Contig 005805:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF013E18+                   CNATTGTCAATTTTGATGCTTNTTCTGGTCANGGAAACTGGATGAATGGAG
                      ____________________________________________________________
consensus                      CNATTGTCAATTTTGATGCTTNTTCTGGTCANGGAAACTGGATGAATGGAG
 
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rJMSF013E18+          GCTGCATAGATCTGGCTATACAATGTTCTATGGACTATGGGGANCTTTAAACTTTTAGGA
rJMSF044L10+                                            CTATGGGGAACTTTAAACTTTTAGGA
                      ____________________________________________________________
consensus             GCTGCATAGATCTGGCTATACAATGTTCTATGGACTATGGGGAACTTTAAACTTTTAGGA
 
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rJMSF013E18+          CGGGCTAGATTGAAGCCANTGGATTTTGCCTATTATGGGCGCTTGAGAGCATAGAGCTGG
rJMSF044L10+          CGGGCTAGATNGAAGCCANTGGATTTTGCCTATTATGGGCGCTTGAGAGCATAGAGCTGG
                      ____________________________________________________________
consensus             CGGGCTAGATTGAAGCCANTGGATTTTGCCTATTATGGGCGCTTGAGAGCATAGAGCTGG
 
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rJMSF013E18+          AGGGAAAGAAATAAAAGAAAAGCTATTCTGATTGCCAGCTGCATTTTGATAAACTTATCT
rJMSF044L10+          AGGGAAAGAAATAAAAGAAAAGCTATTCTGATTGCCAGCTGCATTTTGATAAACTTATCT
                      ____________________________________________________________
consensus             AGGGAAAGAAATAAAAGAAAAGCTATTCTGATTGCCAGCTGCATTTTGATAAACTTATCT
 
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rJMSF013E18+          TAAAGAGGGGAGCAAACGCGTGCATTACAAGTAGTGAACTGCTGAAAAACTAGCTCGATG
rJMSF044L10+          TAAAGAGGGGAGCAAACGCGTGCATTACAAGTAGTGAACTGCTGAAAAACTAGCTCGATG
                      ____________________________________________________________
consensus             TAAAGAGGGGAGCAAACGCGTGCATTACAAGTAGTGAACTGCTGAAAAACTAGCTCGATG
 
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rJMSF013E18+          GGTTTCACGAAGATGGGACAGGAATTGCGTTTAGACTTGCATCCTACACCACTGCTAGAG
rJMSF044L10+          GGTTTCACGAAGATGGGACAGGAATTGCGTTTAGACTTGCATCCTACACCACTGCTAGAG
                      ____________________________________________________________
consensus             GGTTTCACGAAGATGGGACAGGAATTGCGTTTAGACTTGCATCCTACACCACTGCTAGAG
 
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rJMSF013E18+          CATGATTAGACAAATAGTTGGCAGGTTTGTGAAAGCCAAGCATCCTTTTCTGTTATAAAC
rJMSF044L10+          CATGATTAGACAAATAGTTGGCAGGTTTGTGAAAGCCAAGCATCCTTTTCTGTTATAAAC
                      ____________________________________________________________
consensus             CATGATTAGACAAATAGTTGGCAGGTTTGTGAAAGCCAAGCATCCTTTTCTGTTATAAAC
 
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rJMSF013E18+          TCCGAGAGAGAGAGAGAGAGAGAGAGAGACACATATAGCTGAGCTGTGATTGTGGTCGAC
rJMSF044L10+          TCCGAGAGAGAGAGAGAGAGAGAGAGAGACACATATAGCTGAGCTGTGATTGTGGTCGAC
                      ____________________________________________________________
consensus             TCCGAGAGAGAGAGAGAGAGAGAGAGAGACACATATAGCTGAGCTGTGATTGTGGTCGAC
 
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rJMSF013E18+          GGAGAAGCTAAACATCATCGTCAGACAAGCTGGATTCTCACACACAGTGGTGACACAGGG
rJMSF044L10+          GGAGAAGCTAAACATCATCGTCAGACAAGCTGGATTCTCACACACAGTGGTGACACAGGG
                      ____________________________________________________________
consensus             GGAGAAGCTAAACATCATCGTCAGACAAGCTGGATTCTCACACACAGTGGTGACACAGGG
 
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rJMSF013E18+          ATCACAATTGGAAGCTTGGAGTTGGCTCATGTGTTTAACTAAAAATGTTTTGTAATTGTA
rJMSF044L10+          ATCACAATTGGAAGCTTGGAGTTGGCTCATGTGTTTAACTAAAAATGTTTTGTAATTGTA
                      ____________________________________________________________
consensus             ATCACAATTGGAAGCTTGGAGTTGGCTCATGTGTTTAACTAAAAATGTTTTGTAATTGTA
 
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rJMSF013E18+          TGTTCAATACTCAAACTCTGCTAGTGGCTATCCTCTGAATGTGTTGTCTGCCAGTTACCA
rJMSF044L10+          TGTTCAATACTCAAACTCTGCTAGTGGCTATCCTCTGAATGTGTTGTCTGCCAGTTACCA
                      ____________________________________________________________
consensus             TGTTCAATACTCAAACTCTGCTAGTGGCTATCCTCTGAATGTGTTGTCTGCCAGTTACCA
 
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rJMSF013E18+          TCTGTTTGTGGTACTACTTACTACTACTAGGCATGGATTTCTTGTGACAATAACTTATGG
rJMSF044L10+          TCTGTTTGTGGTACTACTTACTACTACTAGGCATGGATTTCTTGTGACAATAACTTATGG
                      ____________________________________________________________
consensus             TCTGTTTGTGGTACTACTTACTACTACTAGGCATGGATTTCTTGTGACAATAACTTATGG
 
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rJMSF013E18+          TTGTGGTAGTTATACAGTCCCAACTCATT                               
rJMSF044L10+          TTGTGGTAGTTATACAGTCCCAACTCATTTCCTTTGACTCTGCTTTTTCAATTCACAAAT
                      ____________________________________________________________
consensus             TTGTGGTAGTTATACAGTCCCAACTCATTTCCTTTGACTCTGCTTTTTCAATTCACAAAT
 
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rJMSF044L10+          GTATTTCATCTTTTATCTGCAATGTTATTGACTTATTGGTATATAAAAGTAGCAAAGCCG
                      ____________________________________________________________
consensus             GTATTTCATCTTTTATCTGCAATGTTATTGACTTATTGGTATATAAAAGTAGCAAAGCCG