Contig 005780:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF040D07+                                                         CACAGTTGAAGTT
                      ____________________________________________________________
consensus                                                            CACAGTTGAAGTT
 
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rJMSF040D07+          CATAATAGATGCTTGGCTGCAGATAGTTGAATGTAGACGGGTGCTAAAATGGACTTATGC
                      ____________________________________________________________
consensus             CATAATAGATGCTTGGCTGCAGATAGTTGAATGTAGACGGGTGCTAAAATGGACTTATGC
 
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rJMSF040D07+          ATATGGATATTACTTACCTGAGCATGACCGTGCTAAGAGGCAATTCTTCGAGTATCTACA
                      ____________________________________________________________
consensus             ATATGGATATTACTTACCTGAGCATGACCGTGCTAAGAGGCAATTCTTCGAGTATCTACA
 
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rJMFF034B21+                 GCTGAATCTGGGTTAGAGCGGCTTCATCAATGTGCCGAGAAGGAACTCCAAAG
rJMSF040D07+          AGGTGAAGCTGAATCTGGGTTAGAGCGGCTTCATCAATGTGCCGAGAAGGAACTCCAAAG
                      ____________________________________________________________
consensus             AGGTGAAGCTGAATCTGGGTTAGAGCGGCTTCATCAATGTGCCGAGAAGGAACTCCAAAG
 
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rJMFF034B21+          ATACNTTAATGCAGATGGTCCATCAAAAGACTTCAATGAGTTCCGCACAAAGCTAGCAGG
rJMSF040D07+          ATACCTTAATGCAGATGGTCCATCAAAAGACTTCAATGAGTTCCGCACAAAGCTAGCAGG
                      ____________________________________________________________
consensus             ATACCTTAATGCAGATGGTCCATCAAAAGACTTCAATGAGTTCCGCACAAAGCTAGCAGG
 
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rJMFF034B21+          GCTAACAAGTGTCACTCGAAATTACTTTGAAAACCTGGTCCGAGCTTTAGAGAACGGTCT
rJMSF040D07+          GCTAACAAGTGTCACTCGAAATTACTTTGAAAACCTGGTCCGAGCTTTAGAGAACGGTCT
                      ____________________________________________________________
consensus             GCTAACAAGTGTCACTCGAAATTACTTTGAAAACCTGGTCCGAGCTTTAGAGAACGGTCT
 
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rJMFF034B21+          GTCAGACGTGGACCCTCGAGGTGCTTGCAGCAGGGCAACGAGTTCAAAAAACCTGGGATG
rJMSF040D07+          GTCAGACGTGGACCCTCGAGGTGCTTGCAGCAGGGCAACGAGTTCAAAAAACCTGGGATG
                      ____________________________________________________________
consensus             GTCAGACGTGGACCCTCGAGGTGCTTGCAGCAGGGCAACGAGTTCAAAAAACCTGGGATG
 
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rJMFF034B21+          CTTAAGCAGCAAAGGGAGCAGAAGCAGAAGCAGGGGAACCACATCCAGATCATCAAGCAG
rJMSF040D07+          CTTAAGCAGCAAAGGGAGCAGAAGCAGAAGCAGGGGAACCACATCCAGATCATCAAGCAG
                      ____________________________________________________________
consensus             CTTAAGCAGCAAAGGGAGCAGAAGCAGAAGCAGGGGAACCACATCCAGATCATCAAGCAG
 
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rJMFF034B21+          TTCCAAAAACATAGACGATTCTGGACACTGGTCTTGTCAATACTGCACATTTGCCAACGT
rJMSF040D07+          TTCCAAAAACATAGACGATTCTGGACACTGGTCTTGTCAATACTGCACATTTGCCAACGT
                      ____________________________________________________________
consensus             TTCCAAAAACATAGACGATTCTGGACACTGGTCTTGTCAATACTGCACATTTGCCAACGT
 
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rJMFF034B21+          TAGATCTGCTAATATTTGTCAGATGTGTCAGCAACGCCCTTGAAGCGAATTCAACTTGCA
rJMSF040D07+          TAGATCTGCTAATATTTGTCAGATGTGTCAGCAACGCCCTTGAAGCGAATTCAACTTGCA
                      ____________________________________________________________
consensus             TAGATCTGCTAATATTTGTCAGATGTGTCAGCAACGCCCTTGAAGCGAATTCAACTTGCA
 
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rJMFF034B21+          GTGAATTCTGATACCGCATCTACTGAAGACTGGGTCATCGGGGAAATGAGGTAAAAGGAG
rJMSF040D07+          GTGAATTCTGATACCGCATCTACTGAAGACTGGGTCATCGGGGAAATGAGGTAAAAGGAG
                      ____________________________________________________________
consensus             GTGAATTCTGATACCGCATCTACTGAAGACTGGGTCATCGGGGAAATGAGGTAAAAGGAG
 
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rJMFF034B21+          GATATCGGATTACCACGTTCCCTTCAAAACCCTTTCCCATCCCAGCAGAGATGCTGTACA
rJMSF040D07+          GATATCGGATTACCACGTTCCCTTCAAAACCCTTTCCCATCCCAGCAGAGATGCTGTACA
                      ____________________________________________________________
consensus             GATATCGGATTACCACGTTCCCTTCAAAACCCTTTCCCATCCCAGCAGAGATGCTGTACA
 
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rJMFF034B21+          TAGTTCAGGTTGTGTCTTGTGTGTGTTTCCTATATATAATATCCTGTAACAACATCCTTT
rJMSF040D07+          TAGTTCAGGTTGTGTCTTGTGTGTGTTTCCTATATATAATATCCTGTAACAACATCCTTT
                      ____________________________________________________________
consensus             TAGTTCAGGTTGTGTCTTGTGTGTGTTTCCTATATATAATATCCTGTAACAACATCCTTT
 
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rJMFF034B21+          CATAGAACCTCATTTTCATGTTTTATTTTATTTATATTGCTATTTAGGACGCAGGAAAAA
rJMSF040D07+          CATAGAACCTCATTTTCATGTTTTATTTTATTTATATTGCTATTTAGGACGCAGGAAAAA
                      ____________________________________________________________
consensus             CATAGAACCTCATTTTCATGTTTTATTTTATTTATATTGCTATTTAGGACGCAGGAAAAA
 
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rJMFF034B21+          TCTGCTGGCTTAAAGCTGTTGTATTGTACACTACTTCTATAGGGAGTCATAATATAACTA
rJMSF040D07+          TCTGCTGGCTTAAAGCTGTTGTATTGTACACTACTTCTATAGGGAGTCATAATATAACTA
                      ____________________________________________________________
consensus             TCTGCTGGCTTAAAGCTGTTGTATTGTACACTACTTCTATAGGGAGTCATAATATAACTA