| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005P03 | Sequence | 689 | 005809 (11) | emb|CDP01640.1| | 2e-46 | unnamed protein product [Coffea canephora] | |||||
| JMFN012H06 | Sequence | 622 | 005809 (11) | emb|CDP01640.1| | 3e-59 | unnamed protein product [Coffea canephora] | |||||
| JMFN014B12 | Sequence | 545 | 005809 (11) | emb|CDP01640.1| | 2e-46 | unnamed protein product [Coffea canephora] | |||||
| JMFN018A07 | Sequence | 626 | 005809 (11) | emb|CDP01640.1| | 3e-59 | unnamed protein product [Coffea canephora] | |||||
| JMFN046M23 | Sequence | 610 | 005809 (11) | emb|CDP01640.1| | 3e-59 | unnamed protein product [Coffea canephora] | |||||
| JMSF006M23 | Sequence | 369 | 005809 (11) | ref|XP_009765334.1| | 153 | PREDICTED: uncharacterized protein LOC104216893 [Nicotiana sylvestris] | 360 | 005809 (11) | ref|NP_197221.1| | 4e-18 | uncharacterized protein [Arabidopsis thaliana] ref|XP_006286604.1| hypothetical |
| JMSF045B01 | Sequence | 764 | 005809 (11) | emb|CDP01640.1| | 2e-58 | unnamed protein product [Coffea canephora] | 724 | 005809 (11) | emb|CDP01640.1| | 1e-58 | unnamed protein product [Coffea canephora] |
| JMSF045M02 | Sequence | 767 | 005809 (11) | emb|CDP01640.1| | 2e-58 | unnamed protein product [Coffea canephora] | 654 | 005809 (11) | emb|CDP01640.1| | 5e-59 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF045M02+ TGTCGAACAGAAATTTATGTT
____________________________________________________________
consensus TGTCGAACAGAAATTTATGTT
. : . : . : . : . : . :
JMFN014B12+ CCAAAATATGCATAAGATACCAAAATCAAAT
rJMFF005P03- AATCAAAT
JMSF045M02+ TAAATAACAGCATTAAGAGAGACAAAAATCCAAAATATGCATAAGATACCAAAATCAAAT
rJMSF045M02- CCAAAATATGCATAAGATACCAAAATCAAAT
JMFN012H06- ACCAAAATCAAAT
JMSF045B01+ CCAAAATATGCATAAGATACCAAAATCAAAT
____________________________________________________________
consensus TAAATAACAGCATTAAGAGAGACAAAAATCCAAAATATGCATAAGATACCAAAATCAAAT
. : . : . : . : . : . :
JMFN014B12+ ACACTG-TCGTAATATATCAGTACAACATCGTAATAATCGAGAGAACAGATAGTACAAAA
rJMFF005P03- ACACTG-TCGTAATATATCAGTACAACATCGTAATAATCGAGAGAACAGATAGTACAAAA
rJMSF006M23- TCGTAATATATCAGTACAACATCGTAATAATCGAGAGAACAGATAGTACAAAA
JMSF045M02+ ACACTG-TCGTAATATATCAGTACAACATCGTAATAATCGAGAGAACAGATAGTACAAAA
rJMSF045M02- ACACTGNTCGTAATATATCAGTACAACATCGTAATAATCGAGAGAACAGATAGTACAAAA
