| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001M17 | Sequence | 514 | 008055 (5) | ref|XP_006343041.1| | 1e-26 | PREDICTED: NADP-dependent malic enzyme, chloroplastic-like [Solanum tuberosum] | 756 | 005816 (6) | gb|AAB41026.1| | 2e-106 | NADP-malic enzyme, partial [Flaveria linearis] |
| JMFF004B16 | Sequence | 593 | 008055 (5) | ref|XP_006343041.1| | 1e-57 | PREDICTED: NADP-dependent malic enzyme, chloroplastic-like [Solanum tuberosum] | 720 | 005816 (6) | gb|AAB19243.1| | 6e-91 | NADP-malic enzyme, partial [Flaveria trinervia] |
| JMSF025A22 | Sequence | 608 | 005816 (6) | emb|CBI36068.3| | 2e-115 | unnamed protein product [Vitis vinifera] | 717 | 005816 (6) | gb|AAB19243.1| | 8e-95 | NADP-malic enzyme, partial [Flaveria trinervia] |
| JMSF035F07 | Sequence | 690 | 006673 (9) | ref|XP_009761754.1| | 187 | PREDICTED: uncharacterized protein LOC104213893 [Nicotiana sylvestris] | 464 | 005816 (6) | ref|XP_009591013.1| | 6e-36 | PREDICTED: NADP-dependent malic enzyme, chloroplastic-like [Nicotiana tomentosi |
| JMSF046G19 | Sequence | 674 | 008055 (5) | ref|XP_006343041.1| | 2e-61 | PREDICTED: NADP-dependent malic enzyme, chloroplastic-like [Solanum tuberosum] | 661 | 005816 (6) | gb|AAB19243.1| | 3e-78 | NADP-malic enzyme, partial [Flaveria trinervia] |
This contig is upended
. : . : . : . : . : . :
JMSF025A22- GGGGGGGCACTGGCATTGCT
____________________________________________________________
consensus GGGGGGGCACTGGCATTGCT
. : . : . : . : . : . :
JMSF025A22- GAACTCATTGCGCTCGAGATGTCAAAACAGACGGGAGCCCCATTGGAAGAAACTCGGAAG
____________________________________________________________
consensus GAACTCATTGCGCTCGAGATGTCAAAACAGACGGGAGCCCCATTGGAAGAAACTCGGAAG
. : . : . : . : . : . :
JMSF025A22- AAAATTTGGCTGGTGGACTCCAAAGGGCTGATTGTTAAGTCCCGGGTGGAATCACTTCAG
____________________________________________________________
consensus AAAATTTGGCTGGTGGACTCCAAAGGGCTGATTGTTAAGTCCCGGGTGGAATCACTTCAG
. : . : . : . : . : . :
JMSF025A22- CACTTTAAAAGGCCGTGGGCCCACGAACACGAGCCCGTAAAGGATCTTGTGGATGCAGTG
rJMFF001M17+ CTTGTGGATGCAGTG
____________________________________________________________
consensus CACTTTAAAAGGCCGTGGGCCCACGAACACGAGCCCGTAAAGGATCTTGTGGATGCAGTG
. : . : . : . : . : . :
