Contig 005796:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007H13Sequence475010862 (4)678005796 (3)ref|XP_006345371.1|3e-67PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum tuberosum]
JMSF010E15Sequence247010862 (4)739005796 (3)ref|XP_006345371.1|3e-85PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum tuberosum]
JMSF042O05Sequence761010862 (4)ref|XP_009605007.1|9e-15PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Nicotiana tomentosifo592005796 (3)ref|XP_006345371.1|2e-59PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF010E15+                                                  TGTTCAGCCATTCCTTTTAC
                      ____________________________________________________________
consensus                                                     TGTTCAGCCATTCCTTTTAC
 
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rJMSF007H13+                       CTCATATGAAGCTGTACATACTATTCAAGACGCTCTTCATCTG-TTT
rJMSF010E15+          TCCACCTTGATATCTCATATGAAGCTGTACATACTATTCAAGACGCTCTTCATCTGTTTT
                      ____________________________________________________________
consensus             TCCACCTTGATATCTCATATGAAGCTGTACATACTATTCAAGACGCTCTTCATCTGTTTT
 
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rJMSF007H13+          CAGCCCCTGAGACACTTGAGGAGTACCGAACATCNCCAATGGGGAAGGCTGAAATAGGGA
rJMSF010E15+          CAGCCCCTGAGACACTTGAGGAGTACCGAACATCACCAATGGGGAAGGCTGAAATAGGGA
                      ____________________________________________________________
consensus             CAGCCCCTGAGACACTTGAGGAGTACCGAACATCACCAATGGGGAAGGCTGAAATAGGGA
 
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rJMSF007H13+          CTGCCAAAAAATCTATTAGCATACAAGCACTTCCCAGGATCATGATTTTACACTTGAAGC
rJMSF010E15+          CTGCCAAAAAATCTATTAGCATACAAGCACTTCCCAGGATCATGATTTTACACTTGAAGC
rJMSF042O05+                 AAAATCTATTAGCATACAAGCACTTCCCAGGATCATGATTTTACACTTGAAGC
                      ____________________________________________________________
consensus             CTGCCAAAAAATCTATTAGCATACAAGCACTTCCCAGGATCATGATTTTACACTTGAAGC
 
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rJMSF007H13+          GGTTTGGCTATGGAAGTCATGGAAGCACCAAATTGCATAAACCAGTGCAGTTTCCACTTG
rJMSF010E15+          GGTTTGGCTATGGAAGTCATGGAAGCACCAAATTGCATAAACCAGTGCAGTTTCCACTTG
rJMSF042O05+          GGTTTGGCTATGGAAGTCATGGAAGCACCAAATTGCATAAACCAGTGCAGTTTCCACTTG
                      ____________________________________________________________
consensus             GGTTTGGCTATGGAAGTCATGGAAGCACCAAATTGCATAAACCAGTGCAGTTTCCACTTG
 
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rJMSF007H13+          AACTGGTGATAAGCCGTGATTTACTTGCTGCTTCAANTAATGAGAGTCGGAAATACGAGC
rJMSF010E15+          AACTGGTGATAAGCCGTGATTTACTTGCTGCTTCAACTAATGAGAGTCGGAAATACGAGC
rJMSF042O05+          AACTGGTGATAAGCCGTGATTTACTTGCTGCTTCAACTAATGAGAGTCGGAAATACGAGC
                      ____________________________________________________________
consensus             AACTGGTGATAAGCCGTGATTTACTTGCTGCTTCAACTAATGAGAGTCGGAAATACGAGC
 
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rJMSF007H13+          TAGTTTCCACAATAACCCACCATGGGAGGGAAGCATCAAGGGGACACTATACTGCTGACT
rJMSF010E15+          TAGTTTCCACAATAACCCACCATGGGAGGGAAGCATCAAGGGGACACTATACTGCTGACT
rJMSF042O05+          TAGTTTCCACAATAACCCACCATGGGAGGGAAGCATCAAGGGGACACTATACTGCTGACT
                      ____________________________________________________________
consensus             TAGTTTCCACAATAACCCACCATGGGAGGGAAGCATCAAGGGGACACTATACTGCTGACT
 
