Contig 005772:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009E23Sequence342005772 (7)615005760 (3)ref|XP_006359541.1|7e-26PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Solanum tuberosum]
JMSF037G02Sequence648005772 (7)ref|XP_009791877.1|8e-29PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Nicotiana sylvestris]767005760 (3)ref|XP_004242737.1|8e-37PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Solanum lycopersicum]
JMSF038N02Sequence647005772 (7)ref|XP_009791877.1|8e-29PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Nicotiana sylvestris]911005760 (3)ref|XP_008457196.1|7e-57PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Cucumis melo]
JMSF038N18Sequence663005772 (7)ref|XP_006359541.1|1e-68PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Solanum tuberosum]818005772 (7)ref|XP_009791877.1|1e-36PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Nicotiana sylvestris]
JMSF043B20Sequence524005772 (7)ref|XP_009608573.1|6e-67PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Nicotiana tomentosifo
JMSF044B20Sequence524005772 (7)ref|XP_009608573.1|6e-67PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Nicotiana tomentosifo

Alignment

This contig is upended


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JMSF044B20-                 GGCAGATCACTGGATCTATTGTTCATAGCCACTTCATAAACTCCACAATGAACA
JMSF043B20-                 GGCAGATCACTGGATCTATTGTTCATAGCCACTTCATAAACTCCACAATGAACA
JMSF038N18-                                     GTTCATAGCCACTTCATAAACTCCACAATGAACA
                      ____________________________________________________________
consensus                   GGCAGATCACTGGATCTATTGTTCATAGCCACTTCATAAACTCCACAATGAACA
 
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JMSF044B20-           CAAAAGACAGCCCAAATCAATGCAGACCTGTACAAGAACTTTGCAGGGCTATATGGAGCT
JMSF043B20-           CAAAAGACAGCCCAAATCAATGCAGACCTGTACAAGAACTTTGCAGGGCTATATGGAGCT
JMSF038N18-           CAAAAGACAGCCCAAATCAATGCAGACCTGTACAAGAACTTTGCAGGGCTATATGGAGCT
                      ____________________________________________________________
consensus             CAAAAGACAGCCCAAATCAATGCAGACCTGTACAAGAACTTTGCAGGGCTATATGGAGCT
 
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JMSF044B20-           TGCTCCCCAGAAAAAACAGCAGAGAACATCGCATCCAAATCACAAGCTAAACACAGTTTC
JMSF043B20-           TGCTCCCCAGAAAAAACAGCAGAGAACATCGCATCCAAATCACAAGCTAAACACAGTTTC
JMSF038N18-           TGCTCCCCAGAAAAAACAGCAGAGAACATCGCATCCAAATCACAAGCTAAACACAGTTTC
                      ____________________________________________________________
consensus             TGCTCCCCAGAAAAAACAGCAGAGAACATCGCATCCAAATCACAAGCTAAACACAGTTTC
 
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JMSF044B20-           ACATTTTTATTACTATCTTCTTTCGATCTTGTGGTGATACTCCTATTTTTCTGCTGGCAA
JMSF043B20-           ACATTTTTATTACTATCTTCTTTCGATCTTGTGGTGATACTCCTATTTTTCTGCTGGCAA
JMSF038N18-           ACATTTTTATTACTATCTTCTTTCGATCTTGTGGTGATACTCCTATTTTTCTGCTGGC--
                      ____________________________________________________________
consensus             ACATTTTTATTACTATCTTCTTTCGATCTTGTGGTGATACTCCTATTTTTCTGCTGGCAA
 
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JMSF044B20-           AAATATCTGTTATGCTTATCACTCAGAAAATAGTTCCTCAGTGGTGGTGTGTGCATCAAT
JMSF043B20-           AAATATCTGTTATGCTTATCACTCAGAAAATAGTTCCTCAGTGGTGGTGTGTGCATCAAT
JMSF038N18-           AAATATCTGTTATGCTTATCACTCAGAAAATAGTTCCTCAGTGGTGGTGTGTGCATCAAT
                      ____________________________________________________________
consensus             AAATATCTGTTATGCTTATCACTCAGAAAATAGTTCCTCAGTGGTGGTGTGTGCATCAAT
 
