| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF013F09 | Sequence | 260 | 003866 (3) | 747 | 005813 (3) | gb|KJB52888.1| | 2e-85 | hypothetical protein B456_008G282000 [Gossypium raimondii] | |||
| JMSF045K02 | Sequence | 774 | 003866 (3) | ref|XP_009784249.1| | 3e-94 | PREDICTED: phosphoglucomutase, chloroplastic isoform X2 [Nicotiana sylvestris] | 809 | 005813 (3) | sp|Q9SM59.1|PGMP_PEA | 3e-89 | RecName: Full=Phosphoglucomutase, chloroplastic; Short=PGM; AltName: Full=Gluco |
| JMSF050A20 | Sequence | 694 | 003866 (3) | ref|XP_009784250.1| | 2e-74 | PREDICTED: phosphoglucomutase, chloroplastic isoform X3 [Nicotiana sylvestris] | 737 | 005813 (3) | gb|KJB52888.1| | 1e-108 | hypothetical protein B456_008G282000 [Gossypium raimondii] |
This contig is upended
. : . : . : . : . : . :
rJMSF050A20+ AA
rJMSF013F09+ AA
rJMSF045K02+ GGGACAGGTTCTGACCACATCCGTGAGAA
____________________________________________________________
consensus GGGACAGGTTCTGACCACATCCGTGAGAA
. : . : . : . : . : . :
rJMSF050A20+ AGATGGTATATGGGCTGTATTAGCTNGGCTTTCAATAATTGCATATAGGAACAAGGACAA
rJMSF013F09+ AGATGGTATATGGGCTGTATTAGCTTGGCTTTCAATAATTGCATATAGGAACAAGGACAA
rJMSF045K02+ AGATGGTATATGGGCTGTATTAGCTTGGCTTTCAATAATTGCATATAGGAACAAGGACAA
____________________________________________________________
consensus AGATGGTATATGGGCTGTATTAGCTTGGCTTTCAATAATTGCATATAGGAACAAGGACAA
. : . : . : . : . : . :
rJMSF050A20+ GAAACCAGGGGAGGAATTGG-TTTCTGTTGGTGATGTTGTCAAGCAGCATTGGGCAACTT
rJMSF013F09+ GAAACCAGGGGAGGAATTGG-TTTCTGTTGGTGATGTTGTCAAGCAGCATTGGGCAACTT
rJMSF045K02+ GAAACCAGGGGAGGAATTGGTTTTCTGTTGGTGATGTTGTCAAGCAGCATTGGGCAACTT
____________________________________________________________
consensus GAAACCAGGGGAGGAATTGG-TTTCTGTTGGTGATGTTGTCAAGCAGCATTGGGCAACTT
. : . : . : . : . : . :
rJMSF050A20+ ATGGGAGGAATTTCTTTTCTAGATATGACTATGAGGAATGTGAATCTGAAGGAGCCAATA
rJMSF013F09+ ATGCGAGGAA-TTCTTTTCTAGATATGACTATGAGGAATGTGAATCTGAAGGAGCCAATA
rJMSF045K02+ ATGGGAGGAATTTCTTTTCTAGATATGACTATGAGGAATGTGAATCTGAAGGAGCCAATA
____________________________________________________________
consensus ATGGGAGGAATTTCTTTTCTAGATATGACTATGAGGAATGTGAATCTGAAGGAGCCAATA
. : . : . : . : . : . :
rJMSF050A20+ AGATGGTTGCATATCTTAGAGAACTAATCTCTACCAGTAAGGCTGGTGATAAGTATGGAA
rJMSF013F09+ AGATGGTTGCATATCTTAGAGAACTAATCTCTACCAGTAAGGCTGGTGATAAGTATGGAA
rJMSF045K02+ AGATGGTTGCATATCTTAGAGAACTAATCTCTACCAGTAAGGCTGGTGATAAGTATGGAA
____________________________________________________________
consensus AGATGGTTGCATATCTTAGAGAACTAATCTCTACCAGTAAGGCTGGTGATAAGTATGGAA
. : . : . : . : . : . :
rJMSF050A20+ GTTATATCCTCAAATTTGCTGATGACTTCTCCTATGTTGATCCAGTAGATGGAAGTGTTG
rJMSF013F09+ GTTATATCCTCAAATTTGCTGATGACTTCTCCTATGTTGATCCAGTAGATGGAAGTGTTG
rJMSF045K02+ GTTATATCCTCAAATTTGCTGATGACTTCTCCTATGTTGATCCAGTAGATGGAAGTGTTG
____________________________________________________________
consensus GTTATATCCTCAAATTTGCTGATGACTTCTCCTATGTTGATCCAGTAGATGGAAGTGTTG
. : . : . : . : . : . :
