Contig 005790:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030I19Sequence689009540 (6)ref|XP_009769897.1|4e-111PREDICTED: uncharacterized protein LOC104220687 isoform X1 [Nicotiana sylvestri733005790 (3)ref|XP_009790898.1|7e-44PREDICTED: uncharacterized protein LOC104238274 isoform X3 [Nicotiana sylvestri
JMSF042F07Sequence831009540 (6)ref|XP_009769897.1|2e-147PREDICTED: uncharacterized protein LOC104220687 isoform X1 [Nicotiana sylvestri759005790 (3)ref|XP_009790898.1|7e-45PREDICTED: uncharacterized protein LOC104238274 isoform X3 [Nicotiana sylvestri
JMSF046P06Sequence756009540 (6)ref|XP_009600009.1|5e-109PREDICTED: uncharacterized protein LOC104095563 isoform X1 [Nicotiana tomentosi173005790 (3)ref|XP_009769899.1|6e-04PREDICTED: uncharacterized protein LOC104220687 isoform X3 [Nicotiana sylvestri

Alignment

This contig is upended


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rJMSF042F07+                               CTCTTTACATACACCTCCAGGGTTTTGTGCATGTGATGG
                      ____________________________________________________________
consensus                                  CTCTTTACATACACCTCCAGGGTTTTGTGCATGTGATGG
 
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rJMSF030I19+                                      GGAAGTGACAGCAGTGGTGGCAATGCTGCTGA
rJMSF042F07+          AGCAGGTTGTTTTCATCGTGGTATCTCTGGAAGTGACAGCAGTGGTGGCAATGCTGCTGA
                      ____________________________________________________________
consensus             AGCAGGTTGTTTTCATCGTGGTATCTCTGGAAGTGACAGCAGTGGTGGCAATGCTGCTGA
 
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rJMSF030I19+          TTTTGTTGACCCTGCGATATTAAGCTTTGTTAAGGGCACACCAATTAACAGTGTGAACAC
rJMSF042F07+          TTTTGTTGACCCTGCGATATTAAGCTTTGTTAAGGGCACACCAATTAACAGTGTGAACAC
                      ____________________________________________________________
consensus             TTTTGTTGACCCTGCGATATTAAGCTTTGTTAAGGGCACACCAATTAACAGTGTGAACAC
 
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rJMSF030I19+          CACAGGATTAGAGATGGGGAGAGCTTTTACTCCACAGCAGAGAACCCTGGAGGATGAGGC
rJMSF042F07+          CACAGGATTAGAGATGGGGAGAGCTTTTACTCCACAGCAGAGAACCCTGGAGGATGAGGC
                      ____________________________________________________________
consensus             CACAGGATTAGAGATGGGGAGAGCTTTTACTCCACAGCAGAGAACCCTGGAGGATGAGGC
 
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rJMSF030I19+          AAGACTCTGGCTTCTGATGCAGCAAAAATCTGCAGAGCAAGACAGTACAAGGCTATCTCA
rJMSF042F07+          AAGACTCTGGCTTCTGATGCAGCAAAAATCTGCAGAGCAAGACAGTACAAGGCTATCTCA
                      ____________________________________________________________
consensus             AAGACTCTGGCTTCTGATGCAGCAAAAATCTGCAGAGCAAGACAGTACAAGGCTATCTCA
 
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rJMSF030I19+          AATGTTTGCCCCTCCAGCTCCAACCACCACCCACCAGGATCTAAGGTTCCTTGGTCGGGG
rJMSF042F07+          AATGTTTGCCCCTCCAGCTCCAACCACCACCCACCAGGATCTAAGGTTCCTTGGTCGGGG
                      ____________________________________________________________
consensus             AATGTTTGCCCCTCCAGCTCCAACCACCACCCACCAGGATCTAAGGTTCCTTGGTCGGGG
 