JMFN012H06- ACACTG-TCGTAATATATCAGTACAACATCGTAATAATCGAGAGAACAGATAGTACAAAA
JMSF045B01+ ACACTG-TCGTAATATATCAGTACAACATCGTAATAATCGAGAGAACAGATAGTACAAAA
JMFN018A07+ AGAACAGATAGTACAAAA
JMFN046M23+ GTAATAATCGAGAGACCAGATAGTACAAAA
rJMSF045B01- TAATATATCAGTACAACATCGTAATAATCGAGAGAACAGATAGTACAAAA
____________________________________________________________
consensus ACACTG-TCGTAATATATCAGTACAACATCGTAATAATCGAGAGAACAGATAGTACAAAA
. : . : . : . : . : . :
JMFN014B12+ ATACGAAAGTGAAGCAATGCGAAAAACGCAGACGACAATGGACAGTCCATATAGAAATAG
rJMFF005P03- ATACGAAAGTGAAGCAATGCGAAAAACGCAGACGACAATGGACAGTCCATATAGAAATAG
rJMSF006M23- ATACGAAAGTGAAGCAATGCGAAAAACGCAGACGACAATGGACAGTCCATATAGAAATAG
JMSF045M02+ ATACGAAAGTGAAGCAATGCGAAAAACGCAGACGACAATGGACAGTCCATATAGAAATAG
rJMSF045M02- ATACGAAAGTGAAGCAATGCGAAAAACGCAGACGACAATGGACAGTCCATATAGAAATAG
JMFN012H06- ATACGAAAGTGAAGCAATGCGAAAAACGCAGACGACAATGGACAGTCCATATAGAAATAG
JMSF045B01+ ATACGAAAGTGAAGCAATGCGAAAAACGCAGACGACAATGGACAGTCCATATAGAAATAG
JMFN018A07+ ATACGANAGTGGAGCAATGCGAAAAACGCAGACGACAATGGACAGTCCATATAGAAATAG
JMFN046M23+ ATTCGAAAGTGAAGCAATGCGAANAACGCAGACGACAATGGACAGTCCATATAGAAATAG
rJMSF045B01- ATACGAAAGTGAAGCAATGCGAAAAACGCAGACGACAATGGACAGTCCATATAGAAATAG
____________________________________________________________
consensus ATACGAAAGTGAAGCAATGCGAAAAACGCAGACGACAATGGACAGTCCATATAGAAATAG
. : . : . : . : . : . :
JMFN014B12+ CAGCAACAAAAGGGGGGCTTATCTGATCCGGAAACTAAAAATGGGTGCATGTTGACCCGA
rJMFF005P03- CAGCAACAAAAGGGGGGCTTATCTGATCCGGAAACTAAAAATGGGTGCATGTTGACCCGA
rJMSF006M23- CAGCAACAAAAGGGGGGCTTATCTGATCCGGAAACTAAAAATGGGTGCATGTTGACCCGA
JMSF045M02+ CAGCAACAAAAGGGGGGCTTATCTGATCCGGAAACTAAAAATGGGTGCATGTTGACCCGA
rJMSF045M02- CAGCAACAAAAGGGGGGCTTATCTGATCCGGAAACTAAAAATGGGTGCATGTTGACCCGA
JMFN012H06- CAGCAACAAAAGGGGGGCTTATCTGATCCGGAAACTAAAAATGGGTGCATGTTGACCCGA
JMSF045B01+ CAGCAACAAAAGGGGGGCTTATCTGATCCGGAAACTAAAAATGGGTGCATGTTGACCCGA
JMFN018A07+ CAGCAACAAAAGGGGGGCTTATCTGATCCGGAAACTAAAAATGGGTGCATTTTGACCCGA
JMFN046M23+ CAGCAACAAAAGGGGGGCTTATCTGATCCGGAAACTAAAAATGGGTGCATGTTGACCCGA
rJMSF045B01- CAGCAACAAAAGGGGGGCTTATCTGATCCGGAAACTAAAAATGGGTGCATGTTGACCCGA
____________________________________________________________
consensus CAGCAACAAAAGGGGGGCTTATCTGATCCGGAAACTAAAAATGGGTGCATGTTGACCCGA
. : . : . : . : . : . :
JMFN014B12+ CCCGACCTGATGGAGCAGTTAATCAGTCCTGATTCTTAATCTTCTCGATCCGATTGTTGA