JMSF025A22- AAGGCTATCAAGCCTACGGTCTTGATTGGATCTTCTGGAGCTGGAAGAACGTTCACG-AA
rJMFF001M17+ AAGGCTATCAAGCCTACGGTCTTGATTGGATCTTCTGGAGCTGGAAGAACGTTCACG-AA
rJMFF004B16+ GTCTTGATTGGATCTTCTGGAGCTGGAAGAACGTTCACGAAA
rJMSF025A22+ GAGCTGGAAGAACGTTCACG-AA
____________________________________________________________
consensus AAGGCTATCAAGCCTACGGTCTTGATTGGATCTTCTGGAGCTGGAAGAACGTTCACG-AA
. : . : . : . : . : . :
JMSF025A22- AGATGTTATTGGAGCTATGGCTTCCTTCAACGAGAAACCTATCGTTCTTGCTCTCTCGAA
rJMFF001M17+ AGATGTTATTGGAGCTATGGCTTCCTTCAACGAGAAACCTATCGTTCTTGCTCTCTCGAA
rJMFF004B16+ AGATGTTATTGGAGCTATGGCTTCCTTCAACGAGAAACCTATCGTTCTTGCTCTCTCGAA
rJMSF025A22+ AGATGTTATTGGAGCTATGGCTTCCTTCAACGAGAAACCTATCGTTCTTGCTCTCTCGAA
____________________________________________________________
consensus AGATGTTATTGGAGCTATGGCTTCCTTCAACGAGAAACCTATCGTTCTTGCTCTCTCGAA
. : . : . : . : . : . :
JMSF025A22- CCCAACATCGCAGTCGGAGTGTACCGCGGAAGAGGCGTATACCTGGAGTGAGGGCCGAGC
rJMFF001M17+ CCCAACATCGCAGTCGGAGTGTACCGCGGAAGAGGCGTATACCTGGAGTGAGGGCCGAGC
rJMFF004B16+ CCCAACATCGCAGTCGGAGTGTACCGCGGAAGAGGCGTATACCTGGAGTGAGGGCCGAGC
rJMSF025A22+ CCCAACATCGCAGTCGGAGTGTACCGCGGAAGAGGCGTATACCTGGAGTGAGGGCCGAGC
rJMSF046G19+ AACATCGCAGTCGGAGTGTACCGCGGAAGAGGCGTATACCTGGAGTGAGGGCCGAGC
____________________________________________________________
consensus CCCAACATCGCAGTCGGAGTGTACCGCGGAAGAGGCGTATACCTGGAGTGAGGGCCGAGC
. : . : . : . : . : . :
JMSF025A22- TATATTTGCCAGTGGAAGCCCATTCCCCCCTTTCGAATACAAGGGGAGGACCCTTTTGTC
rJMFF001M17+ TATATTTGCCAGTGGAAGCCCATTCCCCCCTTTCGAATACAAGGGGAGGACCCTTTTGTC
rJMFF004B16+ TATATTTGCCAGTGGAAGCCCATTCCCCCCTTTCGAATACAAGGGGAGGACCCTTTNGTC
rJMSF025A22+ TATATTTGCCAGTGGAAGCCCATTCCCCCCTTTCGAATACAAGGGGAGGACCCTTTTGTC
rJMSF046G19+ TATATTTGCCAGTGGAAGCCCATTCCCCCCTTTCGAATACAAGGGGAGGACCCTTTTGTC
____________________________________________________________
consensus TATATTTGCCAGTGGAAGCCCATTCCCCCCTTTCGAATACAAGGGGAGGACCCTTTTGTC
. : . : . : . : . : . :
JMSF025A22- CGGGCAGGCAAACAATGCATATATCTTCCCCGGGTTTGGTTTAGGACTCATAATTTCGGG
rJMFF001M17+ CGGGCAGGCAAACAATGCATATATCTTCCCCGGGTTTGGTTTAGGACTCATAATTTCGGG
rJMFF004B16+ CGGGCAGGCAAACAATGCATATATCTTCCCCGGGTTTGGTTTAGGACTCATAATTTCGGG
rJMSF025A22+ CGGGCAGGCAAACAATGCATATATCTTCCCCGGGTTTGGTTTAGGACTCATAATTTCGGG
