Contig 005797:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF052G20-                                                                GCGCGAG
JMSF043B22-                                       GGCCGCGTACTTTTTTTTTCTTGTTGCGCGAG
                      ____________________________________________________________
consensus                                         GGCCGCGTACTTTTTTTTTCTTGTTGCGCGAG
 
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JMSF052G20-           ACCTAAATTTCCCAAATCCCTAAATTCGCCAAATCTCTTCTGCTACGTCCGTCCTCCGTC
JMSF043B22-           ACCTAAATTTCCCAAATCCCTAAATTCGCCAAATCTCTTCTGCTACGTCCGTCCTCCGTC
                      ____________________________________________________________
consensus             ACCTAAATTTCCCAAATCCCTAAATTCGCCAAATCTCTTCTGCTACGTCCGTCCTCCGTC
 
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JMSF052G20-           TTCCTTCTACTCACGCCACGCTCTCCATCCACAGCCTCCGTCTCCGGTCACACTCCAGCC
JMSF043B22-           TTCCTTCTACTCACGCCACGCTCTCCATCCACAGCCTCCGTCTCCGGTCACACTCCAGCC
                      ____________________________________________________________
consensus             TTCCTTCTACTCACGCCACGCTCTCCATCCACAGCCTCCGTCTCCGGTCACACTCCAGCC
 
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JMSF052G20-           GGCAGCCGCCTCCATCACCATCGCCGATCACGCTCCAGGCCTCCAGCCGCTTCCGTCGAC
JMSF043B22-           GGCAGCCGCCTCCATCACCATCGCCGATCACGCTCCAGGCCTCCAGCCGCTTCCGTCGAC
                      ____________________________________________________________
consensus             GGCAGCCGCCTCCATCACCATCGCCGATCACGCTCCAGGCCTCCAGCCGCTTCCGTCGAC
 
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JMSF052G20-           CATCGCAGACTCGCAGACTCGCAGTCGCAGCAGGCTTCGTCCATTCTTCGTCGCAGTCGG
JMSF043B22-           CATCGCANACTCGCANACTCGCAGTCGCAGCAGGCTTCGTCCATTCTTCGTCGCAGTCGG
rJMSF043B22+                                                         TCGTCGCAGTCGG
                      ____________________________________________________________
consensus             CATCGCAGACTCGCAGACTCGCAGTCGCAGCAGGCTTCGTCCATTCTTCGTCGCAGTCGG
 
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JMSF052G20-           CAGTCGCAGGCTTCTTCGGTCGCCGGTCCAATGAAGCGTCCAGACTCCCAGTGGCAGTCG
JMSF043B22-           CAGTCGCAGGCTTCTTCGGTCGCCGGTCCAATGAAGCGTCCAGACTCCCAGTGGCAGTCG
rJMSF043B22+          CAGTCGCAGGCTTCTTCGGTCGCCGGTCCAATGAAGCGTCCAGACTCCCAGTGGCAGTCG
                      ____________________________________________________________
consensus             CAGTCGCAGGCTTCTTCGGTCGCCGGTCCAATGAAGCGTCCAGACTCCCAGTGGCAGTCG
 
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JMSF052G20-           TAGGCCTCCATCTTCACAG----TATATGAAGAACCAGAAAACGTGCTTCAACCTTTAAG
JMSF043B22-           TAGGCCTCCATCTTCACAGGTAATATATGAAGAACCAGAAAACGTGCTTCAACCTTTAAG
rJMSF052G20+                              CAGTATATGAAGAACCAGAAAACGTGCTTCAACCTTTAAG
rJMSF043B22+          TAGGCCTCCATCTTCACAGGTAATATATGAAGAACCAGAAAACGTGCTTCAACCTTTAAG
                      ____________________________________________________________
consensus             TAGGCCTCCATCTTCACAGGTAATATATGAAGAACCAGAAAACGTGCTTCAACCTTTAAG
 
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JMSF052G20-           GCAAGCTTTGGAAGATTTGGAACATCTAGAG                             
JMSF043B22-           GCAAGCTTTGGAAGATTTGGAACATCTAGAGATGGTTTCTTAATCCTTACAGTCGCGTAT
rJMSF052G20+          GCAAGCTTTGGAAGATTTGGAACATCTAGAGATGGTTTCTTAATCCTTACAGTCGCGTAT
rJMSF043B22+          GCAAGCTTTGGAAGATTTGGAACATCTAGAGATGGTTTCTTAATCCTTACAGTCGCGTAT
                      ____________________________________________________________
consensus             GCAAGCTTTGGAAGATTTGGAACATCTAGAGATGGTTTCTTAATCCTTACAGTCGCGTAT
 
