| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF010H15 | Sequence | 428 | 005249 (4) | dbj|BAE06271.1| | 5e-06 | cyclin A [Scutellaria baicalensis] | 764 | 005783 (4) | ref|XP_009796391.1| | 5e-57 | PREDICTED: cyclin-A1-4 [Nicotiana sylvestris] emb|CAA63543.1| cyclin A-like prot |
| JMSF041E17 | Sequence | 863 | 005249 (4) | ref|XP_011102309.1| | 3e-63 | PREDICTED: cyclin-A1-1 [Sesamum indicum] | 721 | 005783 (4) | ref|XP_009796391.1| | 7e-57 | PREDICTED: cyclin-A1-4 [Nicotiana sylvestris] emb|CAA63543.1| cyclin A-like prot |
| JMSF042L07 | Sequence | 716 | 005249 (4) | ref|XP_011102309.1| | 1e-25 | PREDICTED: cyclin-A1-1 [Sesamum indicum] | 683 | 005783 (4) | ref|XP_009796391.1| | 2e-49 | PREDICTED: cyclin-A1-4 [Nicotiana sylvestris] emb|CAA63543.1| cyclin A-like prot |
| JMSF044P23 | Sequence | 745 | 005249 (4) | ref|XP_011102309.1| | 4e-43 | PREDICTED: cyclin-A1-1 [Sesamum indicum] | 343 | 005783 (4) | gb|ADA70359.1| | 6e-10 | mitotic cyclin A1-like protein [Persea americana] |
This contig is upended
. : . : . : . : . : . :
rJMSF010H15+ TTTTAANTACTTGAAGTTGAAATGACAGCCCCGACAGCTAAATGC
____________________________________________________________
consensus TTTTAANTACTTGAAGTTGAAATGACAGCCCCGACAGCTAAATGC
. : . : . : . : . : . :
rJMSF042L07+ TCAATGAGGCTTCATCACTGCAATTGG
rJMSF010H15+ TTTTGAGGAGGTTTGTCCGTGCTACTCAAGGATTCAATGAGGCTTCATCACTGCAATTGG
rJMSF041E17+ TTTTGAGGAGGGTTGTCCGTGCTACTCAAGGATTCAATGAGGCTTCATCACTGCAATTGG
____________________________________________________________
consensus TTTTGAGGAGGTTTGTCCGTGCTACTCAAGGATTCAATGAGGCTTCATCACTGCAATTGG
. : . : . : . : . : . :
rJMSF042L07+ AGCATTNGGCCAGCTACCTTGCAGAGCTATCTCTTCTAGCATATGACATGCTTTGTTATT
rJMSF010H15+ AGCATTTGGCCAGCTACCTTGCAGAGCTATCTCTTCTAGCATATGACATGCTTTGTTATT
rJMSF041E17+ AGCATTTGGCCAGCTACCTTGCAGAGCTATCTCTTCTAGCATATGACATGCTTTGTTATT
____________________________________________________________
consensus AGCATTTGGCCAGCTACCTTGCAGAGCTATCTCTTCTAGCATATGACATGCTTTGTTATT
. : . : . : . : . : . :
rJMSF042L07+ CTCCTTCACTTGTTGCTGCTTCAGCAATTTTTCTGGCGAGATACACACTTACTCCTTCTA
rJMSF010H15+ CTCCTTCACTTGTTGCTGCTTCAGCAATTTTTCTGGCGAGATACACACTTACTCCTTCTA
rJMSF041E17+ CTCCTTCACTTGTTGCTGCTTCAGCAATTTTTCTGGCGAGATACACACTTACTCCTTCTA
____________________________________________________________
consensus CTCCTTCACTTGTTGCTGCTTCAGCAATTTTTCTGGCGAGATACACACTTACTCCTTCTA
. : . : . : . : . : . :
rJMSF042L07+ AGAAACCTTGGAACTCTACGTTGCGGCATTACACTCTCTACCAGCCATCTGATTTGCGTG
rJMSF010H15+ AGAAACCTTGGAACTCTACGTTGCGGCATTACACTCTCTACCAGCCATCTGATTTGCGTG
rJMSF041E17+ AGAAACCTTGGAACTCTACGTTGCGGCATTACACTCTCTACCAGCCATCTGATTTGCGTG
____________________________________________________________
consensus AGAAACCTTGGAACTCTACGTTGCGGCATTACACTCTCTACCAGCCATCTGATTTGCGTG
. : . : . : . : . : . :
rJMSF044P23+ GCAACAGCCACCATNNTNGTTNACCGGCAA
rJMSF042L07+ ACTGTGTTATGGCACTCCACAATCTTTGCTGCAACAGCCACCATTCTAGTTTACCGGCAA
rJMSF010H15+ ACTGTGTTATGGCACTCCACAATCTTTGCTGCAACAGCCACCATTCTAGTTTACCGGCAA
rJMSF041E17+ ACTGTGTTATGGCACTCCACAATCTTTGCTGCAACAGCCACCATTCTAGTTTACCGGCAA
