Contig 005805:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013E18Sequence441005267 (2)ref|XP_006338669.1|6e-09PREDICTED: F-box protein SKIP14-like [Solanum tuberosum]743005805 (2)
JMSF044L10Sequence809005267 (2)ref|XP_009781070.1|3e-22PREDICTED: F-box protein SKIP14-like [Nicotiana sylvestris]746005805 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF013E18+ CNATTGTCAATTTTGATGCTTNTTCTGGTCANGGAAACTGGATGAATGGAG
                      ____________________________________________________________
consensus CNATTGTCAATTTTGATGCTTNTTCTGGTCANGGAAACTGGATGAATGGAG
 
. : . : . : . : . : . :
rJMSF013E18+ GCTGCATAGATCTGGCTATACAATGTTCTATGGACTATGGGGANCTTTAAACTTTTAGGA
rJMSF044L10+ CTATGGGGAACTTTAAACTTTTAGGA
                      ____________________________________________________________
consensus GCTGCATAGATCTGGCTATACAATGTTCTATGGACTATGGGGAACTTTAAACTTTTAGGA
 
. : . : . : . : . : . :
rJMSF013E18+ CGGGCTAGATTGAAGCCANTGGATTTTGCCTATTATGGGCGCTTGAGAGCATAGAGCTGG
rJMSF044L10+ CGGGCTAGATNGAAGCCANTGGATTTTGCCTATTATGGGCGCTTGAGAGCATAGAGCTGG
                      ____________________________________________________________
consensus CGGGCTAGATTGAAGCCANTGGATTTTGCCTATTATGGGCGCTTGAGAGCATAGAGCTGG
 
. : . : . : . : . : . :
rJMSF013E18+ AGGGAAAGAAATAAAAGAAAAGCTATTCTGATTGCCAGCTGCATTTTGATAAACTTATCT
rJMSF044L10+ AGGGAAAGAAATAAAAGAAAAGCTATTCTGATTGCCAGCTGCATTTTGATAAACTTATCT
                      ____________________________________________________________
consensus AGGGAAAGAAATAAAAGAAAAGCTATTCTGATTGCCAGCTGCATTTTGATAAACTTATCT
 
. : . : . : . : . : . :
rJMSF013E18+ TAAAGAGGGGAGCAAACGCGTGCATTACAAGTAGTGAACTGCTGAAAAACTAGCTCGATG
rJMSF044L10+ TAAAGAGGGGAGCAAACGCGTGCATTACAAGTAGTGAACTGCTGAAAAACTAGCTCGATG
                      ____________________________________________________________
consensus TAAAGAGGGGAGCAAACGCGTGCATTACAAGTAGTGAACTGCTGAAAAACTAGCTCGATG
 
. : . : . : . : . : . :
rJMSF013E18+ GGTTTCACGAAGATGGGACAGGAATTGCGTTTAGACTTGCATCCTACACCACTGCTAGAG
rJMSF044L10+ GGTTTCACGAAGATGGGACAGGAATTGCGTTTAGACTTGCATCCTACACCACTGCTAGAG
                      ____________________________________________________________
consensus GGTTTCACGAAGATGGGACAGGAATTGCGTTTAGACTTGCATCCTACACCACTGCTAGAG
 
. : . : . : . : . : . :
rJMSF013E18+ CATGATTAGACAAATAGTTGGCAGGTTTGTGAAAGCCAAGCATCCTTTTCTGTTATAAAC
rJMSF044L10+ CATGATTAGACAAATAGTTGGCAGGTTTGTGAAAGCCAAGCATCCTTTTCTGTTATAAAC
                      ____________________________________________________________
consensus CATGATTAGACAAATAGTTGGCAGGTTTGTGAAAGCCAAGCATCCTTTTCTGTTATAAAC
 
. : . : . : . : . : . :
rJMSF013E18+ TCCGAGAGAGAGAGAGAGAGAGAGAGAGACACATATAGCTGAGCTGTGATTGTGGTCGAC
rJMSF044L10+ TCCGAGAGAGAGAGAGAGAGAGAGAGAGACACATATAGCTGAGCTGTGATTGTGGTCGAC
                      ____________________________________________________________
consensus TCCGAGAGAGAGAGAGAGAGAGAGAGAGACACATATAGCTGAGCTGTGATTGTGGTCGAC
 
. : . : . : . : . : . :
rJMSF013E18+ GGAGAAGCTAAACATCATCGTCAGACAAGCTGGATTCTCACACACAGTGGTGACACAGGG
rJMSF044L10+ GGAGAAGCTAAACATCATCGTCAGACAAGCTGGATTCTCACACACAGTGGTGACACAGGG
                      ____________________________________________________________
consensus GGAGAAGCTAAACATCATCGTCAGACAAGCTGGATTCTCACACACAGTGGTGACACAGGG
 
. : . : . : . : . : . :
rJMSF013E18+ ATCACAATTGGAAGCTTGGAGTTGGCTCATGTGTTTAACTAAAAATGTTTTGTAATTGTA
rJMSF044L10+ ATCACAATTGGAAGCTTGGAGTTGGCTCATGTGTTTAACTAAAAATGTTTTGTAATTGTA
                      ____________________________________________________________
consensus ATCACAATTGGAAGCTTGGAGTTGGCTCATGTGTTTAACTAAAAATGTTTTGTAATTGTA
 
. : . : . : . : . : . :
rJMSF013E18+ TGTTCAATACTCAAACTCTGCTAGTGGCTATCCTCTGAATGTGTTGTCTGCCAGTTACCA
rJMSF044L10+ TGTTCAATACTCAAACTCTGCTAGTGGCTATCCTCTGAATGTGTTGTCTGCCAGTTACCA
                      ____________________________________________________________
consensus TGTTCAATACTCAAACTCTGCTAGTGGCTATCCTCTGAATGTGTTGTCTGCCAGTTACCA
 
. : . : . : . : . : . :
rJMSF013E18+ TCTGTTTGTGGTACTACTTACTACTACTAGGCATGGATTTCTTGTGACAATAACTTATGG
rJMSF044L10+ TCTGTTTGTGGTACTACTTACTACTACTAGGCATGGATTTCTTGTGACAATAACTTATGG
                      ____________________________________________________________
consensus TCTGTTTGTGGTACTACTTACTACTACTAGGCATGGATTTCTTGTGACAATAACTTATGG
 
. : . : . : . : . : . :
rJMSF013E18+ TTGTGGTAGTTATACAGTCCCAACTCATT
rJMSF044L10+ TTGTGGTAGTTATACAGTCCCAACTCATTTCCTTTGACTCTGCTTTTTCAATTCACAAAT
                      ____________________________________________________________
consensus TTGTGGTAGTTATACAGTCCCAACTCATTTCCTTTGACTCTGCTTTTTCAATTCACAAAT
 
. : . : . : . : . : . :
rJMSF044L10+ GTATTTCATCTTTTATCTGCAATGTTATTGACTTATTGGTATATAAAAGTAGCAAAGCCG
                      ____________________________________________________________
consensus GTATTTCATCTTTTATCTGCAATGTTATTGACTTATTGGTATATAAAAGTAGCAAAGCCG