Contig 005813:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013F09Sequence260003866 (3)747005813 (3)gb|KJB52888.1|2e-85hypothetical protein B456_008G282000 [Gossypium raimondii]
JMSF045K02Sequence774003866 (3)ref|XP_009784249.1|3e-94PREDICTED: phosphoglucomutase, chloroplastic isoform X2 [Nicotiana sylvestris]809005813 (3)sp|Q9SM59.1|PGMP_PEA3e-89RecName: Full=Phosphoglucomutase, chloroplastic; Short=PGM; AltName: Full=Gluco
JMSF050A20Sequence694003866 (3)ref|XP_009784250.1|2e-74PREDICTED: phosphoglucomutase, chloroplastic isoform X3 [Nicotiana sylvestris]737005813 (3)gb|KJB52888.1|1e-108hypothetical protein B456_008G282000 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF050A20+ AA
rJMSF013F09+ AA
rJMSF045K02+ GGGACAGGTTCTGACCACATCCGTGAGAA
                      ____________________________________________________________
consensus GGGACAGGTTCTGACCACATCCGTGAGAA
 
. : . : . : . : . : . :
rJMSF050A20+ AGATGGTATATGGGCTGTATTAGCTNGGCTTTCAATAATTGCATATAGGAACAAGGACAA
rJMSF013F09+ AGATGGTATATGGGCTGTATTAGCTTGGCTTTCAATAATTGCATATAGGAACAAGGACAA
rJMSF045K02+ AGATGGTATATGGGCTGTATTAGCTTGGCTTTCAATAATTGCATATAGGAACAAGGACAA
                      ____________________________________________________________
consensus AGATGGTATATGGGCTGTATTAGCTTGGCTTTCAATAATTGCATATAGGAACAAGGACAA
 
. : . : . : . : . : . :
rJMSF050A20+ GAAACCAGGGGAGGAATTGG-TTTCTGTTGGTGATGTTGTCAAGCAGCATTGGGCAACTT
rJMSF013F09+ GAAACCAGGGGAGGAATTGG-TTTCTGTTGGTGATGTTGTCAAGCAGCATTGGGCAACTT
rJMSF045K02+ GAAACCAGGGGAGGAATTGGTTTTCTGTTGGTGATGTTGTCAAGCAGCATTGGGCAACTT
                      ____________________________________________________________
consensus GAAACCAGGGGAGGAATTGG-TTTCTGTTGGTGATGTTGTCAAGCAGCATTGGGCAACTT
 
. : . : . : . : . : . :
rJMSF050A20+ ATGGGAGGAATTTCTTTTCTAGATATGACTATGAGGAATGTGAATCTGAAGGAGCCAATA
rJMSF013F09+ ATGCGAGGAA-TTCTTTTCTAGATATGACTATGAGGAATGTGAATCTGAAGGAGCCAATA
rJMSF045K02+ ATGGGAGGAATTTCTTTTCTAGATATGACTATGAGGAATGTGAATCTGAAGGAGCCAATA
                      ____________________________________________________________
consensus ATGGGAGGAATTTCTTTTCTAGATATGACTATGAGGAATGTGAATCTGAAGGAGCCAATA
 
. : . : . : . : . : . :
rJMSF050A20+ AGATGGTTGCATATCTTAGAGAACTAATCTCTACCAGTAAGGCTGGTGATAAGTATGGAA
rJMSF013F09+ AGATGGTTGCATATCTTAGAGAACTAATCTCTACCAGTAAGGCTGGTGATAAGTATGGAA
rJMSF045K02+ AGATGGTTGCATATCTTAGAGAACTAATCTCTACCAGTAAGGCTGGTGATAAGTATGGAA
                      ____________________________________________________________
consensus AGATGGTTGCATATCTTAGAGAACTAATCTCTACCAGTAAGGCTGGTGATAAGTATGGAA
 
. : . : . : . : . : . :
rJMSF050A20+ GTTATATCCTCAAATTTGCTGATGACTTCTCCTATGTTGATCCAGTAGATGGAAGTGTTG
rJMSF013F09+ GTTATATCCTCAAATTTGCTGATGACTTCTCCTATGTTGATCCAGTAGATGGAAGTGTTG
rJMSF045K02+ GTTATATCCTCAAATTTGCTGATGACTTCTCCTATGTTGATCCAGTAGATGGAAGTGTTG
                      ____________________________________________________________
consensus GTTATATCCTCAAATTTGCTGATGACTTCTCCTATGTTGATCCAGTAGATGGAAGTGTTG
 
. : . : . : . : . : . :
rJMSF050A20+ CATCCAAACAGGGGGTTCGATTTGTGTTCACTGATGGATCAAGGATCATCTTTAGATTAT
rJMSF013F09+ CATCCAAACAGGGGGTTCGATTTGTGTTCACTGATGGATCAAGGATCATCTTTAGATTAT
rJMSF045K02+ CATCCAAACAGGGGGTTCGATTTGTGTTCACTGATGGATCAAGGATCATCTTTAGATTAT
                      ____________________________________________________________
consensus CATCCAAACAGGGGGTTCGATTTGTGTTCACTGATGGATCAAGGATCATCTTTAGATTAT
 
