Contig 005769:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005I01Sequence366005769 (3)
JMSF027H01Sequence251016794805005769 (3)gb|KDO44796.1|8e-85hypothetical protein CISIN_1g0077971mg, partial [Citrus sinensis] gb|KDO44797.1|
JMSF038L04Sequence240015816928005769 (3)ref|XP_009602219.1|1e-21PREDICTED: transcription factor PIF4 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF027H01+                                                AAAAAAGAAACTCAGGANGAGA
                      ____________________________________________________________
consensus                                                   AAAAAAGAAACTCAGGANGAGA
 
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rJMSF027H01+          AGAATCAGATCCCAGCGCGAAGAAGCTGCTGAGTTTGAATCTGGCAATGGAAACAAGTCA
                      ____________________________________________________________
consensus             AGAATCAGATCCCAGCGCGAAGAAGCTGCTGAGTTTGAATCTGGCAATGGAAACAAGTCA
 
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rJMSF027H01+          ACCCAAAAGTCTGGAACCACTCGCAGGAGTCGTGCAGCTGAGGTGCATAACCTCTCTGAA
                      ____________________________________________________________
consensus             ACCCAAAAGTCTGGAACCACTCGCAGGAGTCGTGCAGCTGAGGTGCATAACCTCTCTGAA
 
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rJMSF027H01+          AGGAGGCGACGAGATAGAATCAATGAGAAGATGAGGGCCTTGCAAGAGCTTCTCCCTCAC
                      ____________________________________________________________
consensus             AGGAGGCGACGAGATAGAATCAATGAGAAGATGAGGGCCTTGCAAGAGCTTCTCCCTCAC
 
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rJMSF027H01+          TCCAATAAGACAGATAAAGCATCAATGCTAGATGAGGCTATTGAATACTTGAAGTCCCTT
                      ____________________________________________________________
consensus             TCCAATAAGACAGATAAAGCATCAATGCTAGATGAGGCTATTGAATACTTGAAGTCCCTT
 
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rJMSF027H01+          CAAATGCAACTTCAGATGATGTGGATGGGAAGCGGAATGGCATCAATGATGTTCCCGGGT
                      ____________________________________________________________
consensus             CAAATGCAACTTCAGATGATGTGGATGGGAAGCGGAATGGCATCAATGATGTTCCCGGGT
 
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rJMSF027H01+          ATGCAACACTACATGTCACGGATGGGAATGGGAATGGTCCCGCCAGCGCTACCTAATATG
rJMSF038L04+                                        GGAATGGTCCCGCCAGCGCTACCTAATATG
                      ____________________________________________________________
consensus             ATGCAACACTACATGTCACGGATGGGAATGGGAATGGTCCCGCCAGCGCTACCTAATATG
 
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rJMSF027H01+          CATTTACCGAGGCCTCCTTTGGTTGATCATGCTGCAGCTACTATGGCTTCCACACAGAAC
rJMSF038L04+          CATTTACCGAGGCCTCCTTTGGTTGATCATGCTGCAGCTACTATGGCTTCCACACAGAAC
                      ____________________________________________________________
consensus             CATTTACCGAGGCCTCCTTTGGTTGATCATGCTGCAGCTACTATGGCTTCCACACAGAAC
 
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rJMSF027H01+          CAAGCAGCATTGTGTCAGAATTCAATGTTGAATCCTATCAACTATCAGAATCAATTGCAA
rJMSF038L04+          CAAGCAGCATTGTGTCAGAATTCAATGTTGAATCCTATCAACTATCAGAATCAATTGCAA
                      ____________________________________________________________
consensus             CAAGCAGCATTGTGTCAGAATTCAATGTTGAATCCTATCAACTATCAGAATCAATTGCAA
 
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rJMSF027H01+          AACCCCAATTTTGCAGAGCAATTTGCTAGTTACATGGGTTTCCACCCTATGCAAAATGCT
rJMSF038L04+          AACCCCAATTTTGCAGAGCAATTTGCTAGTTACATGGGTTTCCACCCTATGCAAAATGCT
                      ____________________________________________________________
consensus             AACCCCAATTTTGCAGAGCAATTTGCTAGTTACATGGGTTTCCACCCTATGCAAAATGCT
 
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rJMSF027H01+          TCCCAGGCCGTAAACATGTTTAACATGGGCTCACACGCATCTCAACCGAACTCAATGTTC
rJMSF038L04+          TCCCAGGCCGTAAACATGTTTAACATGGGCTCACACGCATCTCAACCGAACTCAATGTTC
                      ____________________________________________________________
consensus             TCCCAGGCCGTAAACATGTTTAACATGGGCTCACACGCATCTCAACCGAACTCAATGTTC
 
