGCGGTATGGACATATTAAGAGCGGCCCTAACGCAACTGCTGCTGTACTA
. : . : . : . : . : . :
rJMSF020O08+ TACAAGGCTTTCGGACTCTATAAAGCGGATTGCTGGCGGCACTGCACTTAATAAGGATCT
rJMFF049K11+ TACAAGGCTTTCGGACTCTATAAAGCGGATTGCTGGCGGCACTGTACTTAGTAAGGATCT
rJMSF020I19+ TACAAGGCTTTCGGACTCTATAAAGCGGATTGCTGGCGGCACTGCACTTAATAAGGATCT
rJMSF040M18+ TACAAGGCTTTCGGACTCTATAAAGCGGATTGCTGGCGGCACTGCACTTAATAAGGATCT
rJMSF046M24+ TACAAGGCTTTCGGACTCTATAAAGCGGATTGCTGGCGGCACTGCACTTAATAAGGATCT
____________________________________________________________
consensus TACAAGGCTTTCGGACTCTATAAAGCGGATTGCTGGCGGCACTGCACTTAATAAGGATCT
. : . : . : . : . : . :
rJMSF020O08+ GGTTTCCATATCATCAATCATGTATGAGATTCGAAAATTCTCGAGGACTTTCTAGCTTGT
rJMFF049K11+ GGTTTCCATATCATCAATCATGTATGAGATTCGAAAATTCTCGAGGACTTTCTAGCTTGT
rJMSF020I19+ GGTTTCCATATCATCAATCATGTATGAGATTCGAAAATTCTCGAGGACTTTCTAGCTTGT
rJMSF040M18+ GGTTTCCATATCATCAATCATGTATGAGATTCGAAAATTCTCGAGGACTTTCTAGCTTGT
rJMSF046M24+ GGTTTCCATATCATCAATCATGTATGAGATTCGAAAATTCTCGAGGACTTTCTAGCTTGT
____________________________________________________________
consensus GGTTTCCATATCATCAATCATGTATGAGATTCGAAAATTCTCGAGGACTTTCTAGCTTGT
. : . : . : . : . : . :
rJMSF020O08+ TTCTCCTGTATGCATAATGTTTGTTGTGAGTGTCTGAACGATTCGTT
rJMFF049K11+ TTCTCCTGTATGCATAATGTTTGTTGTGAGTGTCTGAACGATTCGTTTTCCTCTAGAGGT
rJMSF020I19+ TTCTCCTGTATGCATAATGTTTGTTGTGAGTGTCTGAACGATTCGTTTTCCTCTAGAGGT
rJMSF040M18+ TTCTCCTGTATGCATAATGTTTGTTGTGAGTGTCTGAACGATTCGTTTTCCTCTAGAGGT
rJMSF046M24+ TTCTCCTGTATGCATAATGTTTGTTGTGAGTGTCTGAACGATTCGTTTTCCTCTAGAGGT
____________________________________________________________
consensus TTCTCCTGTATGCATAATGTTTGTTGTGAGTGTCTGAACGATTCGTTTTCCTCTAGAGGT
. : . : . : . : . : . :
rJMFF049K11+ ATTATACTCATACACCTTTGCC
rJMSF020I19+ ATTATACTCATACACCTTTGCCAAAAGCTCTGAATTT
rJMSF040M18+ ATTATACTCATACACCTTTGCCAAAAGCTCTGAATTTTATATAGGTTAGT
rJMSF046M24+ ATTATACTCATACACCTTTGCCAAAAGCTCTGAATTTTATATAGGTTAGTTGAATTTTGT
____________________________________________________________
consensus ATTATACTCATACACCTTTGCCAAAAGCTCTGAATTTTATATAGGTTAGTTGAATTTTGT
. : . : . : . : . : . :
rJMSF046M24+ ACGTTTATAAATATGTATTTCAGCTCATGTATTCTTGATCCAAGACTGCCAACCGGTTAC
____________________________________________________________
consensus ACGTTTATAAATATGTATTTCAGCTCATGTATTCTTGATCCAAGACTGCCAACCGGTTAC