| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF003P10 | Sequence | 273 | 013218 (5) | gb|AAG24863.1| | 2e-38 | CONSTANS-like protein [Ipomoea nil] | 729 | 005806 (5) | gb|AAG24863.1| | 3e-67 | CONSTANS-like protein [Ipomoea nil] |
| JMSF006B10 | Sequence | 237 | 003713 (11) | gb|KCW57201.1| | 1e-23 | hypothetical protein EUGRSUZ_H00016 [Eucalyptus grandis] | 314 | 005806 (5) | gb|AAG24863.1| | 2e-40 | CONSTANS-like protein [Ipomoea nil] |
| JMSF018C16 | Sequence | 429 | 013218 (5) | gb|AAG24863.1| | 7e-69 | CONSTANS-like protein [Ipomoea nil] | 773 | 005806 (5) | gb|AAG24863.1| | 4e-67 | CONSTANS-like protein [Ipomoea nil] |
| JMSF044M14 | Sequence | 771 | 013218 (5) | gb|AAG24863.1| | 1e-106 | CONSTANS-like protein [Ipomoea nil] | 777 | 005806 (5) | gb|AAG24863.1| | 5e-67 | CONSTANS-like protein [Ipomoea nil] |
| JMSF046I10 | Sequence | 733 | 005806 (5) | gb|AAG24863.1| | 2e-66 | CONSTANS-like protein [Ipomoea nil] | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF018C16+ AATTTCAACTGCAAGGAATG
____________________________________________________________
consensus AATTTCAACTGCAAGGAATG
. : . : . : . : . : . :
rJMSF003P10+ TCCAGCATCCATCAGTCACACAGTAAGT
rJMSF046I10+ TCCAGCATCCATCAGTCACACAGTAAGT
rJMSF018C16+ GAATATGAGAATTTTAACACGGGATATGGTTATCCAGCATCCATCAGTCACACAGTAAGT
rJMSF044M14+ TTTAACACGGGATATGGTTATCCAGCATCCATCAGTCACACAGTAAGT
____________________________________________________________
consensus GAATATGAGAATTTTAACACGGGATATGGTTATCCAGCATCCATCAGTCACACAGTAAGT
. : . : . : . : . : . :
rJMSF003P10+ TTTCTTCATCATATCCAATTGTCTCACTTCAGGTAAGACAATTTTA--TTTTTTTATTTT
rJMSF046I10+ TTTCTTCATCATATNCAATTGTCTCACTTCAGGTAAGACAATTTTATTTTTTTTATTTTT
rJMSF018C16+ TTTCTTCATCATATCCAATTGTCTCACTTCAGGTAAGACAATTTTA-TTTTTTTATTTTT
rJMSF044M14+ TTTNTTCATCATATCCAATTGTCTCACTTCAGGTAAGACAATTTTA-TTTTTTTATTTTT
____________________________________________________________
consensus TTTCTTCATCATATCCAATTGTCTCACTTCAGGTAAGACAATTTTA-TTTTTTTATTTTT
. : . : . : . : . : . :
rJMSF003P10+ TCATGAGGAATTTAAGATATCAATATTCCAATAAAACCCAACGTCAAGATATTTCTAGGA
rJMSF046I10+ TCATGAGGAATTTAAGATATCAATATTCCAATAAAACCCAACGTCAAGATATTTCTAGGA
rJMSF018C16+ TCATGAGGAATTTAAGATATCAATATTCCAATAAAACCCAACGTCAAGATATTTCTAGGA
rJMSF044M14+ TCATGAGGAATTTAAGATATCAATATTCCAATAAAACCCAACGTCAAGATATTTCTAGGA
____________________________________________________________
consensus TCATGAGGAATTTAAGATATCAATATTCCAATAAAACCCAACGTCAAGATATTTCTAGGA
. : . : . : . : . : . :