rJMFF005P03- CCCGACCTGATGGAGCAGTTAATCAGTCCTGATTCTTAATCTTCTCGATCCGATTGTTGA
rJMSF006M23- CCCGACCTGATGGAGCAGTTAATCAGTCCTGATTCTTAATCTTCTCGATCCGATTGTTGA
JMSF045M02+ CCCGACCTGATGGAGCAGTTAATCAGTCCTGATTCTTAATCTTCTCGATCCGATTGTTGA
rJMSF045M02- CCCGACCTGATGGAGCAGTTAATCAGTCCTGATTCTTAATCTTCTCGATCCGATTGTTGA
JMFN012H06- CCCGACCTGATGGAGCAGTTAATCAGTCCTGATTCTTAATCTTCTCGATCCGATTGTTGA
JMSF045B01+ CCCGACCTGATGGAGCAGTTAATCAGTCCTGATTCTTAATCTTCTCGATCCGATTGTTGA
JMFN018A07+ CCCGACCTGATGGAGCAGTTAATCAGTCCTGATTCTTAATCTTCTCGATCCGATTGTTGA
JMFN046M23+ CCCGACCTGATGGAGCAGTTAATCAGTCCTGATTCTTAATCTTCTCGATCCGATTGTTGA
rJMSF045B01- CCCGACCTGATGGAGCAGTTAATCAGTCCTGATTCTTAATCTTCTCGATCCGATTGTTGA
____________________________________________________________
consensus CCCGACCTGATGGAGCAGTTAATCAGTCCTGATTCTTAATCTTCTCGATCCGATTGTTGA
. : . : . : . : . : . :
JMFN014B12+ GTTCATCGGTGCGGACGAGGAGATTGGTGACGGAGTATAGTATCCAGTAGAAGAAGAGGG
rJMFF005P03- GTTCATCGGTGCGGACGAGGAGATTGGTGACGGAGTATAGTATCCAGTAGAAGAAGAGGG
rJMSF006M23- GTTCATCGGTGCGGACGAGGAGATTGGTGACGGAGTATAGTATCCAGTAGAAGAAGAGGG
JMSF045M02+ GTTCATCGGTGCGGACGAGGAGATTGGTGACGGAGTATAGTATCCAGTAGAAGAAGAGGG
rJMSF045M02- GTTCATCGGTGCGGACGAGGAGATTGGTGACGGAGTATAGTATCCAGTAGAAGAAGAGGG
JMFN012H06- GTTCATCGGTGCGGACGAGGAGATTGGTGACGGAGTATAGTATCCAGTAGAAGAAGAGGG
JMSF045B01+ GTTCATCGGTGCGGACGAGGAGATTGGTGACGGAGTATAGTATCCAGTAGAAGAAAAGGG
JMSF006M23+ CAGTAGAAGAAGAGGN
JMFN018A07+ GTTCATCGGTGCGGACGAGGAGATTGGTGACGGAGTATAGTATCCAGTAGAAGAAGAGGG
JMFN046M23+ GTTCATCGGTGCGGACGAGGAGATTGGTGACGGAGTATAGTATCCAGTAGAAGAAGAGGG
rJMSF045B01- GTTCATCGGTGCGGACGAGGAGATTGGTGACGGAGTATAGTATCCAGTAGAAGAAAAGGG
____________________________________________________________
consensus GTTCATCGGTGCGGACGAGGAGATTGGTGACGGAGTATAGTATCCAGTAGAAGAAGAGGG
. : . : . : . : . : . :
JMFN014B12+ CGGAGGCGATGAGGAGGGCATTGCGCTCGGACTTGATGATAGACTTGTGGAAGCGGAGGT
rJMFF005P03- CGGAGGCGATGAGGAGGGCATTGCGCTCGGACTTGATGATAGACTTGTGGAAGCGGAGGT
rJMSF006M23- CGGANGCGATGAGGAGGGCATTGCGCTCGGACTTGATGATAGACTTGTGGAANCGGANGT
JMSF045M02+ CGGAGGCGATGAGGAGGGCATTGCGCTCGGACTTGATGATAGACTTGTGGAAGCGGAGGT
rJMSF045M02- CGGAGGCGATGAGGAGGGCATTGCGCTCGGACTTGATGATAGACTTGTGGAAGCGGAGGT
JMFN012H06- CGGAGGCGATGAGGAGGGCATTGCGCTCGGACTTGATGATAGACTTGTGGAAGCGGAGGT
JMSF045B01+ CGGAGGCGATGAGGAGGGCATTGCGCTCGGACTTGATGATAGACTTGTGGAAGCGGAGGT