rJMSF046G19+ CGGGCAGGCAAACAATGCATATATCTTCCCCGGGTTTGGTTTAGGACTCATAATTTCGGG
____________________________________________________________
consensus CGGGCAGGCAAACAATGCATATATCTTCCCCGGGTTTGGTTTAGGACTCATAATTTCGGG
. : . : . : . : . : . :
JMSF025A22- TGCAATCCGTGTCCACGATGACATGCTTCTTGCGGCCTCGGAAGCTCTAGCTGCCGAGGT
rJMFF001M17+ TGCAATCCGTGTCCACGATGACATGCTTCTTGCGGCCTCGGAAGCTCTAGCTGCCGAGGT
rJMFF004B16+ TGCAATCCGTGTCCACGATGACATGCTTCTTGCGGCCTCGGAAGCTCTAGCTGCCGAGGT
rJMSF025A22+ TGCAATCCGTGTCCACGATGACATGCTTCTTGCGGCCTCGGAAGCTCTAGCTGCCGAGGT
rJMSF035F07+ CCACGATGACATGCTTCTTGCGGCCTCGGAAGCTCTAGCTGCCGAGGT
rJMSF046G19+ TGCAATCCGTGTCCACGATGACATGCTTCTTGCGGCCTCGGAAGCTCTAGCTGCCGAGGT
____________________________________________________________
consensus TGCAATCCGTGTCCACGATGACATGCTTCTTGCGGCCTCGGAAGCTCTAGCTGCCGAGGT
. : . : . : . : . : . :
JMSF025A22- TACGCAAGAGAACTTCGATAAAGGACTCATATACCCTCCGTTTTCGAAC
rJMFF001M17+ TACGCAAGAGAACTTCGATAAAGGACTCATATACCCTCCGTTTTCGAACATCAGAAAAAT
rJMFF004B16+ TACGCAAGAGAACTTCGATAAAGGACTCATATACCCTCCGTTTTCGAACATCAGAAAAAT
rJMSF025A22+ TACGCAAGAGAACTTCGATAAAGGACTCATATACCCTCCGTTTTCGAACATCAGAAAAAT
rJMSF035F07+ TACGCAAGAGAACTTCGATAAAGGACTCATATACCCTCCGTTTTCGAACATCAGAAAAAT
rJMSF046G19+ TACGCAAGAGGACTTCGATAAAGGACTCATATACCCTCCGTTTTCGAACATCAGAAAAAT
____________________________________________________________
consensus TACGCAAGAGAACTTCGATAAAGGACTCATATACCCTCCGTTTTCGAACATCAGAAAAAT
. : . : . : . : . : . :
rJMFF001M17+ CTCGGCCCATATTGCCGCCAGAGTAGCCGCCAAAGCATATGAACTCGGTTTGGCCACTCG
rJMFF004B16+ CTCGGCCCATATTGCCGCCAGAGTAGCCGCCAAAGCATATGAACTCGGTTTGGCCACTCG
rJMSF025A22+ CTCGGCCCATATTGCCGCCAGAGTAGCCGCCAAAGCATATGAACTCGGTTTGGCCACTCG
rJMSF035F07+ CTCGGCCCATATTGCCGCCAGAGTAGCCGCCAAAGCATATGAACTCGGTTTGGCCACTCG
rJMSF046G19+ CTCGGCCCATATTGCCGCCAGAGTAGCCGCCAAAGCATATGAACTCGGTTTGGCCACTCG
____________________________________________________________
consensus CTCGGCCCATATTGCCGCCAGAGTAGCCGCCAAAGCATATGAACTCGGTTTGGCCACTCG
. : . : . : . : . : . :
rJMFF001M17+ TCTACCACAACCCGAAAACCTGGTTGCTTATGCCGAGAGCTGCATGTACAGCCCTACTTA
rJMFF004B16+ TCTACCACAACCCGAAAACCTGGTTGCTTATGCCGAGAGCTGCATGTACAGCCCTACTTA
rJMSF025A22+ TCTACCACAACCCGAAAACCTGGTTGCTTATGCCGAGAGCTGCATGTACAGCCCTACTTA
rJMSF035F07+ TCTACCACAACCCGAAAACCTGGTTGCTTATGCCGAGAGCTGCATGTACAGCCCTACTTA
