Contig 005771:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034C15Sequence495005771 (5)ref|XP_009765524.1|4e-25PREDICTED: transmembrane protein 258-like [Nicotiana sylvestris]458005771 (5)ref|XP_009765524.1|3e-25PREDICTED: transmembrane protein 258-like [Nicotiana sylvestris]
JMFS006D07Sequence465005771 (5)ref|XP_009765524.1|3e-25PREDICTED: transmembrane protein 258-like [Nicotiana sylvestris]
JMSF038N11Sequence531005771 (5)ref|XP_009765524.1|6e-25PREDICTED: transmembrane protein 258-like [Nicotiana sylvestris]474005771 (5)ref|XP_009765524.1|4e-25PREDICTED: transmembrane protein 258-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF034C15+                    TTTTTTTTTTGTCCAACAAGAAAAATGTAAAGTTTCATTGGTAGGGTTCCT
JMFS006D07+                              GTCCAACAAGAAAAATGTAAAGTTTCATTGGTAGGGTTCCT
rJMFF034C15-                                                        TTGGTAGGGTTCCT
JMSF038N11+                    TTTTTTTTTTGTCCAACAAGAAAAATGTAAAGTTTCATTGGTAGGGTTCCT
                      ____________________________________________________________
consensus                      TTTTTTTTTTGTCCAACAAGAAAAATGTAAAGTTTCATTGGTAGGGTTCCT
 
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JMFF034C15+           GGTTTAGTAGATTTATAGTTTGATGAGGATTACATATCATAGATGCTCCGCTCAAATACT
JMFS006D07+           GGTTTAGTAGATTTATAGTTTGATGAGGATTACATATCATAGATGCTCCGCTCAAATACT
rJMFF034C15-          GGTTTAGTAGATTTATAGTTTGATGAGGATTACATATCATAGATGCTCCGCTCAAATACT
JMSF038N11+           GGTTTAGTAGATTTATAGTTTGATGAGGATTACATATCATAGATGCTCCGCTCAAATACT
rJMSF038N11-                GTAGATTTATAGTTTGATGAGGATTACATATCATAGATGCTCCGCTCAAATACT
                      ____________________________________________________________
consensus             GGTTTAGTAGATTTATAGTTTGATGAGGATTACATATCATAGATGCTCCGCTCAAATACT
 
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JMFF034C15+           CAAATTAGTTCTAACGACACTGTCAAAAAGCATCACTCGCGTAGAAATTGCAAAAACAAA
JMFS006D07+           CAAATTAGTTCTAACGACACTGTCAAAAAGCATCACTCGCGTAGAAATTGCAAAAACAAA
rJMFF034C15-          CAAATTAGTTCTAACGACACTGTCAAAAAGCATCACTCGCGTAGAAATTGCAAAAACAAA
JMSF038N11+           CAAATTAGTTCTAACGACACTGTCAAAAAGCATCACTCGCGTAGAAATTGCAAAAACAAA
rJMSF038N11-          CAAATTAGTTCTAACGACACTGTCAAAAAGCATCACTCGCGTAGAAATTGCAAAAACAAA
                      ____________________________________________________________
consensus             CAAATTAGTTCTAACGACACTGTCAAAAAGCATCACTCGCGTAGAAATTGCAAAAACAAA
 
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JMFF034C15+           ATTAGGTCTAGTACGATGTTAAGTTATCAAACGTAAACACCAGAGGAAAGCAGTAAGAAC
JMFS006D07+           ATTAGGTCTAGTACGATGTTAAGTTATCAAACGTAAACACCAGAGGAAAGCAGTAAGAAC
rJMFF034C15-          ATTAGGTCTAGTACGATGTTAAGTTATCAAACGTAAACACCAGAGGAAAGCAGTAAGAAC
JMSF038N11+           ATTAGGTCTAGTACGATGTTAAGTTATCAAACGTAAACACCAGAGGAAAGCAGTAAGAAC
rJMSF038N11-          ATTAGGTCTAGTACGATGTTAAGTTATCAAACGTAAACACCAGAGGAAAGCAGTAAGAAC
                      ____________________________________________________________
consensus             ATTAGGTCTAGTACGATGTTAAGTTATCAAACGTAAACACCAGAGGAAAGCAGTAAGAAC
 
