Contig 005810:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025K05Sequence531000892 (4)gb|AAS79594.1|5e-54putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical prote750005810 (3)gb|AAS79594.1|1e-103putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical prote
JMSF038O04Sequence552000892 (4)gb|AAS79594.1|1e-54putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical prote911005810 (3)gb|AAS79594.1|2e-114putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical prote
JMSF045F10Sequence672000892 (4)gb|AAS79594.1|5e-66putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical prote840005810 (3)gb|AAS79594.1|8e-124putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical prote

Alignment

This contig is upended


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rJMSF038O04+                                                       CATGCGCCCATCGAT
                      ____________________________________________________________
consensus                                                          CATGCGCCCATCGAT
 
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rJMSF038O04+          TATGTCGAGAGTGCNTCTTAGCAAGTTGGAGAAGTTNTGCATCTGGTTTTTGTCCTGTTT
                      ____________________________________________________________
consensus             TATGTCGAGAGTGCNTCTTAGCAAGTTGGAGAAGTTNTGCATCTGGTTTTTGTCCTGTTT
 
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rJMSF038O04+          GTAGAAAGACTGTCAGCAAGCAGGAACTGATCACAGCACCAACAGATAGCCGTTTCCAGA
rJMSF045F10+              AAAGACTGTCAGCAAGCAGGAACTGATCACAGCACCAACAGATAGCCGTTTCCAGA
                      ____________________________________________________________
consensus             GTAGAAAGACTGTCAGCAAGCAGGAACTGATCACAGCACCAACAGATAGCCGTTTCCAGA
 
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rJMSF025K05+                                GGAATCATCGAAAGTTACTGCATTGTTGCATGAACTAG
rJMSF038O04+          TAGATGTTGAAAAGAATTGGGTGGAATCATCGAAAGTTACTGCATTGTTGCATGAACTAG
rJMSF045F10+          TAGATGTTGAAAAGAATTGGGTGGAATCATCGAAAGTTACTGCATTGTTGCATGAACTAG
                      ____________________________________________________________
consensus             TAGATGTTGAAAAGAATTGGGTGGAATCATCGAAAGTTACTGCATTGTTGCATGAACTAG
 
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rJMSF025K05+          AACAATTACGTGCTGTAAACTCCAAAAGCATTGTTTTTAGTCAGTGGACTGCCTTTTTGG
rJMSF038O04+          AACAATTACGTGCTGTAAACTCCAAAAGCATTGTTTTTAGTCAGTGGACTGCCTTTTTGG
rJMSF045F10+          AACAATTACGTGCTGTAAACTCCAAAAGCATTGTTTTTAGTCAGTGGACTGCCTTTTTGG
                      ____________________________________________________________
consensus             AACAATTACGTGCTGTAAACTCCAAAAGCATTGTTTTTAGTCAGTGGACTGCCTTTTTGG
 
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rJMSF025K05+          ACCTCTTGCAAATTGCTCTTGCTCGGAATGATATCCCTTTTCTTCGCCTTGATGGGACTC
rJMSF038O04+          ACCTCTTGCAAATTGCTCTTGCTCGGAATGATATCCCTTTTCTTCGCCTTGATGGGACTC
rJMSF045F10+          ACCTCTTGCAAATTGCTCTTGCTCGGAATGATATCCCTTTTCTTCGCCTTGATGGGACTC
                      ____________________________________________________________
consensus             ACCTCTTGCAAATTGCTCTTGCTCGGAATGATATCCCTTTTCTTCGCCTTGATGGGACTC
 
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rJMSF025K05+          TAAACCAGCAACAGCGTGAGAAAGTAATAAAAAAATTTTCAGAAGAAGATAGTGTTTTGG
rJMSF038O04+          TAAACCAGCAACAGCGTGAGAAAGTAATAAAAAAATTTTCAGAAGAAGATAGTGTTTTG-
rJMSF045F10+          TAAACCAGCAACAGCGTGAGAAAGTAATAAAAAAATTTTCAGAAGAAGATAGTGTTTTGG
                      ____________________________________________________________
consensus             TAAACCAGCAACAGCGTGAGAAAGTAATAAAAAAATTTTCAGAAGAAGATAGTGTTTTGG
 
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rJMSF025K05+          TGTTGTTAATGTCATTGAAGGCTGGTGGTGTCGGAATAAACCTGACGGCAGCATCCAATG
rJMSF038O04+          -GTTGTTAATGTCATTGAAGGCTGGTGGTGTCGGAATAAACCTGACGGCAGCATCCAATG
rJMSF045F10+          TGTTGTTAATGTCATTGAAGGCTGGTGGTGTCGGAATAAACCTGACGGCAGCATCCAATG
                      ____________________________________________________________
consensus             TGTTGTTAATGTCATTGAAGGCTGGTGGTGTCGGAATAAACCTGACGGCAGCATCCAATG
 