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rJMSF030I19+          TGGAAACGAGTACTCTGGCGTGGACAACATGTATGGGTTTTCTTCAAGGCTGGTGGATCA
rJMSF042F07+          TGGAAACGAGTACTCTGGCGTGGACAACATGTATGGGTTTTCTTCAAGGCTGGTGGATCA
                      ____________________________________________________________
consensus             TGGAAACGAGTACTCTGGCGTGGACAACATGTATGGGTTTTCTTCAAGGCTGGTGGATCA
 
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rJMSF030I19+          ATCCCAAAACTTAGATCCTTCTTCCTTGGCAGATTTGTCTCAGCAGAAATTTGTAGGCGG
rJMSF042F07+          ATCCCAAAACTTAGATCCTTCTTCCTTGGCAGATTTGTCTCAGCAGAAATTTGTAGGCGG
                      ____________________________________________________________
consensus             ATCCCAAAACTTAGATCCTTCTTCCTTGGCAGATTTGTCTCAGCAGAAATTTGTAGGCGG
 
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rJMSF030I19+          CGGGGGCGGGGGGCATATTTCTTCTCGCGGGTACCAGCATCAGCATGGTTTGGATGAAAT
rJMSF046P06+                                                       TGGTTTGGANGAAAT
rJMSF042F07+          CGGGGGCGGGGGGCATATTTCTTCTCGCGGGTACCAGCATCAGCATGGTTTGGATGAAAT
                      ____________________________________________________________
consensus             CGGGGGCGGGGGGCATATTTCTTCTCGCGGGTACCAGCATCAGCATGGTTTGGATGAAAT
 
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rJMSF030I19+          CCAGTGCAGGAATGAAGCGGGCATAGGTGGAGAGGTAGAGAGAAATCAGAGATTTGGTGT
rJMSF046P06+          CCCNTGCNGGAANGAANCGGNCATAGGNGGAGAGGTAGNGAGAAATCNGAGATTTGGNGT
rJMSF042F07+          CCAGTGCAGGAATGAAGCGGGCATAGGTGGAGAGGTAGAGAGAAATCAGAGATTTGGTGT
                      ____________________________________________________________
consensus             CCAGTGCAGGAATGAAGCGGGCATAGGTGGAGAGGTAGAGAGAAATCAGAGATTTGGTGT
 
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rJMSF030I19+          AAACTACTTTGGTGGGGGTTATGGCGATTTGAGGTTCCAGGCGCCAAGCTCAGGCGATGT
rJMSF046P06+          AAANTNCTTTGGTGGGGGTTANGGCGATTTGAGGTTCCCGGNGCCAAGCTCNGGCGATGT
rJMSF042F07+          AAACTACTTTGGTGGGGGTTATGGCGATTTGAGGTTCCAGGCGCCAAGCTCAGGCGATGT
                      ____________________________________________________________
consensus             AAACTACTTTGGTGGGGGTTATGGCGATTTGAGGTTCCAGGCGCCAAGCTCAGGCGATGT
 
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rJMSF030I19+          ATACACCCGAGTATTTGGGATGTAAGTGAGATTACTTACTTAGTAGTAAAACAAACATAT
rJMSF046P06+          ATACNCCCGNGTATTTGGGATGNAAGTGAGATTA                          
rJMSF042F07+          ATACACCCGAGTATTTGGGATGTAAGTGAGATTACTTACTTAGTAGTAAAACAAACATAT
                      ____________________________________________________________
consensus             ATACACCCGAGTATTTGGGATGTAAGTGAGATTACTTACTTAGTAGTAAAACAAACATAT
 
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rJMSF030I19+          ATGATGCCGGTTATGTGGCAAGAAAGGCATGTTGTTAGCCTCCTATGAATGATG      
rJMSF042F07+          ATGATGCCGTTAANGTGGCAAGAAAGGCATGTTGTTAGCCTCCTATGAATGATGAATCAT
                      ____________________________________________________________
consensus             ATGATGCCGTTTATGTGGCAAGAAAGGCATGTTGTTAGCCTCCTATGAATGATGAATCAT