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JMSF044B20-           GCTTGCAATACAGAGTTCATAAAGCACGTATTGCCTAGATTGTTCAGGCCTCTCAATCCC
JMSF043B20-           GCTTGCAATACAGAGTTCATAAAGCACGTATTGCCTAGATTGTTCAGGCCTCTCAATCCC
JMSF038N18-           GCTTGCAATACAGAGTTCATAAAGCACGTATTGCCTAGATTGTTCAGGCCTCTCAATCCC
                      ____________________________________________________________
consensus             GCTTGCAATACAGAGTTCATAAAGCACGTATTGCCTAGATTGTTCAGGCCTCTCAATCCC
 
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JMSF044B20-           CAGGGACGGTCTGGTGACTCGGATTCGTTTCCGTTTCCGGTTTGAGTCGATAACGGCATC
JMSF043B20-           CAGGGACGGTCTGGTGACTCGGATTCGTTTCCGTTTCCGGTTTGAGTCGATAACGGCATC
JMSF038N18-           CAGGGACGGTCTGGTGACTCGGATTCGTTTCCGTTTCCGGTTTGAGTCGATAACGGCATC
                      ____________________________________________________________
consensus             CAGGGACGGTCTGGTGACTCGGATTCGTTTCCGTTTCCGGTTTGAGTCGATAACGGCATC
 
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JMSF044B20-           GAGTTTTCTACAATCAGGACTTGCTCTTTCAGATCGGGCGACCAGGGTTTGTAATCAACG
JMSF043B20-           GAGTTTTCTACAATCAGGACTTGCTCTTTCAGATCGGGCGACCAGGGTTTGTAATCAACG
JMSF038N18-           GAGTTTTCTACAATCAGGACTTGCTCTTTCAGATCGGGCGACCAGGGTTTGTAATCAACG
                      ____________________________________________________________
consensus             GAGTTTTCTACAATCAGGACTTGCTCTTTCAGATCGGGCGACCAGGGTTTGTAATCAACG
 
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JMSF044B20-           CGCCGCCGCTTTCTTAAGCTCTCCTGTGGCGGCGGCGGCTGCTGGTGGGT          
JMSF043B20-           CGCCGCCGCTTTCTTAAGCTCTCCTGTGGCGGCGGCGGCTGCTGGTGGGT          
JMSF038N18-           CGCCGCCGCTTTCTTAAGCTCTCCTGTGGCGGCGGCGGCTGCTGGTGGGTGGAT-CCGAT
rJMSF038N18+                                CCTGTGGCGGCGGCGGCTGCTGGTGGGTGGATCCCGAT
                      ____________________________________________________________
consensus             CGCCGCCGCTTTCTTAAGCTCTCCTGTGGCGGCGGCGGCTGCTGGTGGGTGGATCCCGAT
 
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JMSF038N18-           CATGGCGGCC-TCCGTTTGCGCTAGGACCACAGCCGCGTCAAAATCCAAATCATACACCT
JMSF037G02+                                                            ATCATACACCT
JMSF038N02+                                                            ATCATACACCT
rJMSF038N18+          CATGGCGGCCTTCCGTTTGCGCTAGGACCACAGCCGCGTCAAAATCCAAATCATACACCT
                      ____________________________________________________________
consensus             CATGGCGGCCTTCCGTTTGCGCTAGGACCACAGCCGCGTCAAAATCCAAATCATACACCT
 
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JMSF038N18-           GGTCCCGGCACGAGCAGCAGAAGAGCTCAGCGCGATCGACGTCAACAGAGACGTGGTGAG
JMSF037G02+           GGTCCCGGCACGAGCAGCAGAAGAGCTCAGCGCGATCGACGTCAACAGAGACGTGGTGAG
JMSF038N02+           GGTCCCGGCACGAGCAGCAGAAGAGCTCAGCGCGATCGACGTCAACAGAGACGTGGTGAG
rJMSF038N18+          GGTCCCGGCACGAGCAGCAGAAGAGCTCAGCGCGATCGACGTCAACAGAGACGTGGTGAG
                      ____________________________________________________________
consensus             GGTCCCGGCACGAGCAGCAGAAGAGCTCAGCGCGATCGACGTCAACAGAGACGTGGTGAG
 