JMSF006M23+ CGGAGGCGATGAGGAGGGCATTGCGCTCGGACTTGATGATAGACTTGTGGAAGCGGAGGT
JMFN018A07+ CGGAGGCGATGAGGAGGGCATTGCGCTCGGACTTGATGATAGACTTGTGGAAGCGGAGGT
JMFN046M23+ CGGAGGCGATGAGGAGGGCATTGCGCTCGGACTTGATGATAGACTTGTGGAAGCGGAGGT
rJMSF045B01- CGGAGGCGATGAGGAGGGCATTGCGCTCGGACTTGATGATAGACTTGTGGAAGCGGAGGT
____________________________________________________________
consensus CGGAGGCGATGAGGAGGGCATTGCGCTCGGACTTGATGATAGACTTGTGGAAGCGGAGGT
. : . : . : . : . : . :
JMFN014B12+ GCTCGGCGGGAGAGCAGGCTTCGGGGGATTCACAGGTGGGTCGGGTCTCGTACTTGTAGT
rJMFF005P03- GCTCGGCGGGAGAGCAGGCTTCGGGGGATTCACAGGTGGGTCGGGTCTCGTACTTGTAGT
rJMSF006M23- GCTCGGC
JMSF045M02+ GCTCGGCGGGAGAGCAGGCTTCGGGGGATTCACAGGTGGGTCGGGTCTCGTACTTGTAGT
rJMSF045M02- GCTCGGCGGGAGAGCAGGCTTCGGGGGATTCACAGGTGGGTCGGGTCTCGTACTTGTAGT
JMFN012H06- GCTCGGCGGGAGAGCAGGCTTCGGGGGATTCACAGGTGGGTCGGGTCTCGTACTTGTAGT
JMSF045B01+ GCTCGGCGGGAGAGCAGGCTTCGGGGGATTCACAGGTGGGTCGGGTCTCGTACTTGTAGT
JMSF006M23+ GCTCGGCGGGAGAGCAGGCTTCGGGGGATTCACAGGTGGGTCGGGTCTCGTACTTGTAGT
JMFN018A07+ GCTCGGCGGGAGAGCAGGCTTCGGGGGATTCACAGGTGGGTCGGGTCTCGTACTTGTAGT
JMFN046M23+ GCTCGGCGGGAGAGCAGGCTTCGGGGGATTCACAGGTGGGTCGGGTCTCGTACTTGTAGT
rJMSF045B01- GCTCGGCGGGAGAGCAGGCTTCGGGGGATTCACAGGTGGGTCGGGTCTCGTACTTGTAGT
____________________________________________________________
consensus GCTCGGCGGGAGAGCAGGCTTCGGGGGATTCACAGGTGGGTCGGGTCTCGTACTTGTAGT
. : . : . : . : . : . :
JMFN014B12+ AGATGTCCATCATCAGGAACAAGCAGAAGGGGACGACGGATGATAGAGGCTTGAGGAGGC
rJMFF005P03- AGATGTCCATCATCAGGAACAAGCAGAAGGGGACGACGGATGATAGAGGCTTGAGGAGGC
JMSF045M02+ AGATGTCCATCATCAGGAACAAGCAGAAGGGGACGACGGATGATAGAGGCTTGAGGAGGC
rJMSF045M02- AGATGTCCATCATCAGGAACAAGCAGAAGGGGACGACGGATGATAGAGGCTTGAGGAGGC
JMFN012H06- AGATGTCCATCATCAGGAACAAGCAGAAGGGGACGACGGATGATAGAGGCTTGAGGAGGC
JMSF045B01+ AGATGTCCATCATCAGGAACAAGCAGAAGGGGACGACGGATGATAGAGGCTTGAGGAGGC
JMSF006M23+ AGATGTCCATCATCAGGAACAAGCAGAAGGGGACGACGGATGATAGAGGCTTGAGGAGGC
JMFN018A07+ AGATGTCCATCATCAGGAACAAGCAGAAGGGGACGACGGATGATAGAGGCTTGAGGAGGC
JMFN046M23+ AGATGTCCATCATCAGGAACAAGCAGAAGGGGACGACGGATGATAGAGGCTTGAGGAGGC
rJMSF045B01- AGATGTCCATCATCAGGAACAAGCAGAAGGGGACGACGGATGATAGAGGCTTGAGGAGGC
____________________________________________________________
consensus AGATGTCCATCATCAGGAACAAGCAGAAGGGGACGACGGATGATAGAGGCTTGAGGAGGC
. : . : . : . : . : . :
JMFN014B12+ TCTGGGCGACGCTGACGAGGCCCT
