Contig 005786:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041I19Sequence835005786 (2)ref|XP_009772476.1|2e-106PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104222853 [Nicotiana594005786 (2)gb|AFI57511.1|1e-31NEP-TC [Solanum betaceum]

Alignment

This contig is upended


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JMSF041I19-                       GGCCAACTTCCAATTAAGCCAGTCTTCACTCTTCAGCCCTACACGGAG
                      ____________________________________________________________
consensus                         GGCCAACTTCCAATTAAGCCAGTCTTCACTCTTCAGCCCTACACGGAG
 
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JMSF041I19-           GCGGAGGGGCTGCAGCCACCGCGCGATTGGATACACAGTTTTACGCAATAATTAGATGGA
                      ____________________________________________________________
consensus             GCGGAGGGGCTGCAGCCACCGCGCGATTGGATACACAGTTTTACGCAATAATTAGATGGA
 
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JMSF041I19-           AAATGAGAAGAAAATAGAGAGCTATGTGGTGGTGCACAACATAGCGAAAAGGCATAACGT
                      ____________________________________________________________
consensus             AAATGAGAAGAAAATAGAGAGCTATGTGGTGGTGCACAACATAGCGAAAAGGCATAACGT
 
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JMSF041I19-           GGGGACACTAGCTCGCAGCGCCACCGCCTTCGGCGTCTCTGAACTGATTCTAGTCGGCCG
                      ____________________________________________________________
consensus             GGGGACACTAGCTCGCAGCGCCACCGCCTTCGGCGTCTCTGAACTGATTCTAGTCGGCCG
 
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JMSF041I19-           GCGAGACTTCAACGCCTTCGGCAGCCACGGTTCCACCTCTCACGTTCGCTTCCGCCACTT
                      ____________________________________________________________
consensus             GCGAGACTTCAACGCCTTCGGCAGCCACGGTTCCACCTCTCACGTTCGCTTCCGCCACTT
 
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JMSF041I19-           TCACTCCCTCTCTGACGCTAAAAACTTCCTCAAGGAGAGAGATTGTGACATATGTGGAGT
                      ____________________________________________________________
consensus             TCACTCCCTCTCTGACGCTAAAAACTTCCTCAAGGAGAGAGATTGTGACATATGTGGAGT
 
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JMSF041I19-           GGAGATTACGGAAAATGCAATGGCTGTGAATCAGCACCCTTTCAAGAGGAGTACTGCTTT
                      ____________________________________________________________
consensus             GGAGATTACGGAAAATGCAATGGCTGTGAATCAGCACCCTTTCAAGAGGAGTACTGCTTT
 
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JMSF041I19-           TCTCCTTGGTAATGAGGGAACAGGGCTTTCAGCTAAGGAATGTGAGATCTGTGACTTCTT
                      ____________________________________________________________
consensus             TCTCCTTGGTAATGAGGGAACAGGGCTTTCAGCTAAGGAATGTGAGATCTGTGACTTCTT
 
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JMSF041I19-           TGTTTACATTCCGCAGTACGGGTGTGGAACTGCATCTCTGAATGTCACTGTGGCAGCTTC
rJMSF041I19+                             GGGTGTGGNACTGCATCTCTGAATGTCACTGTGGCAGCTTC
                      ____________________________________________________________
consensus             TGTTTACATTCCGCAGTACGGGTGTGGAACTGCATCTCTGAATGTCACTGTGGCAGCTTC
 
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JMSF041I19-           TATCGTTCTCCATCACTTTGGAGCTTGGGCCGGATTCCCTGAGATCTCGTGAAGGGAACA
rJMSF041I19+          TATCGTTCTCCATCACTTTGGAGCTTGGGCCGGATTCCCTGAGATCTCGTGAAGGGAACA
                      ____________________________________________________________
consensus             TATCGTTCTCCATCACTTTGGAGCTTGGGCCGGATTCCCTGAGATCTCGTGAAGGGAACA
 
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JMSF041I19-           AATATGTCGTTGCTGAAAGACCAAGTATGCAGGGTAAGAGAAATTACTGCATGGAAAGCG
rJMSF041I19+          AATATGTCGTTGCTGAAAGACCAAGTATGCAGGGTAAGAGAAATTACTGCATGGAAAGCG
                      ____________________________________________________________
consensus             AATATGTCGTTGCTGAAAGACCAAGTATGCAGGGTAAGAGAAATTACTGCATGGAAAGCG
 
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JMSF041I19-           CGGAATCGATTGCTGAAGAGCGAAAACTAAAAAAGGAAAATGCTTCAAATGGGTTCTTTG
rJMSF041I19+          CGGAATCGATTGCTGAAGAGCGAAAACTAAAAAAGGAAAATGCTTCAAATGGGTTCTTTG
                      ____________________________________________________________
consensus             CGGAATCGATTGCTGAAGAGCGAAAACTAAAAAAGGAAAATGCTTCAAATGGGTTCTTTG
 
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JMSF041I19-           ATGAGATTGGAAAAGAAGATTCTCCTTCCAACCTATTAGATACATTGTTTGCTGACTAGC
rJMSF041I19+          ATGAGATTGGAAAAGAAGATTCTCCTTCCAACCTATTAGATACATTGTTTGCTGACTAGC
                      ____________________________________________________________
consensus             ATGAGATTGGAAAAGAAGATTCTCCTTCCAACCTATTAGATACATTGTTTGCTGACTAGC
 
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JMSF041I19-           AAGGGAAGGGAACCCACCAGACTATCTCAATTAAATTCCCGCTCACAACTTAATCCAGTC
rJMSF041I19+          AAGGGAAGGGAACCCACCAGACTATCTCAATTAAATTCCCGCTCACAACTTAATCCAGTC
                      ____________________________________________________________
consensus             AAGGGAAGGGAACCCACCAGACTATCTCAATTAAATTCCCGCTCACAACTTAATCCAGTC
 
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JMSF041I19-           ATCATCT                                                     
rJMSF041I19+          ATCATCTCCACTCATTTGTTGCAGTAGATAGAAGCCCAGAAAGTACACAAATACAACCAT
                      ____________________________________________________________
consensus             ATCATCTCCACTCATTTGTTGCAGTAGATAGAAGCCCAGAAAGTACACAAATACAACCAT
 
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rJMSF041I19+          CCATCGTAAGGGAACGGCAAACCAAGCCATCTGGAATCCAAGGAAAGTTTAGCTGATCAA
                      ____________________________________________________________
consensus             CCATCGTAAGGGAACGGCAAACCAAGCCATCTGGAATCCAAGGAAAGTTTAGCTGATCAA
 
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rJMSF041I19+          TGAACCGAGCTAAAGATACCAAGAAACAAGTGTTGTATGACATATGTTCTGTTGTCAAGA
                      ____________________________________________________________
consensus             TGAACCGAGCTAAAGATACCAAGAAACAAGTGTTGTATGACATATGTTCTGTTGTCAAGA
 
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rJMSF041I19+          TTAACTTCACAGGAAATCCTAGATTGTTTTAGCAGTTAGAGCTTAATTTGCTGCAGATAT
                      ____________________________________________________________
consensus             TTAACTTCACAGGAAATCCTAGATTGTTTTAGCAGTTAGAGCTTAATTTGCTGCAGATAT