| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF013A23 | Sequence | 225 | 002434 (3) | 585 | 005817 (3) | ref|XP_009769741.1| | 2e-26 | PREDICTED: chloride channel protein CLC-f-like isoform X1 [Nicotiana sylvestris | |||
| JMSF024M03 | Sequence | 638 | 002434 (3) | ref|XP_009617325.1| | 1e-35 | PREDICTED: chloride channel protein CLC-f-like [Nicotiana tomentosiformis] | 602 | 005817 (3) | ref|XP_009617325.1| | 9e-51 | PREDICTED: chloride channel protein CLC-f-like [Nicotiana tomentosiformis] |
| JMSF046J05 | Sequence | 722 | 002434 (3) | ref|XP_009617325.1| | 2e-35 | PREDICTED: chloride channel protein CLC-f-like [Nicotiana tomentosiformis] | 733 | 005817 (3) | ref|XP_009617325.1| | 3e-64 | PREDICTED: chloride channel protein CLC-f-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF046J05+ TTACCNTGAACCAA
____________________________________________________________
consensus TTACCNTGAACCAA
. : . : . : . : . : . :
rJMSF046J05+ ACCGTGAAAGAAGCATTGAAATGCATGCATGATGGCCAACAGCATTGTGCTCTTGTGGTT
____________________________________________________________
consensus ACCGTGAAAGAAGCATTGAAATGCATGCATGATGGCCAACAGCATTGTGCTCTTGTGGTT
. : . : . : . : . : . :
rJMSF024M03+ CTAACATATGGAGACATCAAGCGAAGTTTATTT
rJMSF046J05+ GACAGTGAAGGTTATCTTGAAGGAANTCTAACATANGGAGACATCAAGCGAAGTTTNTTT
____________________________________________________________
consensus GACAGTGAAGGTTATCTTGAAGGAANTCTAACATATGGAGACATCAAGCGAAGTTTATTT
. : . : . : . : . : . :
rJMSF024M03+ AAGAACTCTGGGGATTCTCCCAACATGGAATTTTTACATACAGATGAAAATACATGTCTT
rJMSF013A23+ TGGGGANTCTCCCAACATGGAATTTTTNCATNCAGATGNAAATACATGTCTT
rJMSF046J05+ AAGAACTNTGGGGATTCTCCCAACATGGAATTTTTACATACAGATGAAAATACATGTCTT
____________________________________________________________
consensus AAGAACTCTGGGGATTCTCCCAACATGGAATTTTTACATACAGATGAAAATACATGTCTT
. : . : . : . : . : . :
rJMSF024M03+ GTCTCCTCCATATGCACAAGAGGAATAAGCTACCTTGGAAGAGAATGCGGACTCTTAACT
rJMSF013A23+ GTCTCCTCCATATGCACAAGNGGAATAAGCTACCNTGGAAGAGAATGCGGACTCTTAACT
rJMSF046J05+ GTCTCCTCCATATGCACAAGAGGAATAAGNTNCCTTGGAAGAGAATGCGGACTTTTAACT
____________________________________________________________
consensus GTCTCCTCCATATGCACAAGAGGAATAAGCTACCTTGGAAGAGAATGCGGACTCTTAACT
. : . : . : . : . : . :
rJMSF024M03+ TGTTATCCAGATACCGAATTGGCAATGGCAAAGCAACTAATGGAGGCTAAAGGAATTAAA
rJMSF013A23+ TGTTATCCAGATNCCGAATTGGCAANGGCAAAGCAACTAATGGAGGCTAAAGGAATTAAA
rJMSF046J05+ TGTTATCCAGATACCGAATTGGCAATGGCAAAGCAACTAATGGAGGCTAAAGGAATTAAA
____________________________________________________________
consensus TGTTATCCAGATACCGAATTGGCAATGGCAAAGCAACTAATGGAGGCTAAAGGAATTAAA