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JMSF038N18-           ACGACTCCGCCGCGTGCGGCGGCGCGTGCA                              
JMSF037G02+           ACGACTCCGCCGCGTGCGGCGGCGCGTGCAGATGGCAGAACACAGCGGCGCAAGTGACGC
JMSF038N02+           ACGACTCCGCCGCGTGCGGCGGCGCGTGCAGATGGCAGAACACAGCGGCGCAAGTGACGC
rJMSF038N18+          ACGACTCCGCCGCGTGCGGCGGCGCGTGCAGATGGCAGAACACAGCGGCGCAAGTGACGC
                      ____________________________________________________________
consensus             ACGACTCCGCCGCGTGCGGCGGCGCGTGCAGATGGCAGAACACAGCGGCGCAAGTGACGC
 
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JMSF037G02+           AAGCGTAGAGCCGCGGCCCAGCCAGCCCGCACGCTCCGCATCTGACGACCTCATTCGTCG
JMSF038N02+           AAGCGTAGAGCCGCGGCCCAGCCAGCCCGCACGCTCCGCATCTGACGACCTCATTCGTCG
rJMSF038N18+          AAGCGTAGAGCCGCGGCCCAGCCAGCCCGCACGCTCCGCATCTGACGACCTCATTCGTCG
                      ____________________________________________________________
consensus             AAGCGTAGAGCCGCGGCCCAGCCAGCCCGCACGCTCCGCATCTGACGACCTCATTCGTCG
 
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JMSF037G02+           GCTCGCGGCGGATGGACGCCCTCCCCAGAGGCCTCACCCTCAGACACGCCCGTAGATTCT
JMSF009E23+                                                   CAGACACGCCCGTAGATTCT
JMSF038N02+           GCTCGCGGCGGATGGACGCCCTCCCCAGAGGCCTCACCCTCAGACACGCCCGTAGATTCT
rJMSF038N18+          GCTCGCGGCGGATGGACGCCCTCCCCAGAGGCCTCACCCTCAGACACGCCCGTAGATTCT
                      ____________________________________________________________
consensus             GCTCGCGGCGGATGGACGCCCTCCCCAGAGGCCTCACCCTCAGACACGCCCGTAGATTCT
 
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JMSF037G02+           GGAACGGGTTGGGCACAAATTTCGATCGGAGCATAGGCAAATGCGGACACTTAGCATTGC
JMSF009E23+           GGAACGGGTTGGGCACAAATTTCGATCGGAGCATAGGCAAATGCGGACACTTAGCATTGC
JMSF038N02+           GGAACGGGTTGGGCACAAATTTCGATCGGAGCATAGGCAAATGCGGACACTTAGCATTGC
rJMSF038N18+          GGAACGGGTTGGGCACAAATTTCGATCGGAGCATAGGCAAATGCGGACACTTAGCATTGC
                      ____________________________________________________________
consensus             GGAACGGGTTGGGCACAAATTTCGATCGGAGCATAGGCAAATGCGGACACTTAGCATTGC
 
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JMSF037G02+           TAGGGCTGCAAACCGCCAACGACTTGATTCCCGTCTGATTGCCGAACCGATGGGCATCTG
JMSF009E23+           TAGGGCTGCAAACCGCCAACGACTTGATTCCCGTCTGATTGCCGAACCGATGGGCATCTG
JMSF038N02+           TAGGGCTGCAAACCGCCAACGACTTGATTCCCGTCTGATTGCCGAACCGATGGGCATCTG
rJMSF038N18+          TAGGGCTGCAAACCGCCAACGACTTGATTCCCGTCTGATTGCCGAACCGATGGGCATCTG
                      ____________________________________________________________
consensus             TAGGGCTGCAAACCGCCAACGACTTGATTCCCGTCTGATTGCCGAACCGATGGGCATCTG
 
