Contig 005781:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF040G03+                                     GACGACAGCAATATATCAAACATGTACCGTGCA
                      ____________________________________________________________
consensus                                        GACGACAGCAATATATCAAACATGTACCGTGCA
 
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rJMSF017F09+                                                                     T
rJMSF040G03+          ATACGAAGCCGCGCGTTTCAGTTCCCGGATTGGATCACAAAGCCCACCCGGAGCATAATT
                      ____________________________________________________________
consensus             ATACGAAGCCGCGCGTTTCAGTTCCCGGATTGGATCACAAAGCCCACCCGGAGCATAATT
 
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rJMSF017F09+          TTCCGGCTGCTCGATCCCAATCCGGTAACCAGAATGTCCATCGAGGAACTGATGAAGCTC
rJMSF040G03+          TTCCGGCTGCTCGATCCCAATCCGGTAACCAGAATGTCCATCGAGGAACTGATGAAGCTC
                      ____________________________________________________________
consensus             TTCCGGCTGCTCGATCCCAATCCGGTAACCAGAATGTCCATCGAGGAACTGATGAAGCTC
 
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rJMSF017F09+          CCCTGGTTCAAGAAGTCATCATCAGTGATAGATTTGACAGACGAACATCAATTCGGGAAC
rJMSF040G03+          CCCTGGTTCAAGAAGTCATCATCAGTGATAGATTTGACAGACGAACATCAATTCGGGAAC
                      ____________________________________________________________
consensus             CCCTGGTTCAAGAAGTCATCATCAGTGATAGATTTGACAGACGAACATCAATTCGGGAAC
 
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rJMSF017F09+          CAAGAGTTCGACAAAGATTGCAAACACTTAACCAAAATGAACGCATTCGATATCATTTCA
rJMSF040G03+          CAAGAGTTCGACAAAGATTGCAAACACTTAACCAAAATGAACGCATTCGATATCATTTCA
                      ____________________________________________________________
consensus             CAAGAGTTCGACAAAGATTGCAAACACTTAACCAAAATGAACGCATTCGATATCATTTCA
 
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rJMSF017F09+          ATGTCTCCCGGGTTGGATCTATCAGGGCTATTCCAGGCGGGATTGAAGAAGAAAGAAATG
rJMSF040G03+          ATGTCTCCCGGGTTGGATCTATCAGGGCTATTCCAGGCGGGATTGAAGAAGAAAGAAATG
                      ____________________________________________________________
consensus             ATGTCTCCCGGGTTGGATCTATCAGGGCTATTCCAGGCGGGATTGAAGAAGAAAGAAATG
 
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rJMSF017F09+          AGATTCACCACAAATTCCGAGGTAGGAGAGGTTGAGGAGAAGGTAAAGAAGATCGGGAGT
rJMSF040G03+          AGATTCACCACAAATTCCGAGGTAGGAGAGGTTGAGGAGAAGGTAAAGAAGATCGGGAGT
                      ____________________________________________________________
consensus             AGATTCACCACAAATTCCGAGGTAGGAGAGGTTGAGGAGAAGGTAAAGAAGATCGGGAGT
 
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rJMSF017F09+          GAAGCAGGGTATAGGGTGGAGAGGGGAAAGGGAGGGGGAATTAGACTGATAAAAGCAAGA
rJMSF040G03+          GAAGCAGGGTATAGGGTGGAGAGGGGAAAGGGAGGGGGAATTAGACTGATAAAAGCAAGA
                      ____________________________________________________________
consensus             GAAGCAGGGTATAGGGTGGAGAGGGGAAAGGGAGGGGGAATTAGACTGATAAAAGCAAGA
 
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rJMSF017F09+          GTAACGTTAATGGTGGAAATTCTTCAAGTGGCGCCGGAGCTATGGCTGGTGGAGATGAAG
rJMSF040G03+          GTAACGTTAATGGTGGAAATTCTTCAAGTGGCGCCGGAGCTATGGCTGGTGGAGATGAAG
                      ____________________________________________________________
consensus             GTAACGTTAATGGTGGAAATTCTTCAAGTGGCGCCGGAGCTATGGCTGGTGGAGATGAAG
 
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rJMSF017F09+          GTCGTCAATGGAGAAACGGAATTCGAGGACACACAATGGGAGGAGTTGAGAGTTGGGTTC
rJMSF040G03+          GTCGTCAATGGAGAAACGGAATTCGAGGACACACAATGGGAGGAGTTGAGAGTTGGGTTC
                      ____________________________________________________________
consensus             GTCGTCAATGGAGAAACGGAATTCGAGGACACACAATGGGAGGAGTTGAGAGTTGGGTTC
 
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rJMSF017F09+          AAAGAAATATCTTGTTTCATGCTAGTATAACAATACAACCATGAATCTTGAACCAGACAA
rJMSF040G03+          AAAGAAATATCTTGTTTCATGCTAGTATAACAATACAACCATGAATCTTGAACCAGACAA
                      ____________________________________________________________
consensus             AAAGAAATATCTTGTTTCATGCTAGTATAACAATACAACCATGAATCTTGAACCAGACAA
 
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rJMSF017F09+          CGCCAGTGATTGTCGCCGAGTTTCCACCAGAAAAGACGGCGGTTGAATTTCCGCCGCCGT
rJMSF040G03+          CGCCAGTGATTGTCGCCGAGTTTCCACCAGAAAAGACGGCGGTTGAATTTCCGCCGCCGT
                      ____________________________________________________________
consensus             CGCCAGTGATTGTCGCCGAGTTTCCACCAGAAAAGACGGCGGTTGAATTTCCGCCGCCGT
 
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rJMSF017F09+          CGGCGGCGGCACCAGGTGCTAGTTGTGTGCTTATCTATCTAGTGCAGACACAAGTCTGCT
rJMSF040G03+          CGGCGGCGGCACCAGGTGCTAGTTGTGTGCTTATCTATCTAGTGCAGACACAAGTCTGCT
                      ____________________________________________________________
consensus             CGGCGGCGGCACCAGGTGCTAGTTGTGTGCTTATCTATCTAGTGCAGACACAAGTCTGCT
 
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rJMSF017F09+          GTTTGTAAATCAAAGTTTTCCTTAATAGTATTATAGATGTGCACATAGGTTCTTAATTTC
rJMSF040G03+          GTTTGTAAATCAAAGTTTTCCTTAATAGTATTATAGATGTGCACATAGGTTCTTAATTTC
                      ____________________________________________________________
consensus             GTTTGTAAATCAAAGTTTTCCTTAATAGTATTATAGATGTGCACATAGGTTCTTAATTTC
 
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rJMSF017F09+          TTCTTTTTTTCTCGTTTCAGACTTTGTAATGCTTCTTCCTAAGTTCTAGAGATTC     
rJMSF040G03+          TTC-TTTTTTCTCGTTTCAGACTTTGTAATGCTTCTTCCTAAGTTCTAGAGATTCAACAC
                      ____________________________________________________________
consensus             TTCTTTTTTTCTCGTTTCAGACTTTGTAATGCTTCTTCCTAAGTTCTAGAGATTCAACAC