clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF001E22 | Sequence | 344 | 010537 (3) | ref|XP_006353595.1| | 1e-43 | PREDICTED: tubulin-folding cofactor E-like [Solanum tuberosum] | 177 | 005774 (3) | ref|XP_009606625.1| | 3e-08 | PREDICTED: tubulin-folding cofactor E isoform X1 [Nicotiana tomentosiformis] |
JMSF039B24 | Sequence | 693 | 010537 (3) | ref|XP_010313057.1| | 2e-112 | PREDICTED: tubulin-folding cofactor E isoform X2 [Solanum lycopersicum] | 825 | 005774 (3) | ref|XP_009606626.1| | 3e-96 | PREDICTED: tubulin-folding cofactor E isoform X2 [Nicotiana tomentosiformis] |
JMSF049M22 | Sequence | 369 | 010537 (3) | ref|XP_010313057.1| | 1e-56 | PREDICTED: tubulin-folding cofactor E isoform X2 [Solanum lycopersicum] | 178 | 005774 (3) |
This contig is upended
. : . : . : . : . : . :
rJMSF039B24+ TGGTAACAACATCATTAAAGATGTGGAATCTGTTGATTTCGCTGAAT
____________________________________________________________
consensus TGGTAACAACATCATTAAAGATGTGGAATCTGTTGATTTCGCTGAAT
. : . : . : . : . : . :
rJMSF039B24+ TATTTTCCTAATTTGTTGGAAGTAAGACTTTCTGAGAATCCAGTGACAGATCCAGTAAAA
____________________________________________________________
consensus TATTTTCCTAATTTGTTGGAAGTAAGACTTTCTGAGAATCCAGTGACAGATCCAGTAAAA
. : . : . : . : . : . :
rJMSF039B24+ AGTGGCCTATCTCGATTTGTTTTGGTGGCACGCCTAGCAGGAGTAAAAATATTAAATGGA
____________________________________________________________
consensus AGTGGCCTATCTCGATTTGTTTTGGTGGCACGCCTAGCAGGAGTAAAAATATTAAATGGA
. : . : . : . : . : . :
rJMSF039B24+ AGTGAGATTAGTCCTAGAGAGCGGAAGGAATCTGAAATTCGGTATGTCCGATTAGTCATG
____________________________________________________________
consensus AGTGAGATTAGTCCTAGAGAGCGGAAGGAATCTGAAATTCGGTATGTCCGATTAGTCATG
. : . : . : . : . : . :
rJMSF039B24+ TCTAAATGTCATGAATATCCACAAGAAATCGACCGACTTCACCCGAGATTTGCTGAGCTA
____________________________________________________________
consensus TCTAAATGTCATGAATATCCACAAGAAATCGACCGACTTCACCCGAGATTTGCTGAGCTA
. : . : . : . : . : . :
rJMSF039B24+ AAAAGACACCATGGAATTGATGATGAAAAACCAGAGAGTGGAACAACCGGACCCCAGAAA
____________________________________________________________
consensus AAAAGACACCATGGAATTGATGATGAAAAACCAGAGAGTGGAACAACCGGACCCCAGAAA
. : . : . : . : . : . :
rJMSF039B24+ ATGGCTGCAGGACTTATATCAATTACCATGAAGTGTATTGGAGCATCAATCGGTGAAAAG
____________________________________________________________
consensus ATGGCTGCAGGACTTATATCAATTACCATGAAGTGTATTGGAGCATCAATCGGTGAAAAG
. : . : . : . : . : . :
rJMSF039B24+ CCTCCATTGACCAAAAAGTTGCCTGTGACAATCACGGTTGGCAAGCTGAAGAACCTTTGC
____________________________________________________________
consensus CCTCCATTGACCAAAAAGTTGCCTGTGACAATCACGGTTGGCAAGCTGAAGAACCTTTGC
. : . : . : . : . : . :
rJMSF001E22+ TTTCTTCAGGAAGCGGGCGCC
rJMSF039B24+ GAGAGTTTCTTCAACATAAGATCTATCAAGCCTAAATTATTTCTTCAGGAAGCGGGCGCC
____________________________________________________________
consensus GAGAGTTTCTTCAACATAAGATCTATCAAGCCTAAATTATTTCTTCAGGAAGCGGGCGCC
. : . : . : . : . : . :
rJMSF001E22+ CCATTTCCAACGNTGCTCGAGGATGATATGGCAACTNTGCTGGATGCTGGAGTGGGTAAT
rJMSF049M22+ TGCTGGAGTGGGTAAT
rJMSF039B24+ CCATTTCCAACGCTGCTCGAGGATGATATGGCAACTTTGCTGGATGCTGGAGTGGGTAAT
____________________________________________________________
consensus CCATTTCCAACGCTGCTCGAGGATGATATGGCAACTTTGCTGGATGCTGGAGTGGGTAAT
. : . : . : . : . : . :
rJMSF001E22+ GAGTCAACCATTCTTGTGGATGAAGAGTAATATAATGCTGTCCTCACAATCCAGAAAAAT
rJMSF049M22+ GAGTCAACCATTCTTGTGGATNAAGAGTAATATNATGCTGTCCTCACAA-CCAGAAAAAT
rJMSF039B24+ GAGTCAACCATTCTTGTGGATGAAGAGTAATATAATGCTGTCCTCACAA-CCAGAAAAAT
____________________________________________________________
consensus GAGTCAACCATTCTTGTGGATGAAGAGTAATATAATGCTGTCCTCACAA-CCAGAAAAAT
. : . : . : . : . : . :
rJMSF001E22+ CTTAATTTTTTTTTCCTATCGGATA
rJMSF049M22+ CNTAATTTTTTTTTCCTATCGGATATACATTATGATGTGGAACTGGATTTGTGTTTGGAA
rJMSF039B24+ CTTAATTTTTTTTTCCTATCGGATA-ACATTATGATGTGGAACTGGATTTGTGTTTGGAA
____________________________________________________________
consensus CTTAATTTTTTTTTCCTATCGGATATACATTATGATGTGGAACTGGATTTGTGTTTGGAA
. : . : . : . : . : . :
rJMSF049M22+ AATGCAGTTNTGTCGTTCAAGAATTNGACCT
rJMSF039B24+ AATGCAGTTTTGTCGTTCAAGAATTTGACCTCATGCATCATACAAGTATGTGGTTGTTGT
____________________________________________________________
consensus AATGCAGTTTTGTCGTTCAAGAATTTGACCTCATGCATCATACAAGTATGTGGTTGTTGT
. : . : . : . : . : . :
rJMSF039B24+ TTGATGAACTTATGCAATTTTATTACACAAATTATATCCATTATGGATATATATATATAT
____________________________________________________________
consensus TTGATGAACTTATGCAATTTTATTACACAAATTATATCCATTATGGATATATATATATAT