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rJMSF027H01+          AATCCACCTACCAATGGCAGTGGACCCTCGTCTTGATGAGCATTAGCTACCACAGAGCCA
rJMSF038L04+          AATCCACCTACCAATGGCAGTGGACCCTCGTCTTGATGAGCATTAGCTACCACAGAGCCA
                      ____________________________________________________________
consensus             AATCCACCTACCAATGGCAGTGGACCCTCGTCTTGATGAGCATTAGCTACCACAGAGCCA
 
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rJMSF027H01+          GAGTGGAATACGGGAATGTAAGCTACAGCACTTTGACATCTTAGTTTTTAACAGCATAAT
rJMSF038L04+          GAGTGGAATACGGGAATGTAAGCTACAGCACTTTGACATCTTAGTTTTTAACAGCATAAT
                      ____________________________________________________________
consensus             GAGTGGAATACGGGAATGTAAGCTACAGCACTTTGACATCTTAGTTTTTAACAGCATAAT
 
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rJMSF027H01+          AACAGAAGCAGAAAACTCGTGTGATTTCTGTTCCCTCCAGGAAACAGTAAAACACAAGAA
rJMSF038L04+          AACAGAAGCAGAAAACTCGTGTGATTTCTGTTCCCTCCAGGAAACAGTAAAACACAAGAA
                      ____________________________________________________________
consensus             AACAGAAGCAGAAAACTCGTGTGATTTCTGTTCCCTCCAGGAAACAGTAAAACACAAGAA
 
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rJMSF027H01+          TCA                                                         
rJMSF038L04+          TCACACAGTATATATCATTATTGATTAACAAGAATGATGTTATTTGTACTTTGAAATTTT
                      ____________________________________________________________
consensus             TCACACAGTATATATCATTATTGATTAACAAGAATGATGTTATTTGTACTTTGAAATTTT
 
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rJMSF005I01+                                         TATGTGGACTGGAACCCTATTATCTCCAN
rJMSF038L04+          TTGAAAAATCGAGATGCAATCAATGGTATTTTATGTGGACTGGAACCCTATTATCTCCAT
                      ____________________________________________________________
consensus             TTGAAAAATCGAGATGCAATCAATGGTATTTTATGTGGACTGGAACCCTATTATCTCCAT
 
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rJMSF005I01+          AGGAAATTAAAGCATCTTTGACTATTNTCTGGCATGGTCCCAGATGNTCNTTAAAGACTN
rJMSF038L04+          AGGAAATTAAAGCATCTTTGACTATTTTCTGGCATGGTCCCAGATGCTCATTAAAGACTA
                      ____________________________________________________________
consensus             AGGAAATTAAAGCATCTTTGACTATTTTCTGGCATGGTCCCAGATGCTCATTAAAGACTA
 
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rJMSF005I01+          CCACTGTAGGATAGGGAAAGCCAACTGCTCTCTCAAATGGATGAAAGGAACAGAGTGCAG
rJMSF038L04+          CCACTGTAGGATAGGGAAAGCCAACTGCTCTCTCAAATGGATGAAAGGAACAGAGTGCAG
                      ____________________________________________________________
consensus             CCACTGTAGGATAGGGAAAGCCAACTGCTCTCTCAAATGGATGAAAGGAACAGAGTGCAG
 
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rJMSF005I01+          TGCCTCCACCATAGGTATGACCTCGAACCAAATTCCATGACACATTCNAGATATGTCATC
rJMSF038L04+          TGCCTCCACCATAGGTATGACCTCGAACCAAATTCCATGACACATTCAAGATATGTCATC
                      ____________________________________________________________
consensus             TGCCTCCACCATAGGTATGACCTCGAACCAAATTCCATGACACATTCAAGATATGTCATC
 
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rJMSF005I01+          CAGTGCATGTCAATGAAGCAGCTGTTTCACTACACGTTATTCTTGNTTAATCTGTCATGT
rJMSF038L04+          CAGTGCATGTCAATGAAGCAGCTGTTTCACTACACGTTATTCTT-TTTAATCTGTCATGT
                      ____________________________________________________________
consensus             CAGTGCATGTCAATGAAGCAGCTGTTTCACTACACGTTATTCTTGTTTAATCTGTCATGT
 
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rJMSF005I01+          CAAGTGATTAGTGATAGGTTAATTGNTTGNTCGTCCTGTGATTCTGTGAAATATAGTGTT
rJMSF038L04+          CAAGTGATTAGTGATAGGTTAATTGTTTTATCGTCCTGTGATTCTGTGAAATATA-TGTT
                      ____________________________________________________________
consensus             CAAGTGATTAGTGATAGGTTAATTGTTTTATCGTCCTGTGATTCTGTGAAATATAGTGTT
 
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rJMSF005I01+          CNTATTACGAGTCNGATCGAGNTATGGTATATAATTC                       
rJMSF038L04+          CTTATTACGAGTCAGATCGAGTTATTGTATATAATTCTTATTCCTTTTACGGAAAGAAGA
                      ____________________________________________________________
consensus             CTTATTACGAGTCAGATCGAGTTATTGTATATAATTCTTATTCCTTTTACGGAAAGAAGA