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rJMSF025K05+          CTTTTGTCTTGGATCCATGGTGGAATCCGGCTGTGGAGGAACAAGCTGTGATGCGTGTCC
rJMSF038O04+          CTTTTGTCTTGGATCCATGGTGGAATCCGGCTGTGGAGGAACAAGCTGTGATGCGTGTCC
rJMSF045F10+          CTTTTGTCTTGGATCCATGGTGGAATCCGGCTGTGGAGGAACAAGCTGTGATGCGTGTCC
                      ____________________________________________________________
consensus             CTTTTGTCTTGGATCCATGGTGGAATCCGGCTGTGGAGGAACAAGCTGTGATGCGTGTCC
 
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rJMSF025K05+          ATCGTATTGGACAAACAAAAAGAGTTGCAATCAAACGGTTCATTGTGAAGGGAACAGTTG
rJMSF038O04+          ATCGTATTGGACAAACAAAAAGAGTTGCAATCAAACGGTTCATTGTGAAGGGAACAGTTG
rJMSF045F10+          ATCGTATTGGACAAACAAAAAGAGTTGCAATCAAACGGTTCATTGTGAAGGGAACAGTTG
                      ____________________________________________________________
consensus             ATCGTATTGGACAAACAAAAAGAGTTGCAATCAAACGGTTCATTGTGAAGGGAACAGTTG
 
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rJMSF025K05+          AGGAGAGAATGGAGGCAGTGCAAGCCAGGAAACAGCGTATGATTTCTGGCGCCCTAACAG
rJMSF038O04+          AGGAGAGAATGGAGGCAGTGCAAGCCAGGAAACAGCGTATGATTTCTGGCGCCCTAACAG
rJMSF045F10+          AGGAGAGAATGGAGGCAGTGCAAGCCAGGAAACAGCGTATGATTTCTGGCGCCCTAACAG
                      ____________________________________________________________
consensus             AGGAGAGAATGGAGGCAGTGCAAGCCAGGAAACAGCGTATGATTTCTGGCGCCCTAACAG
 
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rJMSF025K05+          ACCAAGAAGTGCGAACAGCACGAATTGAGGAACTTAAGATGTTTTTCACATAGAAAGCTT
rJMSF038O04+          ACCAAGAAGTGCGAACAGCACGAATTGAGGAACTTAAGATGTTTTTCACATAGAAAGCTT
rJMSF045F10+          ACCAAGAAGTGCGAACAGCACGAATTGAGGAACTTAAGATGTTTTTCACATAGAAAGCTT
                      ____________________________________________________________
consensus             ACCAAGAAGTGCGAACAGCACGAATTGAGGAACTTAAGATGTTTTTCACATAGAAAGCTT
 
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rJMSF025K05+          CTTCTTCTACTACTTGATCTCTGAAGCTTTTCATTTCAGAGTAAGAACGAAACTCAACAA
rJMSF038O04+          CTTCTTCTACTACTTGATCTCTGAAGCTTTTCATTTCAGAGTAAGAACGAAACTCAACAA
rJMSF045F10+          CTTCTTCTACTACTTGATCTCTGAAGCTTTTCATTTCAGAGTAAGAACGAAACTCAACAA
                      ____________________________________________________________
consensus             CTTCTTCTACTACTTGATCTCTGAAGCTTTTCATTTCAGAGTAAGAACGAAACTCAACAA
 
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rJMSF025K05+          CGCAAAACAACTGCTCGTGTAGATGTGTACTAAATGTATTATAACTTTTCCGGTCACAAA
rJMSF038O04+          CGCAAAACAACTGCTCGTGTAGATGTGTACTAAATGTATTATAACTTTTCCGGTCACAAA
rJMSF045F10+          CGCAAAACAACTGCTCGTGTAGATGTGTACTAAATGTATTATAACTTTTCCGGTCACAAA
                      ____________________________________________________________
consensus             CGCAAAACAACTGCTCGTGTAGATGTGTACTAAATGTATTATAACTTTTCCGGTCACAAA
 
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rJMSF025K05+          TGCATCCGGGATTGGAGATTTGGCAGTAAGACTGCTTGCAGAGTTAGGAGTACATTATTC
rJMSF038O04+          TGCATCCGGGATTGGAGATTTGGCAGTAAGACTGCTTGCAGAGTTAGGAGTACATTATTC
rJMSF045F10+          TGCATCCGGGATTGGAGATTTGGCAGTAAGACTGCTTGCAGAGTTAGGAGTACA---TTC
                      ____________________________________________________________
consensus             TGCATCCGGGATTGGAGATTTGGCAGTAAGACTGCTTGCAGAGTTAGGAGTACATTATTC
 
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rJMSF025K05+          TAGTGTTCTGTTGTAATGCTCAACAACACATTAGAGATAGTTT                 
rJMSF038O04+          TAGTGTTCTGTTGTAATGCTCAACAACACATTAGAGATAGTTT                 
rJMSF045F10+          TAGTGTTCTGTTGTAATGCTCAACAACACATTAGAGATAGTTTTGAAGCCCCTCAACTGC
                      ____________________________________________________________
consensus             TAGTGTTCTGTTGTAATGCTCAACAACACATTAGAGATAGTTTTGAAGCCCCTCAACTGC