Contig 005810:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025K05Sequence531000892 (4)gb|AAS79594.1|5e-54putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical prote750005810 (3)gb|AAS79594.1|1e-103putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical prote
JMSF038O04Sequence552000892 (4)gb|AAS79594.1|1e-54putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical prote911005810 (3)gb|AAS79594.1|2e-114putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical prote
JMSF045F10Sequence672000892 (4)gb|AAS79594.1|5e-66putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical prote840005810 (3)gb|AAS79594.1|8e-124putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical prote

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038O04+ CATGCGCCCATCGAT
                      ____________________________________________________________
consensus CATGCGCCCATCGAT
 
. : . : . : . : . : . :
rJMSF038O04+ TATGTCGAGAGTGCNTCTTAGCAAGTTGGAGAAGTTNTGCATCTGGTTTTTGTCCTGTTT
                      ____________________________________________________________
consensus TATGTCGAGAGTGCNTCTTAGCAAGTTGGAGAAGTTNTGCATCTGGTTTTTGTCCTGTTT
 
. : . : . : . : . : . :
rJMSF038O04+ GTAGAAAGACTGTCAGCAAGCAGGAACTGATCACAGCACCAACAGATAGCCGTTTCCAGA
rJMSF045F10+ AAAGACTGTCAGCAAGCAGGAACTGATCACAGCACCAACAGATAGCCGTTTCCAGA
                      ____________________________________________________________
consensus GTAGAAAGACTGTCAGCAAGCAGGAACTGATCACAGCACCAACAGATAGCCGTTTCCAGA
 
. : . : . : . : . : . :
rJMSF025K05+ GGAATCATCGAAAGTTACTGCATTGTTGCATGAACTAG
rJMSF038O04+ TAGATGTTGAAAAGAATTGGGTGGAATCATCGAAAGTTACTGCATTGTTGCATGAACTAG
rJMSF045F10+ TAGATGTTGAAAAGAATTGGGTGGAATCATCGAAAGTTACTGCATTGTTGCATGAACTAG
                      ____________________________________________________________
consensus TAGATGTTGAAAAGAATTGGGTGGAATCATCGAAAGTTACTGCATTGTTGCATGAACTAG
 
. : . : . : . : . : . :
rJMSF025K05+ AACAATTACGTGCTGTAAACTCCAAAAGCATTGTTTTTAGTCAGTGGACTGCCTTTTTGG
rJMSF038O04+ AACAATTACGTGCTGTAAACTCCAAAAGCATTGTTTTTAGTCAGTGGACTGCCTTTTTGG
rJMSF045F10+ AACAATTACGTGCTGTAAACTCCAAAAGCATTGTTTTTAGTCAGTGGACTGCCTTTTTGG
                      ____________________________________________________________
consensus AACAATTACGTGCTGTAAACTCCAAAAGCATTGTTTTTAGTCAGTGGACTGCCTTTTTGG
 
. : . : . : . : . : . :
rJMSF025K05+ ACCTCTTGCAAATTGCTCTTGCTCGGAATGATATCCCTTTTCTTCGCCTTGATGGGACTC
rJMSF038O04+ ACCTCTTGCAAATTGCTCTTGCTCGGAATGATATCCCTTTTCTTCGCCTTGATGGGACTC
rJMSF045F10+ ACCTCTTGCAAATTGCTCTTGCTCGGAATGATATCCCTTTTCTTCGCCTTGATGGGACTC
                      ____________________________________________________________
consensus ACCTCTTGCAAATTGCTCTTGCTCGGAATGATATCCCTTTTCTTCGCCTTGATGGGACTC
 
. : . : . : . : . : . :
rJMSF025K05+ TAAACCAGCAACAGCGTGAGAAAGTAATAAAAAAATTTTCAGAAGAAGATAGTGTTTTGG
rJMSF038O04+ TAAACCAGCAACAGCGTGAGAAAGTAATAAAAAAATTTTCAGAAGAAGATAGTGTTTTG-
rJMSF045F10+ TAAACCAGCAACAGCGTGAGAAAGTAATAAAAAAATTTTCAGAAGAAGATAGTGTTTTGG
                      ____________________________________________________________
consensus TAAACCAGCAACAGCGTGAGAAAGTAATAAAAAAATTTTCAGAAGAAGATAGTGTTTTGG
 
. : . : . : . : . : . :
rJMSF025K05+ TGTTGTTAATGTCATTGAAGGCTGGTGGTGTCGGAATAAACCTGACGGCAGCATCCAATG
rJMSF038O04+ -GTTGTTAATGTCATTGAAGGCTGGTGGTGTCGGAATAAACCTGACGGCAGCATCCAATG
rJMSF045F10+ TGTTGTTAATGTCATTGAAGGCTGGTGGTGTCGGAATAAACCTGACGGCAGCATCCAATG
                      ____________________________________________________________
consensus TGTTGTTAATGTCATTGAAGGCTGGTGGTGTCGGAATAAACCTGACGGCAGCATCCAATG
 