____________________________________________________________
consensus ACTGTGTTATGGCACTCCACAATCTTTGCTGCAACAGCCACCATTCTAGTTTACCGGCAA
. : . : . : . : . : . :
rJMSF044P23+ TCAGAGAAAAANACAGCCAGCATAAGTATAAATTNGTCGCGAAGAAGATTTGCCCAACAT
rJMSF042L07+ TCAGAGAAAAATACAGCCAGCATAAGTATAAATTTGTCGCGAAGAAGATTTGCCCAACAT
rJMSF010H15+ TCAGAGAAAAATACAGCCAGCATAAGTATAAATTTGTCGCGAAGAAGATTTGCCCAACAT
rJMSF041E17+ TCAGAGAAAAATACAGCCAGCATAAGTATAAATTTGTCGCGAAGAAGATTTGCCCAACAT
____________________________________________________________
consensus TCAGAGAAAAATACAGCCAGCATAAGTATAAATTTGTCGCGAAGAAGATTTGCCCAACAT
. : . : . : . : . : . :
rJMSF044P23+ CAATACCTTTCGAGTTCTTCCANGACGTANGTAGCTGNTGNCNGTNGAACNCCGTNCNGG
rJMSF042L07+ CAATACCTTCTGAGTTCTTCCAAGACGTAAGTAGCTGATGACTGTTGAACGCCGTACTGG
rJMSF010H15+ CAATACCTTCTGAGTTCTTCCAAGACGTAAGTAGCTGATGACTGTTGAACGCCGTACTGG
rJMSF041E17+ CAATACCTTCTGAGTTCTTCCAAGACGTAAGTAGCTGATGACTGTTGAACGCCGTACTGG
____________________________________________________________
consensus CAATACCTTCTGAGTTCTTCCAAGACGTAAGTAGCTGATGACTGTTGAACGCCGTACTGG
. : . : . : . : . : . :
rJMSF044P23+ AAGTGCNCTCTCNTTAAGCACACCCCGNCAGGNGCCCNCNTCATTGGNAGAGCAAAGTTA
rJMSF042L07+ AAGTGCACTCTCCTTAAGCACACCCCGGCAGGTGCCCACATCATTGGAAGAGCAAAGTTA
rJMSF010H15+ AAGTGCACTCTCCTTAAGCACACCCCGGCAGGTGCCCACATCATTGGAAGAGCAAAGTTA
rJMSF041E17+ AAGTGCACTCTCCTTAAGCACACCCCGGCAGGTGCCCACATCATTGGAAGAGCAAAGTTA
____________________________________________________________
consensus AAGTGCACTCTCCTTAAGCACACCCCGGCAGGTGCCCACATCATTGGAAGAGCAAAGTTA
. : . : . : . : . : . :
rJMSF044P23+ ATCAATTTTTCTNTTNNTAAAATGCGNTAAAATTACTGGACGGCTGAACCCATGGGAGCT
rJMSF042L07+ ATCAATTTTTCTATTTGTAAAATGCGCTAAAATTACTGGATGGCTGAACCCATGGGAGCT
rJMSF010H15+ ATCAATTTTTCTATTTGTAAAATGCGCTAAAATTACTGGATGGCTGAACCCATGGGAGCT
rJMSF041E17+ ATCAATTTTTCTATTTGTAAAATGCGCTAAAATTACTGGATGGCTGAACCCATGGGAGCT
____________________________________________________________
consensus ATCAATTTTTCTATTTGTAAAATGCGCTAAAATTACTGGATGGCTGAACCCATGGGAGCT
. : . : . : . : . : . :
rJMSF044P23+ GTCNCNTGTGCTTCGCTGACTNGCACTTTGCAACTGTATAACGTTA
rJMSF042L07+ GTCTGTTGTGCTTCGCTGACTTGCACTTTGCAATTGTATAACGTTACTGTTTTTCGCTAG
rJMSF010H15+ GTCTGTTGTGCTTCGCTGACTTGCACTTTGCAATTGTATAACGTTACTGTTTTTCGCTAG
rJMSF041E17+ GTCTGTTGTGCTTCGCTGACTTGCACTTTGCAATTGTATAACGTTACTGTTTTTCGCTAG
____________________________________________________________
consensus GTCTGTTGTGCTTCGCTGACTTGCACTTTGCAATTGTATAACGTTACTGTTTTTCGCTAG
. : . : . : . : . : . :
rJMSF042L07+ TTCAGATTGTCTGTACTTGCAACTTGTGTACAGATGAGCTCTAAAGCTTGTATGGGCTGA
rJMSF010H15+ TTCAGATTGTCTGTACTTGCAACTTGTGTACAGATGAGCTCTAAAGCTTGTATGGGCTGA
rJMSF041E17+ TTCAGATTGTCTGTACTTGCAACTTGTGTACAGATGAGCTCTAAAGCTTGTATGGGCTGA
____________________________________________________________
consensus TTCAGATTGTCTGTACTTGCAACTTGTGTACAGATGAGCTCTAAAGCTTGTATGGGCTGA
. : . : . : . : . : . :
rJMSF042L07+ ACAACCTGATTTGAGAAACTAGTTTAGTGTTTTCTTTCTGTACTAGAGATGGGGGT
rJMSF010H15+ ACAACCTGATTTGAGAAACTAGTTTAGTGTTTTCTTTCTGTACTAGAGATGGGGGT
rJMSF041E17+ ACAACCTGATTTGAGAAACTAGTNTAGTGTTTTCTTTCTGTACTAGAGATGGGGGTATAT
____________________________________________________________
consensus ACAACCTGATTTGAGAAACTAGTTTAGTGTTTTCTTTCTGTACTAGAGATGGGGGTATAT