. : . : . : . : . : . :
rJMSF050A20+ CGGGTACTGGTTCTGCTGGTGCAACAGTAAGAGTGTATATTGAACAGTTTGAGTCTGATG
rJMSF013F09+ CGGGTACTGGTTCTGCTGGTGCAACAGTAAGAGTGTATATTGAACAGTTTGAGTCTGATG
rJMSF045K02+ CGGGTACTGGTTCTGCTGGTGCAACAGTAAGAGTGTATATTGAACAGTTTGAGTCTGATG
                      ____________________________________________________________
consensus CGGGTACTGGTTCTGCTGGTGCAACAGTAAGAGTGTATATTGAACAGTTTGAGTCTGATG
 
. : . : . : . : . : . :
rJMSF050A20+ CCTCGAAGCATGACGTGGATGCCCAAATTGCATTGAAACCATTGATAGACCTCGCTCTGT
rJMSF013F09+ CCTCGAAGCATGACGTGGATGCCCAAATTGCATTGAAACCATTGATAGACCTCGCTCTGT
rJMSF045K02+ CCTCGAAGCATGACGTGGATGCCCAAATTGCATTGAAACCATTGATAGACCTCGCTCTGT
                      ____________________________________________________________
consensus CCTCGAAGCATGACGTGGATGCCCAAATTGCATTGAAACCATTGATAGACCTCGCTCTGT
 
. : . : . : . : . : . :
rJMSF050A20+ CTTTATCAAAGCTAAAGGAATTTACCGGAAGAGAGAAGCCAACTGTTATAACATAAAGAA
rJMSF013F09+ CTTTATCAAAGCTAAAGGAATTTACCGGAAGAGAGAAGCCAACTGTTATAACATAAAGAA
rJMSF045K02+ CTTTATCAAAGCTAAAGGAATTTACCGGAAGAGAGAAGCCAACTGTTATAACATAAAGAA
                      ____________________________________________________________
consensus CTTTATCAAAGCTAAAGGAATTTACCGGAAGAGAGAAGCCAACTGTTATAACATAAAGAA
 
. : . : . : . : . : . :
rJMSF050A20+ CACACTCAACTTTAATTTTATGCCTGTTGGAAGCATCTCAATGAGAACTGTAGCAGGTCG
rJMSF013F09+ CACACTCAACTTTAATTTTATGCCTGTTGGAAGCATCTCAATGAGAACTGTAGCAGGTCG
rJMSF045K02+ CACACTCAACTTTAATTTTATGCCTGTTGGAAGCATCTCAATGAGAACTGTAGCAGGTCG
                      ____________________________________________________________
consensus CACACTCAACTTTAATTTTATGCCTGTTGGAAGCATCTCAATGAGAACTGTAGCAGGTCG
 
. : . : . : . : . : . :
rJMSF050A20+ CAAACTCACTCTTTCCTCTACTTGTTACATTATGTATTGTTTATTCTTCTTGTTGTATGG
rJMSF013F09+ CAAACTCCCTCTTTCCTCTACTTGTTACATTATGTATTGTTTATTCTTCTTGTTGTATGG
rJMSF045K02+ CAAACTCCCTCTTTCCTCTACTTGTTACATTATGTATTGTTTATTCTTCTTGTTGTATGG
                      ____________________________________________________________
consensus CAAACTCCCTCTTTCCTCTACTTGTTACATTATGTATTGTTTATTCTTCTTGTTGTATGG
 
. : . : . : . : . : . :
rJMSF050A20+ TAGGCAGTCTCTCAAGGACATAAATTAGCTTCATTTTTTTGAATCTGTATAATTTTGTCT
rJMSF013F09+ TAGGCAGTCTCTCAAGGACATAAATTAGCTTCATTTTTTTGAATCTGTATAATTTTGTCT
rJMSF045K02+ TAGGCAGTCTCTCAAGGACATAAATTAGCTTCATTTTTTTGAATCTGTATAATTTTGTCT
                      ____________________________________________________________
consensus TAGGCAGTCTCTCAAGGACATAAATTAGCTTCATTTTTTTGAATCTGTATAATTTTGTCT
 
. : . : . : . : . : . :
rJMSF050A20+ GCGCAAAATTT
rJMSF013F09+ GCGCAAAATTTAGATAC
rJMSF045K02+ GCGCAAAATTTAGATACAGTATATGTTCTCAATAAAATTTTCATGTCTTATCACTTCTAG
                      ____________________________________________________________
consensus GCGCAAAATTTAGATACAGTATATGTTCTCAATAAAATTTTCATGTCTTATCACTTCTAG