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JMSF037G02+           GGTCCGGATTCCCGGATTGGGTCCGATCCAGAATGGATCGCGGGATTTGATAGCTATGAT
JMSF009E23+           GGTCCGGATTCCCGGATTGGGTCCGATCCAGAATGGATCGCGGGATTTGATAGCTATGAT
JMSF038N02+           GGTCCGGATTCCCGGATTGGGTCCGATCCAGAATGGATCGCGGGATTTGATAGCTATGAT
rJMSF038N18+          GGTCCGGATTCCCGGATTGGGTCCGATCCAGAATGGATCGCGGGATTTGATAGCTATGAT
                      ____________________________________________________________
consensus             GGTCCGGATTCCCGGATTGGGTCCGATCCAGAATGGATCGCGGGATTTGATAGCTATGAT
 
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JMSF037G02+           TTCCCGAGCTAGCTGATGATGACATTGATGTGGCTGGGAATGCGAAACCCAGATCAAGTT
JMSF009E23+           TTCCCGAGCTAGCTGATGATGACATTGATGTGGCTGGGAATGCGAAACCCAGATCAAGTT
JMSF038N02+           TTCCCGAGCTAGCTGATGATGACATTGATGTGGCTGGGAATGCGAAACCCAGATCAAGTT
rJMSF038N18+          TTCCCGAGCTAGCTGATGATGACATTGATGTGGCTGGGAATGCGAAACCCAGATCAAGTT
                      ____________________________________________________________
consensus             TTCCCGAGCTAGCTGATGATGACATTGATGTGGCTGGGAATGCGAAACCCAGATCAAGTT
 
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JMSF037G02+           TATCCACCCAACTAGGTATCAGATTGACTACAAAAAGATCGAATCAAATGAATGGGAACA
JMSF009E23+           TATCCACCCAACTAGGTATCAGATTGACTACAAAAAGATCGAATCAAATGAATGGGAACA
JMSF038N02+           TATCCACCCAACTAGGTATCAGATTGACTACAAAAAGATCGAATCAAATGAATGGGAACA
rJMSF038N18+          TATCCACCCAACTAGGTATCAGATTGACTACAAAAAGATCGAATCAAATGAATGGGAACA
                      ____________________________________________________________
consensus             TATCCACCCAACTAGGTATCAGATTGACTACAAAAAGATCGAATCAAATGAATGGGAACA
 
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JMSF037G02+           CGAATAGCAACTTGATGGATTGATGGATGAATGGATCAAAGAGAGATATTTATGGCAAAC
JMSF009E23+           CGAATAGCAACTTGATGGATT                                       
JMSF038N02+           CGAATAGCAACTTGATGGATTGATGGATGAATGGATCAAAGAGAGATATTTATGGCAAAC
rJMSF038N18+          CGAATAGCAACTTGATGGATTGATGGATGAATGGATCAAAGAGAGATATTTATGGCAAAC
                      ____________________________________________________________
consensus             CGAATAGCAACTTGATGGATTGATGGATGAATGGATCAAAGAGAGATATTTATGGCAAAC
 
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JMSF037G02+           GGCTGAGTGAAACACTGAAACTCTGAAAGAATTAC                         
JMSF038N02+           GGCTGAGTGAAACACTGAAACTCTGAAAGAATTAC                         
rJMSF038N18+          GGCTGAGTGAAACACTGAAACTCTGAAAGAATTACGATACAGAAACAGAGAAGCAAAACT
                      ____________________________________________________________
consensus             GGCTGAGTGAAACACTGAAACTCTGAAAGAATTACGATACAGAAACAGAGAAGCAAAACT
 
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rJMSF038N18+          AGAAAGGGAAAGAGGGTACTGGATTTTGGATTTAATATTTATTGCTAATTACACATAATT
                      ____________________________________________________________
consensus             AGAAAGGGAAAGAGGGTACTGGATTTTGGATTTAATATTTATTGCTAATTACACATAATT