Contig 005799:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002N08Sequence240005130 (10)emb|CDY37307.1|1e-10BnaA01g25270D [Brassica napus]626005799 (4)
JMSF008P20Sequence239005130 (10)ref|XP_010913619.1|1e-06PREDICTED: RNA-binding protein with multiple splicing-like [Elaeis guineensis]534005799 (4)
JMSF028C10Sequence672005130 (10)emb|CBI25280.3|2e-79unnamed protein product [Vitis vinifera]534005799 (4)
JMSF043I22Sequence728005130 (10)emb|CBI25280.3|4e-79unnamed protein product [Vitis vinifera]606005799 (4)

Alignment

This contig is upended


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rJMSF028C10+                                        TTNTTTTGGGGGGNTAACNTCCTNTTTTTT
rJMSF008P20+                                                                TTTTTT
rJMSF002N08+                                                                TTTTTT
                      ____________________________________________________________
consensus                                           TTNTTTTGGGGGGNTAACNTCCTNTTTTTT
 
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rJMSF028C10+          TTTNNTNTTAGTGAGAGTGNACATTGGGTAAACCTCGATTTGTAATCCTAGCNGGCAAAG
rJMSF008P20+          TTTTNTNTTAGTGAGAGTGTACATTGGGTAAACCTCGATTTGTAATCCTAGCTGGCAAAG
rJMSF002N08+          TTTTNTNTTAGTGAGAGTGTACATTGGGTAAACCTCGATTTGTAATCCTNGCTGGCAAAG
rJMSF043I22+                 TTAGTGAGAGTGTACATTGGGTAAACCTCGATTTGTAATCCTAGCTGGCAAAG
                      ____________________________________________________________
consensus             TTTTNTNTTAGTGAGAGTGTACATTGGGTAAACCTCGATTTGTAATCCTAGCTGGCAAAG
 
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rJMSF028C10+          ANCCAAAAAGAAGGTAANCCAACTTCGGTTGCTGGCTCAAACCAAAAAGGTCAATAGGCC
rJMSF008P20+          ANCCAAAAAGAAGGTAANCCAACTTCGGTTGCTGGCTCAANCCAAAAAGGTCAATAGGCC
rJMSF002N08+          ANCCAAAAAGAAGGTAANCCAACTTCGGTTGCTGGCTCAAACCAAAAAGGTCAATAGGCC
rJMSF043I22+          AACCAAAAAGAAGGTAAACCAACTTCGGTTGCTGGCTCAAACCAAAAAGGTCAATAGGCC
                      ____________________________________________________________
consensus             AACCAAAAAGAAGGTAAACCAACTTCGGTTGCTGGCTCAAACCAAAAAGGTCAATAGGCC
 
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rJMSF028C10+          ACTCCCAACGCCACTCCTGNTGGGAGTCGAATTGTAACCNTGTGGTTACCTAGTCAACAG
rJMSF008P20+          ACTCCCAACGCCACTCCTGTTGGGAGTCGAANTGTAACCCTGTGGTTACCTAGTCAACAG
rJMSF002N08+          ACTCCCAACGCCACTCCTGTTGGGAGTCGAATTGTAACCNTGTGGTTACCTAGTCAACAG
rJMSF043I22+          ACTCCCAACGCCACTCCTGTTGGGAGTCGAATTGTAACCTTGTGGTTACCTAGTCAACAG
                      ____________________________________________________________
consensus             ACTCCCAACGCCACTCCTGTTGGGAGTCGAATTGTAACCTTGTGGTTACCTAGTCAACAG
 
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rJMSF028C10+          CTTAACCAANTTGGGTGGAGTTTGCCCCCAATATCCTCCTTTTTGCTAACATTAACTGTG
rJMSF008P20+          CTTAACCAANTTGGGTGGAGTTTGCCCCCAATATCCTCCNTTTTGCTAACATTAACTGTG
rJMSF002N08+          CTTAACCAATTTGGGTGGAGTTTGCCCCCAATATCCTCCTTTTTGCTAACATTAACTGTG
rJMSF043I22+          CTTAACCAATTTGGGTGGAGTTTGCCCCCAATATCCTCCTTTTTGCTAACATTAACTGTG
                      ____________________________________________________________
consensus             CTTAACCAATTTGGGTGGAGTTTGCCCCCAATATCCTCCTTTTTGCTAACATTAACTGTG
 