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JMSF043B22-           TTATGGCTTAAGCTCTGCAAATTATGCAACAAATATTGGCACCATATCATCAAAATAATC
rJMSF052G20+          TTATGGCTTAAGCTCTGCAAATTATGCAACAAATATTGGCACCATATCATCAAAATAATC
rJMSF043B22+          TTATGGCTTAAGCTCTGCAAATTATGCAACAAATATTGGCACCATATCATCAAAATAATC
                      ____________________________________________________________
consensus             TTATGGCTTAAGCTCTGCAAATTATGCAACAAATATTGGCACCATATCATCAAAATAATC
 
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JMSF043B22-           ATTGGATACTCATCGTGATTAGCCCACCTTCTAAAACGGTGTATGTGTTTGATCCTTTGA
rJMSF052G20+          ATTGGATACTCATCGTGATTAGCCCACCTTCTAAAACGGTGTATGTGTTTGATCCTTTGA
rJMSF043B22+          ATTGGATACTCATCGTGATTAGCCCACCTTCTAAAACGGTGTATGTGTTTGATCCTTTGA
                      ____________________________________________________________
consensus             ATTGGATACTCATCGTGATTAGCCCACCTTCTAAAACGGTGTATGTGTTTGATCCTTTGA
 
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JMSF043B22-           AAAGTGTGGATCGCAACCTTGCTGTCAAAGTTTTTGTGAATATGGCATTTCGATCTGTTC
rJMSF052G20+          AAAGTGTGGATCGCAACCTTGCTGTCAAAGTTTTTGTGAATATGGCATTTCGATCTGTTC
rJMSF043B22+          AAAGTGTGGATCGCAACCTTGCTGTCAAAGTTTTTGTGAATATGGCATTTCGATCTGTTC
                      ____________________________________________________________
consensus             AAAGTGTGGATCGCAACCTTGCTGTCAAAGTTTTTGTGAATATGGCATTTCGATCTGTTC
 
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JMSF043B22-           CTGGACGAG                                                   
rJMSF052G20+          CTGGACGAGGAATTAGAACGGTTGATTGGAAAAAATGCAGATGTCCACAACAACCAGGAG
rJMSF043B22+          CTGGACGAGGAATTAGAACGGTTGATTGGAAAAAATGCAGATGTCCACAACAACCAGGAG
                      ____________________________________________________________
consensus             CTGGACGAGGAATTAGAACGGTTGATTGGAAAAAATGCAGATGTCCACAACAACCAGGAG
 
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rJMSF052G20+          GTTCTGAATGTGGATATTACATACTGCGATACATGTTTGAAATCGTTAGTAAGCATTCAG
rJMSF043B22+          GTTCTGAATGTGGATATTACATACTGCGATACATGTTTGAAATCGTTAGTAAGCATTCAG
                      ____________________________________________________________
consensus             GTTCTGAATGTGGATATTACATACTGCGATACATGTTTGAAATCGTTAGTAAGCATTCAG
 
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rJMSF052G20+          AGCTTCATTGTCTAGAAGAGATATTTGAACAGCCCACCTACTCCATAGATGAAATAGATG
rJMSF043B22+          AGCTTCATTGTCTAGAAGAGATATTTGAACAGCCCACCTACTCCATAGATGAAATAGATG
                      ____________________________________________________________
consensus             AGCTTCATTGTCTAGAAGAGATATTTGAACAGCCCACCTACTCCATAGATGAAATAGATG
 
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rJMSF052G20+          ACATTCGCGAGTTGTGGGCACAATACTTTGTAGATCAGTGCTTGTAACTTTAGTTGGTTT
rJMSF043B22+          ACATTCGCGAGTTGTGGGCACAATACTTTGTAGATCAGTGCTTGTAACTTTAGTTGGTTT
                      ____________________________________________________________
consensus             ACATTCGCGAGTTGTGGGCACAATACTTTGTAGATCAGTGCTTGTAACTTTAGTTGGTTT
 
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rJMSF052G20+          AAACATTATATATCATTATTATTATTAATTAACTTATGTTTATGTTTTGTTAAAAAATTG
rJMSF043B22+          AAACATTATATATCATTATTATTATTAATTAACTTATGTTTATGTTTTGTTAAAAAATTG
                      ____________________________________________________________
consensus             AAACATTATATATCATTATTATTATTAATTAACTTATGTTTATGTTTTGTTAAAAAATTG