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rJMSF007H13+          GCCGCTACCCTTGTGGGAAATGGTTACGGTTTGATGATGCCACCGTTACTGCTGTCAGCA
rJMSF010E15+          GCCGCTACCCTTGTGGGAAATGGTTACGGTTTGATGATGCCACCGTTACTGCTGTCAGCA
rJMSF042O05+          GCCGCTACCCTTGTGGGAAATGGTTACGGTTTGATGATGCCACCGTTACTGCTGTCAGCA
                      ____________________________________________________________
consensus             GCCGCTACCCTTGTGGGAAATGGTTACGGTTTGATGATGCCACCGTTACTGCTGTCAGCA
 
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rJMSF007H13+          CCATCAAGGTGCTGCATGACCAGGCTTACATTCTTTTCTACAGACAAATATAGAAGATCA
rJMSF010E15+          CCATCAAGGTGCTGCATGACCAGGCTTACATTCTTTTCTACAGACAAATATAGAAGATCA
rJMSF042O05+          CCATCAAGGTGCTGCATGACCAGGCTTACATTCTTTTCTACAGACAAATATAGAAGATCA
                      ____________________________________________________________
consensus             CCATCAAGGTGCTGCATGACCAGGCTTACATTCTTTTCTACAGACAAATATAGAAGATCA
 
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rJMSF007H13+          ACGACAATTACACAGTAACAATACAAGGAAAAGAATGCATGCCGATGCTGAGGAGTACAA
rJMSF010E15+          ACGACAATTACACAGTAACAATACAAGGAAAAGAATGCATGCCGATGCTGAGGAGTACAA
rJMSF042O05+          ACGACAATTACACAGTAACAATACAAGGAAAAGAATGCATGCCGATGCTGAGGAGTACAA
                      ____________________________________________________________
consensus             ACGACAATTACACAGTAACAATACAAGGAAAAGAATGCATGCCGATGCTGAGGAGTACAA
 
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rJMSF007H13+          ACCAGGTACTTGGCGATTCCCAAAGTGCAGTGTCTACTCTATCTCAAAGATATATGATGA
rJMSF010E15+          ACCAGGTACTTGGCGATTCCCAAAGTGCAGTGTCTACTCTATCTCAAAGATATTTGATGA
rJMSF042O05+          ACCAGGTACTTGGCGATTCCCAAAGTGCAGTGTCTACTCTATCTCAAAGATATATGATGA
                      ____________________________________________________________
consensus             ACCAGGTACTTGGCGATTCCCAAAGTGCAGTGTCTACTCTATCTCAAAGATATATGATGA
 
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rJMSF007H13+          ATTTAGTTAACACTTGTATTTGCTTGCCTACAATCGAATGAGATATATTATCCAGTNCCT
rJMSF010E15+          ATTTAGTTAACACTTGTATTTGCTTGCCTACAATCGAATGAGATATATTATCCAGTGCCT
rJMSF042O05+          ATTTAGTTAACACTTGTATTTGCTTGCCTACAATCGAATGAGATATATTATCCAGTGCCT
                      ____________________________________________________________
consensus             ATTTAGTTAACACTTGTATTTGCTTGCCTACAATCGAATGAGATATATTATCCAGTGCCT
 
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rJMSF007H13+          GTTAGGAGACAGATTTAAC                                         
rJMSF010E15+          GTTAGGAGACAGATTTAACCATGTACTAGCAATTTTGTTACTATTTATGTAT        
rJMSF042O05+          GTTAGGAGACAGATTTAA-CATGTACTAGCAATTTTGTTACTATTTATGTATTGAACCTT
                      ____________________________________________________________
consensus             GTTAGGAGACAGATTTAACCATGTACTAGCAATTTTGTTACTATTTATGTATTGAACCTT