rJMFF005P03- TCTGGGCGACGCTGACGAGGCCCTTGC
JMSF045M02+ TCTGGGCGACGCTGACGAGGCCCTTGC
rJMSF045M02- TCTGGGCGACGCTGACGAGGCCCTTGCGGAGCGGGTTAAGACCCGGGAGGGTGAGGAGGA
JMFN012H06- TCTGGGCGACGCTGACGAGGCCCTTGCGGAGCGGGTTAAGACCCGGGAGGGTGAGGAGGA
JMSF045B01+ TCTGGGCGACGCTGACGAGGCCCTTGCGGAGCGGGTTAAGACCCGGGAGGGTGAGGAGGA
JMSF006M23+ TCTGGGCGACGCTGACGAGGCCCTTGCGGAGCGGGTTAAGACCCGGGAGGGTGAGGAGGA
JMFN018A07+ TCTGGGCGACGCTGACGAGGCCCTTGCGGAGCGGGTTAAGACCCGGGAGGGTGAGGAGGA
JMFN046M23+ TCTGGGCGACGCTGACGAGGCCCTTGCGGAGCGGGTTAAGACCCGGGAGGGTGAGGAGGA
rJMSF045B01- TCTGGGCGACGCTGACGAGGCCCTTGCGGAGCGGGTTAAGACCCGGGAGGGTGAGGAGGA
____________________________________________________________
consensus TCTGGGCGACGCTGACGAGGCCCTTGCGGAGCGGGTTAAGACCCGGGAGGGTGAGGAGGA
. : . : . : . : . : . :
rJMSF045M02- GCACCATGATGGCCTCTGCTCCGGCGGTGTAGCCTAGCACAACCCACTCCAACGCCATTT
JMFN012H06- GCACCATGATGGCCTCTGCTCCGGCGGTGTAGCCTAGCACAACCCACTCCAACGCCATTT
JMSF045B01+ GCACCATGATGGCCTCTGCTCCGGCGGTGTAGCCTAGCACAACCCACTCCAACGCCATTT
JMSF006M23+ GCACCATGATGGCCTCTGCTCCGGCGGTGTAGCCTAGCACAACCCACTCCAACGCCATTT
JMFN018A07+ GCACCATGATGGCCTCTGCTCCGGCGGTGTAGCCTAGCACAACCCACTCCAACGCCATTT
JMFN046M23+ GCACCATGATGGCCTCTGCTCCGGCGGTGTAGCCTAGCACAACCCACTCCAACGCCATTT
rJMSF045B01- GCACCATGATGGCCTCTGCTCCGGCGGTGTAGCCTAGCACAACCCACTCCAACGCCATTT
____________________________________________________________
consensus GCACCATGATGGCCTCTGCTCCGGCGGTGTAGCCTAGCACAACCCACTCCAACGCCATTT
. : . : . : . : . : . :
rJMSF045M02- TTGATGGTTAGGTGAA
JMFN012H06- TTGATGGTTA
JMSF045B01+ TTGATGGTTAGGTGAAGAAGGCAAGACGGTCGGAGATTTCTCTGCAAATCTTAGGTGAAG
JMSF006M23+ TTGATGGTTAGGTGAAGAAGGCAAGACGGTCGGAGATTTCTCTGCAAATC
JMFN018A07+ TTGATGGTTAGGTGAAGAAGGCAAGACGGTCGGAGATTTCTCTGCAAATCTTAGGTGAAG
JMFN046M23+ TTGATGGTTAGGTGAAGAAGGCAAGACGGTCGGAGATTTC
rJMSF045B01- TTGATGGTTAGGTGAAGAAGGCAAGACGGTCGGAGATTTCTCTGCAAATCTTAGGTGAAG
____________________________________________________________
consensus TTGATGGTTAGGTGAAGAAGGCAAGACGGTCGGAGATTTCTCTGCAAATCTTAGGTGAAG
. : . : . : . : . : . :
JMSF045B01+ AAGATGGAGGCCAATTCCTCTTATGCAACTACCCAAGTTCGATTTGGACCCTTTTCCCCA
JMFN018A07+ AAGATGGA
rJMSF045B01- AAGATGGAGGCCAATTCCTCTTATGCAACTACCCAAGTTCGATTTGGACCCTTTTCCCCA
____________________________________________________________
consensus AAGATGGAGGCCAATTCCTCTTATGCAACTACCCAAGTTCGATTTGGACCCTTTTCCCCA