. : . : . : . : . : . :
rJMSF025K05+ CTTTTGTCTTGGATCCATGGTGGAATCCGGCTGTGGAGGAACAAGCTGTGATGCGTGTCC
rJMSF038O04+ CTTTTGTCTTGGATCCATGGTGGAATCCGGCTGTGGAGGAACAAGCTGTGATGCGTGTCC
rJMSF045F10+ CTTTTGTCTTGGATCCATGGTGGAATCCGGCTGTGGAGGAACAAGCTGTGATGCGTGTCC
                      ____________________________________________________________
consensus CTTTTGTCTTGGATCCATGGTGGAATCCGGCTGTGGAGGAACAAGCTGTGATGCGTGTCC
 
. : . : . : . : . : . :
rJMSF025K05+ ATCGTATTGGACAAACAAAAAGAGTTGCAATCAAACGGTTCATTGTGAAGGGAACAGTTG
rJMSF038O04+ ATCGTATTGGACAAACAAAAAGAGTTGCAATCAAACGGTTCATTGTGAAGGGAACAGTTG
rJMSF045F10+ ATCGTATTGGACAAACAAAAAGAGTTGCAATCAAACGGTTCATTGTGAAGGGAACAGTTG
                      ____________________________________________________________
consensus ATCGTATTGGACAAACAAAAAGAGTTGCAATCAAACGGTTCATTGTGAAGGGAACAGTTG
 
. : . : . : . : . : . :
rJMSF025K05+ AGGAGAGAATGGAGGCAGTGCAAGCCAGGAAACAGCGTATGATTTCTGGCGCCCTAACAG
rJMSF038O04+ AGGAGAGAATGGAGGCAGTGCAAGCCAGGAAACAGCGTATGATTTCTGGCGCCCTAACAG
rJMSF045F10+ AGGAGAGAATGGAGGCAGTGCAAGCCAGGAAACAGCGTATGATTTCTGGCGCCCTAACAG
                      ____________________________________________________________
consensus AGGAGAGAATGGAGGCAGTGCAAGCCAGGAAACAGCGTATGATTTCTGGCGCCCTAACAG
 
. : . : . : . : . : . :
rJMSF025K05+ ACCAAGAAGTGCGAACAGCACGAATTGAGGAACTTAAGATGTTTTTCACATAGAAAGCTT
rJMSF038O04+ ACCAAGAAGTGCGAACAGCACGAATTGAGGAACTTAAGATGTTTTTCACATAGAAAGCTT
rJMSF045F10+ ACCAAGAAGTGCGAACAGCACGAATTGAGGAACTTAAGATGTTTTTCACATAGAAAGCTT
                      ____________________________________________________________
consensus ACCAAGAAGTGCGAACAGCACGAATTGAGGAACTTAAGATGTTTTTCACATAGAAAGCTT
 
. : . : . : . : . : . :
rJMSF025K05+ CTTCTTCTACTACTTGATCTCTGAAGCTTTTCATTTCAGAGTAAGAACGAAACTCAACAA
rJMSF038O04+ CTTCTTCTACTACTTGATCTCTGAAGCTTTTCATTTCAGAGTAAGAACGAAACTCAACAA
rJMSF045F10+ CTTCTTCTACTACTTGATCTCTGAAGCTTTTCATTTCAGAGTAAGAACGAAACTCAACAA
                      ____________________________________________________________
consensus CTTCTTCTACTACTTGATCTCTGAAGCTTTTCATTTCAGAGTAAGAACGAAACTCAACAA
 
. : . : . : . : . : . :
rJMSF025K05+ CGCAAAACAACTGCTCGTGTAGATGTGTACTAAATGTATTATAACTTTTCCGGTCACAAA
rJMSF038O04+ CGCAAAACAACTGCTCGTGTAGATGTGTACTAAATGTATTATAACTTTTCCGGTCACAAA
rJMSF045F10+ CGCAAAACAACTGCTCGTGTAGATGTGTACTAAATGTATTATAACTTTTCCGGTCACAAA
                      ____________________________________________________________
consensus CGCAAAACAACTGCTCGTGTAGATGTGTACTAAATGTATTATAACTTTTCCGGTCACAAA
 
. : . : . : . : . : . :
rJMSF025K05+ TGCATCCGGGATTGGAGATTTGGCAGTAAGACTGCTTGCAGAGTTAGGAGTACATTATTC
rJMSF038O04+ TGCATCCGGGATTGGAGATTTGGCAGTAAGACTGCTTGCAGAGTTAGGAGTACATTATTC
rJMSF045F10+ TGCATCCGGGATTGGAGATTTGGCAGTAAGACTGCTTGCAGAGTTAGGAGTACA---TTC
                      ____________________________________________________________
consensus TGCATCCGGGATTGGAGATTTGGCAGTAAGACTGCTTGCAGAGTTAGGAGTACATTATTC
 
. : . : . : . : . : . :
rJMSF025K05+ TAGTGTTCTGTTGTAATGCTCAACAACACATTAGAGATAGTTT
rJMSF038O04+ TAGTGTTCTGTTGTAATGCTCAACAACACATTAGAGATAGTTT
rJMSF045F10+ TAGTGTTCTGTTGTAATGCTCAACAACACATTAGAGATAGTTTTGAAGCCCCTCAACTGC
                      ____________________________________________________________
consensus TAGTGTTCTGTTGTAATGCTCAACAACACATTAGAGATAGTTTTGAAGCCCCTCAACTGC