Contig 005807:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037I09Sequence557005269 (2)ref|XP_004245671.1|1e-69PREDICTED: uncharacterized protein LOC101252512 isoform X1 [Solanum lycopersicu780005807 (2)
JMSF044O15Sequence747005269 (2)ref|XP_009757889.1|254PREDICTED: uncharacterized protein LOC104210636 [Nicotiana sylvestris]611005807 (2)

Alignment

This contig is upended


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rJMFF037I09+                                                        TTGCGAGATGGAGA
                      ____________________________________________________________
consensus                                                           TTGCGAGATGGAGA
 
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rJMFF037I09+          AGATAATATGTTAAACTTTTTTAGTACGGGTATTGATTCTTTTCGGGGAAGATCGGGTCC
                      ____________________________________________________________
consensus             AGATAATATGTTAAACTTTTTTAGTACGGGTATTGATTCTTTTCGGGGAAGATCGGGTCC
 
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rJMFF037I09+          TCATCAGGCTTTACATGAGAAAACAAATTGTGATGATATTGAGGACGATGACTTGGAAGT
                      ____________________________________________________________
consensus             TCATCAGGCTTTACATGAGAAAACAAATTGTGATGATATTGAGGACGATGACTTGGAAGT
 
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rJMFF037I09+          ATCATCCATAGCTAGTGTGAGCTCTATATTAGACCGGGCCCTTAATTTGGAATTTGATGA
rJMSF044O15+                                                           GAATTTGATGA
                      ____________________________________________________________
consensus             ATCATCCATAGCTAGTGTGAGCTCTATATTAGACCGGGCCCTTAATTTGGAATTTGATGA
 
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rJMFF037I09+          CATAGATCAGAGTTGTGTTGTACCTGCTGCTGCTGTAAATTCTTTTGAGATTAATGATCA
rJMSF044O15+          CATAGATCAGAGTTGTGTTGTACCTGCTGCTGCTGTAAATTCTTTTGAGATTAATGATCA
                      ____________________________________________________________
consensus             CATAGATCAGAGTTGTGTTGTACCTGCTGCTGCTGTAAATTCTTTTGAGATTAATGATCA
 
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rJMFF037I09+          AGTCATCTTGGCTATGGAAGACGACGACGACAAGTGTTCCAGCTCCGCTCTAAATGGCTC
rJMSF044O15+          AGTCATCTTGGCTATGGAAGACGACGACGACAAGTGTTCCAGCTCCGCTCTAAATGGCTC
                      ____________________________________________________________
consensus             AGTCATCTTGGCTATGGAAGACGACGACGACAAGTGTTCCAGCTCCGCTCTAAATGGCTC
 
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rJMFF037I09+          AAATGATGCAAACATCCTTCAGTCCCCTGAGGTTCCTAATGAGTGTGACACAATTCCAAA
rJMSF044O15+          AAATGATGCAAACATCCTTCAGTCCCCTGAGGTTCCTAATGAGTGTGACACAATTCCAAA
                      ____________________________________________________________
consensus             AAATGATGCAAACATCCTTCAGTCCCCTGAGGTTCCTAATGAGTGTGACACAATTCCAAA
 
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rJMFF037I09+          GGATATGGAGGGAAATCTTGTGGCACAAAATGCTGCCAACACGAAAGATGGTAAATGGCT
rJMSF044O15+          GGATATGGAGGGAAATCTTGTGGCACAAAATGCTTCCAACACGAAAGATGGTAAATGGCT
                      ____________________________________________________________
consensus             GGATATGGAGGGAAATCTTGTGGCACAAAATGCTTCCAACACGAAAGATGGTAAATGGCT
 
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rJMFF037I09+          CTCCCCCAAGGAGCCATTACTGCTAAAAACAGTCCAAACCGTTGCAAGTGGCACTGCTAT
rJMSF044O15+          CTCCCCCAAGGAGCCATTACTGCTAAAAACAGTCCAAACCGTTGCAAGTGGCACTGCTAT
                      ____________________________________________________________
consensus             CTCCCCCAAGGAGCCATTACTGCTAAAAACAGTCCAAACCGTTGCAAGTGGCACTGCTAT
 
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rJMFF037I09+          CGCCGGCCTGTTATTTCTGCTGCTTCGTCTTAGAGAGGGGAAAAAGCGGTGATGCAAACA
rJMSF044O15+          CGCCGGCCTGTTATTTCTGCTGCTTCGTCTTAGAGAGGGGAAAAAGCGGTGATGCAAACA
                      ____________________________________________________________
consensus             CGCCGGCCTGTTATTTCTGCTGCTTCGTCTTAGAGAGGGGAAAAAGCGGTGATGCAAACA
 
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rJMFF037I09+          GGAAACTGGTTCAGAACAAGAAGTTTATCCCTAATAGGGAGGGACAATCTGGAGCTACAG
rJMSF044O15+          GGAAACTGGTTCAGAACAAGAAGTTTATCCCTAATAGGGAGGGACAATCTGGAGCTACAG
                      ____________________________________________________________
consensus             GGAAACTGGTTCAGAACAAGAAGTTTATCCCTAATAGGGAGGGACAATCTGGAGCTACAG
 
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rJMFF037I09+          CTAGGATTTATCCTGCAGAAAAGCTAAAATTCAAGAATTATTAGTACTGTATTCTTTTTA
rJMSF044O15+          CTAGGATTTATCCTGCAGAAAAGCTAAAATTCAAGAATTATTAGTACTGTATTCTTTTTA
                      ____________________________________________________________
consensus             CTAGGATTTATCCTGCAGAAAAGCTAAAATTCAAGAATTATTAGTACTGTATTCTTTTTA
 
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rJMFF037I09+          CTAGTTACTTGGCTAGCTAGGATAGTTTCGTCCAAAATCTTACAGCTTAGTAGCATGTCT
rJMSF044O15+          CTAGTTACTTGGCTAGCTAGGATAGTTTCGTCCAAAATCTTACAGCTTAGTAGCATGTCT
                      ____________________________________________________________
consensus             CTAGTTACTTGGCTAGCTAGGATAGTTTCGTCCAAAATCTTACAGCTTAGTAGCATGTCT
 
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rJMFF037I09+          CTAACTCTAAATAAGATCTCCTTCCCCCCAACCTCATTTTATAAC               
rJMSF044O15+          CTAACTCTAAATAAGATCTCCTTCCCCCCAACCTCATTTTATAACCATGTCTTATTACTG
                      ____________________________________________________________
consensus             CTAACTCTAAATAAGATCTCCTTCCCCCCAACCTCATTTTATAACCATGTCTTATTACTG