rJMSF046G19+ TCTACCACAACCCGAAAACCTGGTTGCTTATGCCGAGAGCTGCATGTACAGCCCTACTTA
____________________________________________________________
consensus TCTACCACAACCCGAAAACCTGGTTGCTTATGCCGAGAGCTGCATGTACAGCCCTACTTA
. : . : . : . : . : . :
rJMFF001M17+ CCGTAGCTATCGCTAAGCGGTTGGAAGATTTACTCTTTTTAAGATTTAGATAGTTAAGTC
rJMFF004B16+ CCGTAGCTATCGCTAAGCGGTTGGAAGATTTACTCTTTTTAAGATTTAGATAGTTAAGTC
rJMSF025A22+ CCGTAGCTATCGCTAAGCGGTTGGAAGATTTACTCCTTTTAAGATTTAGATAGTTAAGTC
rJMSF035F07+ CCGTAGCTATCGCTAAGCGGTTGGAAGATTTACTCTTTTTAAGATTTAGATAGTTAAGTC
rJMSF046G19+ CCGTAGCTATCGCTAAGCGGTTGGAAGATTTACTCTTTTTAAGATTTAGATAGTTAAGTC
____________________________________________________________
consensus CCGTAGCTATCGCTAAGCGGTTGGAAGATTTACTCTTTTTAAGATTTAGATAGTTAAGTC
. : . : . : . : . : . :
rJMFF001M17+ TTTATTTTATTTTTTTCTTCTTTTTACATTTTGAATATGTGGTTTTAATTATTGAAGTTG
rJMFF004B16+ TTTATTTTATTTTTTTCTTCTTTTTACATTTTGAATATGTGGTTTTAATTATTGAAGTTG
rJMSF025A22+ TTTATTTTATTTTTTTCTTCTTTTTACATTTTGAATATGTGGTTTTAATTATTGAAGTTG
rJMSF035F07+ TTTATTTTATTTTTTTCTTCTTTTTACATTTTGAATATGTGGTTTTAATTATTGAAGTTG
rJMSF046G19+ TTTATTTTATTTTTTTCTTCTTTTTACATTTTGAATATGTGGTTTTAATTATTGAAGTTG
____________________________________________________________
consensus TTTATTTTATTTTTTTCTTCTTTTTACATTTTGAATATGTGGTTTTAATTATTGAAGTTG
. : . : . : . : . : . :
rJMFF001M17+ AGGGTGTTTTTAGGAGCAGGTTTAAGGTTAGATTGCAGAAATGTT-TGTGCTAGTGATGA
rJMFF004B16+ AGGGTGTTTTTAGGAGCAGGTTTAAGGTTAGATTGCAGAAATTTTGTGTGCTAGTGATGA
rJMSF025A22+ AGGGTGTTTTTAGGAGCAGGTTTAAGGTTAGATTGCAGAAATGTTGTGTGCTAGTGATGA
rJMSF035F07+ AGGGTGTTTTTAGGAGCAGGTTTAAGGTTAGATTGCAGAAATGTTGTGTGCTAGTGATGA
rJMSF046G19+ AGGGTGTTTTTAGGAGCAGGTTTAAGGTTAGATTGCAGAAATGTTGTGTGCTAGTGATGA
____________________________________________________________
consensus AGGGTGTTTTTAGGAGCAGGTTTAAGGTTAGATTGCAGAAATGTTGTGTGCTAGTGATGA
. : . : . : . : . : . :
rJMFF001M17+ ACTGATGA
rJMFF004B16+ ACTGATGATGTTAAAAAA
rJMSF025A22+ ACTGATGATGTTAAAAAAATANGAAAGTTTTTTAC
rJMSF035F07+ ACTGATGATGTTAAAAAAATAAGAAAGTTTTTTACTACT
rJMSF046G19+ ACTGATGATGTTAAAAAAATAAGAAAGTTTTTTACTACTTGAAAACCATATGTAGCTAAA
____________________________________________________________
consensus ACTGATGATGTTAAAAAAATAAGAAAGTTTTTTACTACTTGAAAACCATATGTAGCTAAA