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rJMSF028C10+          GATCTTCTAATGGTATTTTCGGTANTGANTGCNGCCNGTTCTGAGTTAAAGATGTGNTTG
rJMSF008P20+          GATCTTCTANTGGTATTTTCGGTANTGANTGCNGCCNGTTCTGAGTTAAAGATGTGNTTG
rJMSF002N08+          GATCTTCTANTGGTATTTTCGGTANTGANTGCTGCCNGTTTTGAGTTAAAGATGTGTTTG
rJMSF043I22+          GATCTTCTAATGGTATTTTCGGTATTGATTGCTGCCTGTTTTGAGTTAAAGATGTGTTTG
                      ____________________________________________________________
consensus             GATCTTCTAATGGTATTTTCGGTATTGATTGCTGCCTGTTTTGAGTTAAAGATGTGTTTG
 
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rJMSF028C10+          AATAATAATCTNTGATACTNTTNTTNCTTCNTANTGATTAATTATATTGCAAGACATTAC
rJMSF008P20+          AATAATAATCTNTGATACTNTTNTTNCTTCNTANTGATTAATTATATTGCAAGACATTAC
rJMSF002N08+          AATAATAATCTNTGATACTCTTNTTNCTTCNTACTGATTAATTATATTGCAAGACATTAC
rJMSF043I22+          AATAATAATCTTTGATACTCTTCTTACTTCCTACTGATTAATTATATTGCAAGACATTAC
                      ____________________________________________________________
consensus             AATAATAATCTTTGATACTCTTCTTACTTCCTACTGATTAATTATATTGCAAGACATTAC
 
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rJMSF028C10+          TGTGACTGAACTGAANTTTGGACTAGTATGCACTGTTGTGTTGATAACNGGTTCAGGAAA
rJMSF008P20+          TGTGACTGAACTGAANTTTGGACTNGTATGCACTGTTGTGTTGATAACCGGTTCAGGAAA
rJMSF002N08+          TGTGACTGAACTGAANTTTGGACTAGTATGCACTGTTGTGTTGATAACNGGTTCAGGAAA
rJMSF043I22+          TGTGACTGAACTGAATTTTGGACTAGTATGCACTGTTGTGTTGATAACAGGTTCAGGAAA
                      ____________________________________________________________
consensus             TGTGACTGAACTGAATTTTGGACTAGTATGCACTGTTGTGTTGATAACCGGTTCAGGAAA
 
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rJMSF028C10+          TNTGGCANGCCAACCTATAAGTNGCCAATGGGTGCTTTGTGTTGAATTAGGNGAGTTAGA
rJMSF008P20+          TNTGGCANGCCAACCTATAAGTNGCCAATGGGTGCTTTGTGTTGAATTAGGNGAGTTAGA
rJMSF002N08+          TNTGGCANGCCAACCTATAAGTNGCCAATGGGTGCTTTGTGTTGAATTAGGNGAGTTAGA
rJMSF043I22+          TTTGGCATGCCAACCTATAAGTTGCCAATGGGTGCTTTGTGTTGAATTAGGTGAGTTAGA
                      ____________________________________________________________
consensus             TTTGGCATGCCAACCTATAAGTTGCCAATGGGTGCTTTGTGTTGAATTAGGTGAGTTAGA
 
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rJMSF028C10+          ANGTNGTAGTGAAAATT                                           
rJMSF008P20+          ANNTCGTAGTGAAAATT                                           
rJMSF002N08+          ANGTCGTAGTGAAAATTTGTATGATNTTNAGCTTTCCCACACTNGTAGNNATGGGNTAAA
rJMSF043I22+          ATGTAGTAGTGAAAATTTGTATGATTTT-AGCTTTCCCACACTAGTAGTTATGGGCTAAA
                      ____________________________________________________________
consensus             ATGTCGTAGTGAAAATTTGTATGATTTTNAGCTTTCCCACACTAGTAGTTATGGGCTAAA
 
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rJMSF002N08+          TTGTNGTCAACAT                                               
rJMSF043I22+          TTGTTGTCAACATTTTACTTTCATTGGAGCTACAGCTCAAATGTATTTCTACCCTGCTTT
                      ____________________________________________________________
consensus             TTGTTGTCAACATTTTACTTTCATTGGAGCTACAGCTCAAATGTATTTCTACCCTGCTTT