Contig 005773:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038P21Sequence705005773 (2)gb|EYU20751.1|9e-92hypothetical protein MIMGU_mgv1a010701mg [Erythranthe guttata] gb|EYU20752.1| hy857005773 (2)ref|XP_009597188.1|1e-80PREDICTED: exosome complex component RRP43 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF038P21-                                      GGGCTTGGTGCTCATTAACTAAAGACTCCCATT
                      ____________________________________________________________
consensus                                        GGGCTTGGTGCTCATTAACTAAAGACTCCCATT
 
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JMSF038P21-           TGTTTACTGGAGGGAGACTCTTTCCCTAACTCCGCTAGCAGGCCCCAAGCGCCACCTACC
                      ____________________________________________________________
consensus             TGTTTACTGGAGGGAGACTCTTTCCCTAACTCCGCTAGCAGGCCCCAAGCGCCACCTACC
 
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JMSF038P21-           CCCGCCGCCGTCCGCGCATTTGAGAGTAGCAAGCTAATTTTTCTAAGGGATACAGGAGAA
                      ____________________________________________________________
consensus             CCCGCCGCCGTCCGCGCATTTGAGAGTAGCAAGCTAATTTTTCTAAGGGATACAGGAGAA
 
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JMSF038P21-           TGGATACAGCTAATGGGTCAGGGGATTTGTCGTCACAGATGGAGCTGGACGCATTTCGAC
                      ____________________________________________________________
consensus             TGGATACAGCTAATGGGTCAGGGGATTTGTCGTCACAGATGGAGCTGGACGCATTTCGAC
 
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JMSF038P21-           GCCTTTTTCCTTTGCGCTTTCACGAGCGTTATCTGGGTGAATCTATTCGGCCCGATGGCC
                      ____________________________________________________________
consensus             GCCTTTTTCCTTTGCGCTTTCACGAGCGTTATCTGGGTGAATCTATTCGGCCCGATGGCC
 
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JMSF038P21-           GAGCACTTGGAGAAGCTAGATATACAACAGTTGTGCTTGGTAGTGTAGCATCTGCGGATG
                      ____________________________________________________________
consensus             GAGCACTTGGAGAAGCTAGATATACAACAGTTGTGCTTGGTAGTGTAGCATCTGCGGATG
 
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JMSF038P21-           GATCTGCACTGGTGAAGATTGGTTCCACTACAATGTTGGCTGCGATCAAGGTGGAAGTCA
                      ____________________________________________________________
consensus             GATCTGCACTGGTGAAGATTGGTTCCACTACAATGTTGGCTGCGATCAAGGTGGAAGTCA
 
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JMSF038P21-           TGACTCCAAGTGCGGATTCTCCAGATGAGGGATCCATAGCTGTTGAATTCCATATGCCTC
                      ____________________________________________________________
consensus             TGACTCCAAGTGCGGATTCTCCAGATGAGGGATCCATAGCTGTTGAATTCCATATGCCTC
 
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JMSF038P21-           CGATTTGTTCTTCTCTTGTTCGACCTGGCAGGCCCGCAGAGGCAGCTCCAGTCATTTCTA
rJMSF038P21+                                                     AGCTCCAGTCATTTCTA
                      ____________________________________________________________
consensus             CGATTTGTTCTTCTCTTGTTCGACCTGGCAGGCCCGCAGAGGCAGCTCCAGTCATTTCTA
 
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JMSF038P21-           AACAACTATCTGACACCATAGCTAGTTCTGGCATGATTGACTTGAAAGAACTGTGCCTGG
rJMSF038P21+          AACAACTATCTGACACCATAGCTAGTTCTGGCATGATTGACTTGAAAGAACTGTGCCTGG
                      ____________________________________________________________
consensus             AACAACTATCTGACACCATAGCTAGTTCTGGCATGATTGACTTGAAAGAACTGTGCCTGG
 
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JMSF038P21-           CCAGTGGGAAAGCTGCTTGGATGGCCTACCTGGACATATACTGCTTGGATGCTGATGGTG
rJMSF038P21+          CCAGTGGGAAAGCTGCTTGGATGGCCTACCTGGACATATACTGCTTGGATGCTGATGGTG
                      ____________________________________________________________
consensus             CCAGTGGGAAAGCTGCTTGGATGGCCTACCTGGACATATACTGCTTGGATGCTGATGGTG
 