. : . : . : . : . : . :
rJMSF024M03+ CAGTTGCCGATTGTTAAGCGTGGTAGAGACGCCCAAAAAGAAAGAAAACGTAGAGCCA-T
rJMSF013A23+ CAGTTGCCGATTGTTAAGCGTGGTAGAGACGCCCAAAAAGAAAGAAAACGTAGAGCCACT
rJMSF046J05+ CAGTTGCNGATTGTTAAGCGTGGTAGAGACNCCCAAAAAGAAAGAAAACGTAGANCCA-T
____________________________________________________________
consensus CAGTTGCCGATTGTTAAGCGTGGTAGAGACGCCCAAAAAGAAAGAAAACGTAGAGCCA-T
. : . : . : . : . : . :
rJMSF024M03+ TGCTATTTTGAATTATGGTTCGATTTGGGATTCTATCAGAAAAGAGGTTAATTGGCACAA
rJMSF013A23+ TGCTATTTTGAATTATGGTTCGATTTGGGATTCTATCAGAAAAGAGGTTAATTGGCACAA
rJMSF046J05+ TGCTATTCTGAATTATGGTTCGATTTGGGATTCTATCAGAAAAGAGGTTAATTGGCACAA
____________________________________________________________
consensus TGCTATTTTGAATTATGGTTCGATTTGGGATTCTATCAGAAAAGAGGTTAATTGGCACAA
. : . : . : . : . : . :
rJMSF024M03+ GTCAGCCTATCAGCAGGCAAGAGGAGACAATTCAAATCAGATAGTTCCAATTGGCCATTG
rJMSF013A23+ GTCAGCCTNTCAGCAGGCAAGAGGAGNCAATTCAAATCNGNTAGTTCCAATTGGCCNTTG
rJMSF046J05+ GTCAGCCTATCAGCAGGCAAGAGGAGACAATTCAAATCAGATAGTTCCAATTGGCCATTG
____________________________________________________________
consensus GTCAGCCTATCAGCAGGCAAGAGGAGACAATTCAAATCAGATAGTTCCAATTGGCCATTG
. : . : . : . : . : . :
rJMSF024M03+ ACTGCACAAAGGGTGTTTTGATTCACAGAAAACATACTTAAAAAGCCTTCTGGTTTCCGC
rJMSF013A23+ ACTGCACAAAGGGNGTTTTGATTCACAGAAAACATACTTAAAAAGCCTTCTGGTTTCCGC
rJMSF046J05+ ACTGCACAAAGGGTGTTTTGATTCACAGAAAACATACTTAAAAAGCCTTCTGGTTTCCGN
____________________________________________________________
consensus ACTGCACAAAGGGTGTTTTGATTCACAGAAAACATACTTAAAAAGCCTTCTGGTTTCCGC
. : . : . : . : . : . :
rJMSF024M03+ TTCGCTTGGTATAGAGCAATCATCTTATTCATTGATGAGAAATCCTATAGAATTGTCCTT
rJMSF013A23+ TTCGCTTGGTATAGAGCAATCATCTTATTCATTGATGNGAAATCCTATAGAATTGTCCNT
rJMSF046J05+ TTCGCTTGGTATAGAGCAATCATCTTATTCATTGATGAGAAATCCTATAGAATTGTCCTT
____________________________________________________________
consensus TTCGCTTGGTATAGAGCAATCATCTTATTCATTGATGAGAAATCCTATAGAATTGTCCTT
. : . : . : . : . : . :
rJMSF024M03+ TTTTTTTGGTGCTACAAGTGTAGTAATAGGCTCCCCTCTTGGCA
rJMSF013A23+ TTTNTNTGGTGCTACAAGTGTAGTAATAGGCTCCCCTCTTGGCA
rJMSF046J05+ TTTTTTTGGTGCTACAAGTGTAGTAATAGGCTCCCCTCTTGGCAGCATGGGAGGTATTTT
____________________________________________________________
consensus TTTTTTTGGTGCTACAAGTGTAGTAATAGGCTCCCCTCTTGGCAGCATGGGAGGTATTTT
. : . : . : . : . : . :
rJMSF046J05+ GCTTAAAGCCCGTGATGAAGGGTTTTGTCTTCTAGTTCCATTCGAGGTGTAATATATNAC
____________________________________________________________
consensus GCTTAAAGCCCGTGATGAAGGGTTTTGTCTTCTAGTTCCATTCGAGGTGTAATATATNAC