Contig 005808:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF042O18+                                                          AACCACATGAAG
                      ____________________________________________________________
consensus                                                             AACCACATGAAG
 
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rJMSF042O18+          GAAGTCGGATGTGATCCTAGCGCTCTCCACTTTACAACTCTGATTGATGGGCTCAGTCGA
rJMSF045A12+                                                                 GTCGA
                      ____________________________________________________________
consensus             GAAGTCGGATGTGATCCTAGCGCTCTCCACTTTACAACTCTGATTGATGGGCTCAGTCGA
 
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rJMSF042O18+          GCTGGCAACTTGGATGCATG-CAAATACTTTTTCGACGAGATGATAAAGCAAGGCTGCTT
rJMSF045A12+          GCTGGCAACTNGGATGCATGCCAAATACTTTTTCGACGAGATGATAAAGCAAGGCTGCTT
                      ____________________________________________________________
consensus             GCTGGCAACTTGGATGCATGCCAAATACTTTTTCGACGAGATGATAAAGCAAGGCTGCTT
 
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rJMSF042O18+          TCCCGATGTTGTCTGTTACACCGTGATGATAACGGGTTATGTTGTGGCTGGGAATTTCGA
rJMSF045A12+          TCCCGATGTTGTCTGTTACACCGTGATGATAACGGGTTATGTTGTGGCTGGGAATTTCGA
                      ____________________________________________________________
consensus             TCCCGATGTTGTCTGTTACACCGTGATGATAACGGGTTATGTTGTGGCTGGGAATTTCGA
 
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rJMSF042O18+          TAAAGCTGAAGAGCTTTTTGCCGAGATGATAAGCAAGGGGCAGCTACCAAATGCGTTTAC
rJMSF045A12+          TAAAGCTGAAGAGCTTTTTGCCGAGATGATAAGCAAGGGGCAGCTACCAAATGCGTTTAC
                      ____________________________________________________________
consensus             TAAAGCTGAAGAGCTTTTTGCCGAGATGATAAGCAAGGGGCAGCTACCAAATGCGTTTAC
 
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rJMSF042O18+          CTACAACTCCATGATTCGCGGGCTTTGCATGACAGGGAAATTCAAGGATGCTTGCCTTAT
rJMSF045A12+          CTACAACTCCATGATTCGCGGGCTTTGCATGACAGGGAAATTCAAGGATGCTTGCCTTAT
                      ____________________________________________________________
consensus             CTACAACTCCATGATTCGCGGGCTTTGCATGACAGGGAAATTCAAGGATGCTTGCCTTAT
 
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rJMSF042O18+          GTTGAAAGAAATGGAGTCGAGGGGATGTAATCCGAATTTTCATGTGTATAGTACTCTAGT
rJMSF045A12+          GTTGAAAGAAATGGAGTCGAGGGGATGTAATCCGAATTTTCATGTGTATAGTACTCTAGT
                      ____________________________________________________________
consensus             GTTGAAAGAAATGGAGTCGAGGGGATGTAATCCGAATTTTCATGTGTATAGTACTCTAGT
 
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rJMSF042O18+          GAGTTGCTTGCGGAATGCTGGAAAGCTTTCAGAAGCCCATCAAGTAATAAGACAGATGGT
rJMSF045A12+          GAGTTGCTTGCGGAATGCTGGAAAGCTTTCAGAAGCCCATCAAGTAATAAGACAGATGGT
                      ____________________________________________________________
consensus             GAGTTGCTTGCGGAATGCTGGAAAGCTTTCAGAAGCCCATCAAGTAATAAGACAGATGGT
 
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rJMSF042O18+          GGATAAGGGGCGCTATATCCATCTTGTATCAAAGATAAAAAGATGTAGAAGACGATGATA
rJMSF045A12+          GGATAAGGGGCGCTATATCCATCTTGTATCAAAGATAAAAAGATGTAGAAGACGATGATA
                      ____________________________________________________________
consensus             GGATAAGGGGCGCTATATCCATCTTGTATCAAAGATAAAAAGATGTAGAAGACGATGATA
 
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rJMSF042O18+          AATTTTTCTCTTTAGCGTTAGGTGATTCAGTTGT-ATATTTAGTTGAAGAATTGCAGATC
rJMSF045A12+          AATTTTTCTCTTTAGCGTTAGGTGATTCAGTTGTAACATTTAGTTGAAGAATTGCAGATC
                      ____________________________________________________________
consensus             AATTTTTCTCTTTAGCGTTAGGTGATTCAGTTGTAATATTTAGTTGAAGAATTGCAGATC
 
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rJMSF042O18+          AATCCGGCATATTTGATACATTCACCAGCT                              
rJMSF045A12+          AATCCGGCATATTTGATACATTCACCAGCTGCTATAGGGCAGTGTATGCTCAATGACACA
                      ____________________________________________________________
consensus             AATCCGGCATATTTGATACATTCACCAGCTGCTATAGGGCAGTGTATGCTCAATGACACA
 
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rJMSF045A12+          CAATTTTGATCATGCTCTCTAATAATTTCTATAATTTGTGAATTTTTCGTCGATGTGGCA
                      ____________________________________________________________
consensus             CAATTTTGATCATGCTCTCTAATAATTTCTATAATTTGTGAATTTTTCGTCGATGTGGCA
 
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rJMSF045A12+          AACCTGATAGATGTGCTAGACAAATATAAAGAAATGCAATGCTTCATCTGAGCAGATACA
                      ____________________________________________________________
consensus             AACCTGATAGATGTGCTAGACAAATATAAAGAAATGCAATGCTTCATCTGAGCAGATACA