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JMFF034C15+           AAGGATCCAAAACCCAAGAATACTGATGCCACTGCACCTGTGGTGAGCTCCTTGGCAAGA
JMFS006D07+           AAGGATCCAAAACCCAAGAATACTGATGCCACTGCACCTGTGGTGAGCTCCTTGGCAAGA
rJMFF034C15-          AAGGATCCAAAACCCAAGAATACTGATGCCACTGCACCTGTGGTGAGCTCCTTGGCAAGA
JMSF038N11+           AAGGATCCAAAACCCAAGAATACTGATGCCACTGCACCTGTGGTGAGCTCCTTGGCAAGA
rJMSF038N11-          AAGGATCCAAAACCCAAGAATACTGATGCCACTGCACCTGTGGTGAGCTCCTTGGCAAGA
                      ____________________________________________________________
consensus             AAGGATCCAAAACCCAAGAATACTGATGCCACTGCACCTGTGGTGAGCTCCTTGGCAAGA
 
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JMFF034C15+           CTCAGATTCTTTCTAGAAGAAGTAGCCCCATAGATGAAGAAAAAGGCGGTCACGAGGAGA
JMFS006D07+           CTCAGATTCTTTCTAGAAGAAGTAGCCCCATAGATGAAGAAAAAGGCGGTCACGAGGAGA
rJMFF034C15-          CTCAGATTCTTTCTAGAAGAAGTAGCCCCATAGATGAAGAAAAAGGCGGTCACGAGGAGA
JMSF038N11+           CTCAGATTCTTTCTAGAAGAAGTAGCCCCATAGATGAAGAAAAAGGCGGTCACGAGGAGA
rJMSF038N11-          CTCAGATTCTTTCTAGAAGAAGTAGCCCCATAGATGAAGAAAAAGGCGGTCACGAGGAGA
                      ____________________________________________________________
consensus             CTCAGATTCTTTCTAGAAGAAGTAGCCCCATAGATGAAGAAAAAGGCGGTCACGAGGAGA
 
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JMFF034C15+           CCAACGACGAGCATGAAGAACGCTAGGGTTGGATACATCGACTCCGGCACCGGGCTCGAG
JMFS006D07+           CCAACGACGAGCATGAAGAACGCTAGGGTTGGATACATCGACTCCGGCACCGGGCTCGAG
rJMFF034C15-          CCAACGACGAGCATGAAGAACGCTAGGGTTGGATACATCGACTCCGGCACCGGGCTCGAG
JMSF038N11+           CCAACGACGAGCATGAAGAACGCTAGGGTTGGATACATCGACTCCGGCACCGGGCTCGAG
rJMSF038N11-          CCAACGACGAGCATGAAGAACGCTAGGGTTGGATACATCGACTCCGGCACCGGGCTCGAG
                      ____________________________________________________________
consensus             CCAACGACGAGCATGAAGAACGCTAGGGTTGGATACATCGACTCCGGCACCGGGCTCGAG
 
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JMFF034C15+           ATCGGCTTCGCTGATTGGGCCATTTCTGGAGATTGCAAGCTAGCGATAGATCTTTTGTCT
JMFS006D07+           ATCGGCTTCGCTGATTGGGCCATTTCTGGAGATTGCAAGCTAGCGATAGATCTTTTGTCT
rJMFF034C15-          ATCGGCTTCGCTGATTGGGCCATTTCTGGAGATTGCAAGCTAGCGATAGATCTTTTGTCT
JMSF038N11+           ATCGGCTTCGCTGATTGGGCCATTTCTGGAGATTGCAAGCTAGCGATAGATCTTTTGTCT
rJMSF038N11-          ATCGGCTTCGCTGATTGGGCCATTTCTGGAGATTGCAAGCTAGCGATAGATCTTTTGTCT
                      ____________________________________________________________
consensus             ATCGGCTTCGCTGATTGGGCCATTTCTGGAGATTGCAAGCTAGCGATAGATCTTTTGTCT
 
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JMFF034C15+           CAGACCTCACCGGCGGAAGAA                                       
JMFS006D07+           CAGA                                                        
rJMFF034C15-          CAGACCTCACCGGCGGAAGAA                                       
JMSF038N11+           CAGACCTCACCGGCGGAAGAAGACTCCTTTTACTGAGAAGTGAGAAACACCAGTCTACTC
rJMSF038N11-          CAGACCTCACCGGCGGAAGAAGACTCCTTTTACTGAGAAGTGAGAAACACCAGTCTACTC
                      ____________________________________________________________
consensus             CAGACCTCACCGGCGGAAGAAGACTCCTTTTACTGAGAAGTGAGAAACACCAGTCTACTC