Contig 005793:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF042J01Sequence799005793 (2)ref|XP_006355133.1|2e-08PREDICTED: putative late blight resistance protein homolog R1C-3-like isoform X807005793 (2)

Alignment

This contig is upended


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JMSF042J01-                            GTCCTCAAAGATAAAAAGCTCAAAAGGTTGGAGGCTTACACTG
                      ____________________________________________________________
consensus                              GTCCTCAAAGATAAAAAGCTCAAAAGGTTGGAGGCTTACACTG
 
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JMSF042J01-           ATTCTTTCCCATGTCTTGAGCATCTAGTCCTAAGATGTTGTGAGTGTTTGGAAGAGATCC
                      ____________________________________________________________
consensus             ATTCTTTCCCATGTCTTGAGCATCTAGTCCTAAGATGTTGTGAGTGTTTGGAAGAGATCC
 
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JMSF042J01-           CTAGCAGTTTTGGAGAAATTTTCTGCTTCAAGTCAATTGAAATGGATAGGTTTAGCCACC
                      ____________________________________________________________
consensus             CTAGCAGTTTTGGAGAAATTTTCTGCTTCAAGTCAATTGAAATGGATAGGTTTAGCCACC
 
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JMSF042J01-           GCCCTTCCATTGTTGCGTCTGCTAGGATTATTCAAGAGAAGCTAAAGAAGAATTTTGGAA
                      ____________________________________________________________
consensus             GCCCTTCCATTGTTGCGTCTGCTAGGATTATTCAAGAGAAGCTAAAGAAGAATTTTGGAA
 
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JMSF042J01-           AAGAAAATTTTGAGATTAAAATCCAAGGGCAGGGGCAGGTGCCTGAATATATAGAAGAGT
                      ____________________________________________________________
consensus             AAGAAAATTTTGAGATTAAAATCCAAGGGCAGGGGCAGGTGCCTGAATATATAGAAGAGT
 
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JMSF042J01-           GTGTAGAAGATGTTGAAAAGGAAAATTGTGAGATAAAAATGGAGGAGGAGGGTGAATCAT
                      ____________________________________________________________
consensus             GTGTAGAAGATGTTGAAAAGGAAAATTGTGAGATAAAAATGGAGGAGGAGGGTGAATCAT
 
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JMSF042J01-           TAGCAGGGGCAGGGGCAGGGGGGCAGATGGTAGAGGAAGAAATTGGAGTTGGGAAATTGA
                      ____________________________________________________________
consensus             TAGCAGGGGCAGGGGCAGGGGGGCAGATGGTAGAGGAAGAAATTGGAGTTGGGAAATTGA
 
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JMSF042J01-           AGTCTTATATCCACAAATTAAAGAAAACGAGATTCAGAAATCTGTTAAAGAGGCGCAACC
                      ____________________________________________________________
consensus             AGTCTTATATCCACAAATTAAAGAAAACGAGATTCAGAAATCTGTTAAAGAGGCGCAACC
 
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JMSF042J01-           CCAAAACTGGCTCTTCCAACCAGATTCAGATTTGAGAAGAGCAACATGAGATAAGGCTAG
                      ____________________________________________________________
consensus             CCAAAACTGGCTCTTCCAACCAGATTCAGATTTGAGAAGAGCAACATGAGATAAGGCTAG
 
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JMSF042J01-           AAGCTACAGCCTGATCTCATTCATTCTTCAATTTTAATTTATTTTCTATTCGATACCAAC
                      ____________________________________________________________
consensus             AAGCTACAGCCTGATCTCATTCATTCTTCAATTTTAATTTATTTTCTATTCGATACCAAC
 
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JMSF042J01-           TTCTTTCCAAAATCTGTTACTAATAATTTTCCAATCTCATTTCATTTTGTCGATTTTTTC
rJMSF042J01+                                           ATCTCATTTCATTTTGTCGATTTTTTC
                      ____________________________________________________________
consensus             TTCTTTCCAAAATCTGTTACTAATAATTTTCCAATCTCATTTCATTTTGTCGATTTTTTC
 
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JMSF042J01-           ATAGGAAGAGTCTGTAAAAGACAACTTAGTGGGTGGAGCAATTAGAAAACTGGTATCTAC
rJMSF042J01+          ATAGGAAGAGTCTGTAAAAGACAACTTAGTGGGTGGAGCAATTAGAAAACTGGTATCTAC
                      ____________________________________________________________
consensus             ATAGGAAGAGTCTGTAAAAGACAACTTAGTGGGTGGAGCAATTAGAAAACTGGTATCTAC
 
