Contig 005811:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF045G03+                                                              GGGACNTG
                      ____________________________________________________________
consensus                                                                 GGGACNTG
 
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rJMSF003A18+                                               AGCCGATATTGAACCGGATCACT
rJMSF045G03+          ATCGTGAAGTAACGCAGATGTTTGTTTCACCATTTTCAGCCGATATTGAACCGGATCACT
                      ____________________________________________________________
consensus             ATCGTGAAGTAACGCAGATGTTTGTTTCACCATTTTCAGCCGATATTGAACCGGATCACT
 
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rJMSF003A18+          TTGTGGACTACTTCAAAATGGATTTTCTCTACCAATTGATGCTGTCTCAGGATCCTTATA
rJMSF045G03+          TTGTGGACTACTTCAAAATGGATTTTCTCTACCAATTGATGCTGTCTCAGGATCCTTATA
                      ____________________________________________________________
consensus             TTGTGGACTACTTCAAAATGGATTTTCTCTACCAATTGATGCTGTCTCAGGATCCTTATA
 
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rJMSF003A18+          ACACGCTTCTACTATGCAATTACGCCCAGTTTCTGCATCTTGTTGCACAGGATTACGATA
rJMSF045G03+          ACACGCTTCTACTATGCAATTACGCCCAGTTTCTGCATCTTGTTGCACAGGATTACGATA
                      ____________________________________________________________
consensus             ACACGCTTCTACTATGCAATTACGCCCAGTTTCTGCATCTTGTTGCACAGGATTACGATA
 
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rJMSF003A18+          GGGCAGAGGAGTGTTTCAAACGGGGCATGGAAGTGGAGCCTCCCGACGCTGAAGTCCTCA
rJMSF045G03+          GGGCAGAGGAGTGTTTCAAACGGGGCATGGAAGTGGAGCCTCCCGACGCTGAAGTCCTCA
                      ____________________________________________________________
consensus             GGGCAGAGGAGTGTTTCAAACGGGGCATGGAAGTGGAGCCTCCCGACGCTGAAGTCCTCA
 
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rJMSF003A18+          GCCAGTATGCGACGTTTTTGTGGACAGTAAGGAAGGATTTGAGCGAGGCAGAAGAAATGT
rJMSF045G03+          GCCAGTATGCGACGTTTTTGTGGACAGTAAGGAAGGATTTGAGCGAGGCAGAAGAAATGT
                      ____________________________________________________________
consensus             GCCAGTATGCGACGTTTTTGTGGACAGTAAGGAAGGATTTGAGCGAGGCAGAAGAAATGT
 
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rJMSF003A18+          ACCGACAGGCGATAGTTGTTGAGCCTGGGAGTCCATATTATGCAGCCCGGTATGCCAATT
rJMSF045G03+          ACCGACAGGCGATAGTTGTTGAGCCTGGGAGTCCATATTATGCAGCCCGGTATGCCAATT
                      ____________________________________________________________
consensus             ACCGACAGGCGATAGTTGTTGAGCCTGGGAGTCCATATTATGCAGCCCGGTATGCCAATT
 
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rJMSF003A18+          TCCTATGGAGCAATGGCGGCGAGGAGAGCTGCTCTCGTACGAATTCGTCTTGTGATAATA
rJMSF045G03+          TCCTATGGAGCAATGGCGGCGAGGAGAGCTGCTCTCGTACGAATTCGTCTTGTGATAATA
                      ____________________________________________________________
consensus             TCCTATGGAGCAATGGCGGCGAGGAGAGCTGCTCTCGTACGAATTCGTCTTGTGATAATA
 
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rJMSF003A18+          TTAAGACTTTAAATTCTTGACACAACAGAGCACTGAAGAGTGAAGATCACCACCAGCAAC
rJMSF045G03+          TTAAGACTTTAAATTCTTGACACAACAGAGCACTGAAGAGTGAAGATCACCACCAGCAAC
                      ____________________________________________________________
consensus             TTAAGACTTTAAATTCTTGACACAACAGAGCACTGAAGAGTGAAGATCACCACCAGCAAC
 
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rJMSF003A18+          CTCAGCTCATAGTGCACTTGTCAAGAATTCATGCTGCTCTGAGCATGGTGTAACTAGCAC
rJMSF045G03+          CTCAGCTCATAGTGCACTTGTCAAGAATTCATGCTGCTCTGAGCATGGTGTAACTAGCAC
                      ____________________________________________________________
consensus             CTCAGCTCATAGTGCACTTGTCAAGAATTCATGCTGCTCTGAGCATGGTGTAACTAGCAC
 
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rJMSF003A18+          AAAGTTAAAAAAAGGTGAGTCTATAGTGATTAGATTGAAGTAGAAAAACTATCTAAAAAT
rJMSF045G03+          AAAGTTAAAAAAAGGTGAGTCTATAGTGATTAGATTGAAGTAGAAAAACTATCTAAAAAT
                      ____________________________________________________________
consensus             AAAGTTAAAAAAAGGTGAGTCTATAGTGATTAGATTGAAGTAGAAAAACTATCTAAAAAT
 
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rJMSF003A18+          TGATAAAATTTGTAGCATTATCATTCTATACTTGGAGTATGTGTTGAATAATCTCACAAG
rJMSF045G03+          TGATAAAATTTGTAGCATTATCATTCTATACTTGGAGTATGTGTTGAATAATCTCACAAG
                      ____________________________________________________________
consensus             TGATAAAATTTGTAGCATTATCATTCTATACTTGGAGTATGTGTTGAATAATCTCACAAG
 
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rJMSF003A18+          TTGGTCGAATGATTGGCTTGGTAACCACAAGGATTTAAGTTTGACTCTTTGTGGGAGTTG
rJMSF045G03+          TTGGTCGAATGATTGGCTTGGTAACCACAAGGATTTAAGTTTGACTCTTTGTGGGAGTTG
                      ____________________________________________________________
consensus             TTGGTCGAATGATTGGCTTGGTAACCACAAGGATTTAAGTTTGACTCTTTGTGGGAGTTG
 
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rJMSF003A18+          TTTATTAGTTTTTATTTTTTTTGTTTAAGTTGGTC                         
rJMSF045G03+          TTTATTAGTTTTTATTTTTTTTGTTTAAGTTGGTCAGTTGTGAACAATTTAAATTGATTA
                      ____________________________________________________________
consensus             TTTATTAGTTTTTATTTTTTTTGTTTAAGTTGGTCAGTTGTGAACAATTTAAATTGATTA