rJMSF003P10+ GATCATTTTAGTCATTCACTTGCTAGTCCTGTTTCTCCTTCGGGAATCAAGGTATGCAAC
rJMSF046I10+ GATCATNTTAGTCATTCACTTGCTAGTCCTGTTTCTCCTTCGGGAATCAAGGTATGCAAC
rJMSF018C16+ GATCATTTTAGTCATTCACTTGCTAGTCCTGTTTCTCCTTCGGAAATCAAGGTATGCAAC
rJMSF044M14+ GATCATTTTAGTCATTCACTTGCTAGTCCTGTTTCTCCTTCGG-AATCAAGGTATGCAAC
____________________________________________________________
consensus GATCATTTTAGTCATTCACTTGCTAGTCCTGTTTCTCCTTCGGGAATCAAGGTATGCAAC
. : . : . : . : . : . :
rJMSF003P10+ TTCCCCTAAAGACTAATTATGATGCTCAAATCTCAAGGAAACGAAGCACCTAACTGGTAT
rJMSF046I10+ TTCCCCTAAAGACTAATTATGATGCTCAAATCTCAAGGAAACGAAGCACCTAACTGGTAT
rJMSF018C16+ TTCCCCTAAAGACTAATTATGATGCTCAAATCTCAAGGAAACGAAGCACCTAACTGGTAT
rJMSF044M14+ TTCCCCTAAAGACTAATTATGATGCTCAAATCTCAAGGAAACGAAGCACCTAACTGGTAT
____________________________________________________________
consensus TTCCCCTAAAGACTAATTATGATGCTCAAATCTCAAGGAAACGAAGCACCTAACTGGTAT
. : . : . : . : . : . :
rJMSF003P10+ ATTGTGATTTTGGGTTACCAGGTCTCCATTTCTTCCATGGATGTTGGTGTTGTTCCAGAG
rJMSF046I10+ ATTGTGATTTTGGGTTACCAGGTCTCCATTTCTTCCATGGATGTTGGTGTTGTTCCAGAG
rJMSF018C16+ ATTGTGATTTTGGGTTACCAGGTCTCCATTTCTTCCATGGATGTTGGTGTTGTTCCAGAG
rJMSF044M14+ ATTGTGATTTTGGGTTACCAGGTCTCCATTTCTTCCATGGATGTTGGTGTTGTTCCAGAG
____________________________________________________________
consensus ATTGTGATTTTGGGTTACCAGGTCTCCATTTCTTCCATGGATGTTGGTGTTGTTCCAGAG
. : . : . : . : . : . :
rJMSF003P10+ TCTACCTTGAGTGATACCTCAATCTCCCACTCAAGAGCCTCGAAAGGAACAATTGACCTC
rJMSF046I10+ TCTACCTTGAGTGATACCTCAATCTCCCACTCAAGAGCCTCGAAAGGAACAATTGACCTC
rJMSF018C16+ TCTACCTTGAGTGATACCTCAATCTCCCACTCAAGAGCCTCGAAAGGAACAATTGACCTC
rJMSF044M14+ TCTACCTTGAGTGATACCTCAATCTCCCACTCAAGAGCCTCGAAAGGAACAATTGACCTC
____________________________________________________________
consensus TCTACCTTGAGTGATACCTCAATCTCCCACTCAAGAGCCTCGAAAGGAACAATTGACCTC
. : . : . : . : . : . :
rJMSF003P10+ TTCTCAGGTCCTCCAATTCAGATGCCTCCACAGCTTCAGCTTAGTCAAATGGACAGGGAG
rJMSF006B10+ AGATGCCTCCACAGCTTCAGCTTAGTCAAATGGACAGGGAG
rJMSF046I10+ TTCTCAGGTCCTCCAACTCAGATGCCTCCACAGCTTCAGCTTAGTCAAATGGACAGGGAG
rJMSF018C16+ TTCTCAGGTCCTCCAATTCAGATGCCTCCACAGCTTCAGCTTAGTCAAATGGACAGGGAG
rJMSF044M14+ TTCTCAGGTCCTCCAATTCAGATGCCTCCACAGCTTCAGCTTAGTCAAATGGACAGGGAG
____________________________________________________________
consensus TTCTCAGGTCCTCCAATTCAGATGCCTCCACAGCTTCAGCTTAGTCAAATGGACAGGGAG
. : . : . : . : . : . :
rJMSF003P10+ GCCAGAGTTCTCAGGTACAGGGAGAAGAAGAAGACCCGCAAGTTTGAGAAGACCATCCGG