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JMSF042J01-           ATATTTATATCTGCTAATAATATAATTGGATTTAGCCCCTTTACATGTTAGTGAAGGATC
rJMSF042J01+          ATATTTATATCTGCTAATAATATAATTGGATTTAGCCCCTTTACATGTTAGTGAAGGATC
                      ____________________________________________________________
consensus             ATATTTATATCTGCTAATAATATAATTGGATTTAGCCCCTTTACATGTTAGTGAAGGATC
 
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JMSF042J01-           ATGCACTGGTATCCTTGTACAACTAGTGTCATAATA                        
rJMSF042J01+          ATGCACTGGTATCCTTGTACAACTAGTGTCATAATAATGTTGGGAAAACGTCATTTTTGT
                      ____________________________________________________________
consensus             ATGCACTGGTATCCTTGTACAACTAGTGTCATAATAATGTTGGGAAAACGTCATTTTTGT
 
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rJMSF042J01+          TTGACCAATTGCACCTCCAATTTGGGTCAAGATGCTTAATTACAAGGCATATATGTTGCT
                      ____________________________________________________________
consensus             TTGACCAATTGCACCTCCAATTTGGGTCAAGATGCTTAATTACAAGGCATATATGTTGCT
 
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rJMSF042J01+          TCTCACTTCATTAACTCATCTGATCTCCAGGCCAGTTCAAAAATTAGATTTCTTGTTTTA
                      ____________________________________________________________
consensus             TCTCACTTCATTAACTCATCTGATCTCCAGGCCAGTTCAAAAATTAGATTTCTTGTTTTA
 
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rJMSF042J01+          TGTTTTTTCTTGAATTCAGTTACAAGTTGTATTGTTAATCTTACTTGCCTTTTCCAATCT
                      ____________________________________________________________
consensus             TGTTTTTTCTTGAATTCAGTTACAAGTTGTATTGTTAATCTTACTTGCCTTTTCCAATCT
 
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rJMSF042J01+          GTTGAGCAGGGCAACATTAAGTTGAGCATATCTGGTATCAGCATCATACCATTCTGGTGT
                      ____________________________________________________________
consensus             GTTGAGCAGGGCAACATTAAGTTGAGCATATCTGGTATCAGCATCATACCATTCTGGTGT
 
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rJMSF042J01+          TTCAGTCCAGTTGGAGCCCATTATCTGTTCTGTTGTTGGACATAATACAAAGATGCAGCA
                      ____________________________________________________________
consensus             TTCAGTCCAGTTGGAGCCCATTATCTGTTCTGTTGTTGGACATAATACAAAGATGCAGCA
 
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rJMSF042J01+          ATCAACGTATATATATGGCTTTGTGAAGAGATCTGCTGCTTGATCTTATGACTTTCAGTG
                      ____________________________________________________________
consensus             ATCAACGTATATATATGGCTTTGTGAAGAGATCTGCTGCTTGATCTTATGACTTTCAGTG
 
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rJMSF042J01+          GACTAATGTAAGTTCACCATCTTCCACTAGCTCTCCCAAGAATGTGTTTGGGTGTCAAAG
                      ____________________________________________________________
consensus             GACTAATGTAAGTTCACCATCTTCCACTAGCTCTCCCAAGAATGTGTTTGGGTGTCAAAG
 
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rJMSF042J01+          GATATCTCTGAAACAAGTAAGGCTGGCAATTATGTTCAGTGATAGTATATTGGAATTGAA
                      ____________________________________________________________
consensus             GATATCTCTGAAACAAGTAAGGCTGGCAATTATGTTCAGTGATAGTATATTGGAATTGAA
 
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rJMSF042J01+          TAAGGAATTGAAAGAACAGCACCAAACAACATGAAATCTATGTTTGGGTTGAAGATTAGT
                      ____________________________________________________________
consensus             TAAGGAATTGAAAGAACAGCACCAAACAACATGAAATCTATGTTTGGGTTGAAGATTAGT
 
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rJMSF042J01+          TAATGAAGTCGCGAGAAACCAATTCTTGCCATTTAGCATCTGTAATTGACGACTCCACAT
                      ____________________________________________________________
consensus             TAATGAAGTCGCGAGAAACCAATTCTTGCCATTTAGCATCTGTAATTGACGACTCCACAT