rJMSF050A20+ CATCCAAACAGGGGGTTCGATTTGTGTTCACTGATGGATCAAGGATCATCTTTAGATTAT
rJMSF013F09+ CATCCAAACAGGGGGTTCGATTTGTGTTCACTGATGGATCAAGGATCATCTTTAGATTAT
rJMSF045K02+ CATCCAAACAGGGGGTTCGATTTGTGTTCACTGATGGATCAAGGATCATCTTTAGATTAT
____________________________________________________________
consensus CATCCAAACAGGGGGTTCGATTTGTGTTCACTGATGGATCAAGGATCATCTTTAGATTAT
. : . : . : . : . : . :
rJMSF050A20+ CGGGTACTGGTTCTGCTGGTGCAACAGTAAGAGTGTATATTGAACAGTTTGAGTCTGATG
rJMSF013F09+ CGGGTACTGGTTCTGCTGGTGCAACAGTAAGAGTGTATATTGAACAGTTTGAGTCTGATG
rJMSF045K02+ CGGGTACTGGTTCTGCTGGTGCAACAGTAAGAGTGTATATTGAACAGTTTGAGTCTGATG
____________________________________________________________
consensus CGGGTACTGGTTCTGCTGGTGCAACAGTAAGAGTGTATATTGAACAGTTTGAGTCTGATG
. : . : . : . : . : . :
rJMSF050A20+ CCTCGAAGCATGACGTGGATGCCCAAATTGCATTGAAACCATTGATAGACCTCGCTCTGT
rJMSF013F09+ CCTCGAAGCATGACGTGGATGCCCAAATTGCATTGAAACCATTGATAGACCTCGCTCTGT
rJMSF045K02+ CCTCGAAGCATGACGTGGATGCCCAAATTGCATTGAAACCATTGATAGACCTCGCTCTGT
____________________________________________________________
consensus CCTCGAAGCATGACGTGGATGCCCAAATTGCATTGAAACCATTGATAGACCTCGCTCTGT
. : . : . : . : . : . :
rJMSF050A20+ CTTTATCAAAGCTAAAGGAATTTACCGGAAGAGAGAAGCCAACTGTTATAACATAAAGAA
rJMSF013F09+ CTTTATCAAAGCTAAAGGAATTTACCGGAAGAGAGAAGCCAACTGTTATAACATAAAGAA
rJMSF045K02+ CTTTATCAAAGCTAAAGGAATTTACCGGAAGAGAGAAGCCAACTGTTATAACATAAAGAA
____________________________________________________________
consensus CTTTATCAAAGCTAAAGGAATTTACCGGAAGAGAGAAGCCAACTGTTATAACATAAAGAA
. : . : . : . : . : . :
rJMSF050A20+ CACACTCAACTTTAATTTTATGCCTGTTGGAAGCATCTCAATGAGAACTGTAGCAGGTCG
rJMSF013F09+ CACACTCAACTTTAATTTTATGCCTGTTGGAAGCATCTCAATGAGAACTGTAGCAGGTCG
rJMSF045K02+ CACACTCAACTTTAATTTTATGCCTGTTGGAAGCATCTCAATGAGAACTGTAGCAGGTCG
____________________________________________________________
consensus CACACTCAACTTTAATTTTATGCCTGTTGGAAGCATCTCAATGAGAACTGTAGCAGGTCG
. : . : . : . : . : . :
rJMSF050A20+ CAAACTCACTCTTTCCTCTACTTGTTACATTATGTATTGTTTATTCTTCTTGTTGTATGG
rJMSF013F09+ CAAACTCCCTCTTTCCTCTACTTGTTACATTATGTATTGTTTATTCTTCTTGTTGTATGG
rJMSF045K02+ CAAACTCCCTCTTTCCTCTACTTGTTACATTATGTATTGTTTATTCTTCTTGTTGTATGG
____________________________________________________________
consensus CAAACTCCCTCTTTCCTCTACTTGTTACATTATGTATTGTTTATTCTTCTTGTTGTATGG
. : . : . : . : . : . :
rJMSF050A20+ TAGGCAGTCTCTCAAGGACATAAATTAGCTTCATTTTTTTGAATCTGTATAATTTTGTCT
rJMSF013F09+ TAGGCAGTCTCTCAAGGACATAAATTAGCTTCATTTTTTTGAATCTGTATAATTTTGTCT
rJMSF045K02+ TAGGCAGTCTCTCAAGGACATAAATTAGCTTCATTTTTTTGAATCTGTATAATTTTGTCT
____________________________________________________________
consensus TAGGCAGTCTCTCAAGGACATAAATTAGCTTCATTTTTTTGAATCTGTATAATTTTGTCT
. : . : . : . : . : . :
rJMSF050A20+ GCGCAAAATTT
rJMSF013F09+ GCGCAAAATTTAGATAC
rJMSF045K02+ GCGCAAAATTTAGATACAGTATATGTTCTCAATAAAATTTTCATGTCTTATCACTTCTAG
____________________________________________________________
consensus GCGCAAAATTTAGATACAGTATATGTTCTCAATAAAATTTTCATGTCTTATCACTTCTAG