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JMSF038P21-           CACTGTTTGATGCTGCATTACTCTCAGCGGTTGCTGCTTTTTCACATTTGGAAATTCCTG
rJMSF038P21+          CACTGTTTGATGCTGCATTACTCTCAGCGGTTGCTGCTTTTTCACATTTGGAAATTCCTG
                      ____________________________________________________________
consensus             CACTGTTTGATGCTGCATTACTCTCAGCGGTTGCTGCTTTTTCACATTTGGAAATTCCTG
 
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JMSF038P21-           TAGCTTCTTTGA                                                
rJMSF038P21+          TAGCTTCTTTGAATGATGATGGGAGAGTAGTTCTTGGCACTAAAAAGAAAAACAAAAATG
                      ____________________________________________________________
consensus             TAGCTTCTTTGAATGATGATGGGAGAGTAGTTCTTGGCACTAAAAAGAAAAACAAAAATG
 
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rJMSF038P21+          AGGTTCCAGAGCCGGAAAACGAGCCTGTCACTAAAGAAGAGAAGAGAAAACTACATCTGA
                      ____________________________________________________________
consensus             AGGTTCCAGAGCCGGAAAACGAGCCTGTCACTAAAGAAGAGAAGAGAAAACTACATCTGA
 
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rJMSF038P21+          ACAGCGTTCCATTCTCCTTGTCATGCGTACTTCACAAAAACTATATCCTAGCAGACCCTA
                      ____________________________________________________________
consensus             ACAGCGTTCCATTCTCCTTGTCATGCGTACTTCACAAAAACTATATCCTAGCAGACCCTA
 
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rJMSF038P21+          CAGCTGAGGAAGAGTCCGTAATGGAAACTGTTCTTAATGTGGTATTGGATTCGTCTTATC
                      ____________________________________________________________
consensus             CAGCTGAGGAAGAGTCCGTAATGGAAACTGTTCTTAATGTGGTATTGGATTCGTCTTATC
 
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rJMSF038P21+          AACTCGTATCACTTTACAAGCCAGGTGGACCTGCCCTTGCCAGCACTTCAGTTATCCAGG
                      ____________________________________________________________
consensus             AACTCGTATCACTTTACAAGCCAGGTGGACCTGCCCTTGCCAGCACTTCAGTTATCCAGG
 
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rJMSF038P21+          ATTGCGTTGCATTGACAAAGCAGAGAGTCAATCAACTAAAGAATATACTGAGCGAAGCTA
                      ____________________________________________________________
consensus             ATTGCGTTGCATTGACAAAGCAGAGAGTCAATCAACTAAAGAATATACTGAGCGAAGCTA
 
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rJMSF038P21+          TATCCGATATGGACGTGGACTGAAGGCACCGGTTTATCTGTCTTCTCAAAGTATCACTGC
                      ____________________________________________________________
consensus             TATCCGATATGGACGTGGACTGAAGGCACCGGTTTATCTGTCTTCTCAAAGTATCACTGC
 
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rJMSF038P21+          TTTGCCATACTATTGTTGGATCACGTTAGCTATCTTCTAGCTAGAACCGTCGTTAAGAGT
                      ____________________________________________________________
consensus             TTTGCCATACTATTGTTGGATCACGTTAGCTATCTTCTAGCTAGAACCGTCGTTAAGAGT
 
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rJMSF038P21+          GATTATCTCGATGTTGACTGCTCAGGCTGTGGGACAATGGGAGCATAAAGCATAATCTAG
                      ____________________________________________________________
consensus             GATTATCTCGATGTTGACTGCTCAGGCTGTGGGACAATGGGAGCATAAAGCATAATCTAG
 
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rJMSF038P21+          ATTTGTTGTTTAGAGATATTACTTTGTTTTTAGTCTGTTCCCTTTATTTTTCTTCCAAGA
                      ____________________________________________________________
consensus             ATTTGTTGTTTAGAGATATTACTTTGTTTTTAGTCTGTTCCCTTTATTTTTCTTCCAAGA
 
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rJMSF038P21+          GGTCAATACTAGAATATTTTGTAAGATTAGGAAATTTTGGTTGTACATGAAGAAATGGAT
                      ____________________________________________________________
consensus             GGTCAATACTAGAATATTTTGTAAGATTAGGAAATTTTGGTTGTACATGAAGAAATGGAT