rJMSF006B10+ GCCAGAGTTNTCAGGTACAGGGAGAAGAAGANGNCCCGCANGTTTGAGAAGCCCNTCCGG
rJMSF046I10+ GCCAGAGTTCTCAGGTACAGGGAGAAGAAGAAGACCCGCAAGTTTGAGAAGACCATCCGG
rJMSF018C16+ GCCAGAGTTCTCAGGTACAGGGAGAAGAAGAAGACCCGCAAGTTTGAGAAGACCATCCGG
rJMSF044M14+ GCCAGAGTTCTCAGGTACAGGGAGAAGAAGAAGACCCGCAAGTTTGAGAAGACCATCCGG
____________________________________________________________
consensus GCCAGAGTTCTCAGGTACAGGGAGAAGAAGAAGACCCGCAAGTTTGAGAAGACCATCCGG
. : . : . : . : . : . :
rJMSF003P10+ TACGCCTCAAGAAAGGCCTATGCAGAAACCAGGCCAAGAATAAAAGGTCGATTTGCAAAG
rJMSF006B10+ TACGCCTCAAGAAAGGCCTNTGCAGAAACCAGGCCAAGAATAAAAGGTCGNTTTGCAANG
rJMSF046I10+ TACGCCTCAAGAAAGGCCTATGCAGAAACCAGGCCAAGAATAAAAGGTCGATTTGCAAAG
rJMSF018C16+ TACGCCTCAAGAAAGGCCTATGCAGAAACCAGGCCAAGAATAAAAGGTCGATTTGCAAAG
rJMSF044M14+ TACGCCTCAAGAAAGGCCTATGCAGAAACCAGGCCAAGAATAAAAGGTCGATTTGCAAAG
____________________________________________________________
consensus TACGCCTCAAGAAAGGCCTATGCAGAAACCAGGCCAAGAATAAAAGGTCGATTTGCAAAG
. : . : . : . : . : . :
rJMSF003P10+ AGAACAGATGTAGATACCGAGGTTGATCAGATCTTCTATGCACCATTGATGGCAGAAAGT
rJMSF006B10+ AGAACAGATGTAGATNCCGAGGTTGATCAGATCTTCTATGCACCATTGATGGCAGAAAGT
rJMSF046I10+ AGAACAGATGTAGATACCGAGGTTGATCAGATCTTCTATGCACCATTGATGGCAGAAAGT
rJMSF018C16+ AGAACAGATGTAGATACCGAGGTTGATCAGATCTTCTATGCACCATTGATGGCAGAAAGT
rJMSF044M14+ AGAACAGATGTAGATACCGAGGTTGATCAGATCTTCTATGCACCATTGATGGCAGAAAGT
____________________________________________________________
consensus AGAACAGATGTAGATACCGAGGTTGATCAGATCTTCTATGCACCATTGATGGCAGAAAGT
. : . : . : . : . : . :
rJMSF003P10+ GGATACGGAATTGTTCCATCATTCTGAATCCAAAAACAGAGACAATCTTTAGAGCTACTT
rJMSF006B10+ GGATACGGAATTCTTCCATCATTCTGAATCCAAAANCAGAGACAATCTTTAGAGCTACTT
rJMSF046I10+ GGATACGGAATTGTTCCATCATTCTGAATCCAAAAACAGAGACAATCTTTAGAGCTACTT
rJMSF018C16+ GGATACGGAATTGTTCCATCATTCTGAATCCAAAAACAGAGACAATCTTTAGAGCTACTT
rJMSF044M14+ GGATACGGAATTGTTCCATCATTCTGAATCCAAAAACAGAGACAATCTTTAGAGCTACTT
____________________________________________________________
consensus GGATACGGAATTGTTCCATCATTCTGAATCCAAAAACAGAGACAATCTTTAGAGCTACTT
. : . : . : . : . : . :
rJMSF003P10+ CAATTAGTGTATTCTTAGAGTTACTTCAATTAG
rJMSF006B10+ CAATTAGTGTANTCTTAGAGTTACTTCAATTAG
rJMSF046I10+ CAATTAGTGTATTCTTAGAGTTACTTCAATTAG
rJMSF018C16+ CAATTAGTGTATTCTTAGAGTTACTTCAATTAG
rJMSF044M14+ CAATTAGTGTATTCTTAGAGTTACTTCAATTAGTGTATTCTTAAGCATAACCAGGTGTTC
____________________________________________________________
consensus CAATTAGTGTATTCTTAGAGTTACTTCAATTAGTGTATTCTTAAGCATAACCAGGTGTTC