Contig 005767:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004I11Sequence544005767 (9)ref|XP_010651161.1|5e-77PREDICTED: 60S ribosomal protein L12 [Vitis vinifera]700005767 (9)ref|XP_002281255.1|1e-82PREDICTED: 60S ribosomal protein L12 [Vitis vinifera] emb|CAN66258.1| hypothetic
JMFF019L05Sequence532005767 (9)ref|XP_010651161.1|8e-105PREDICTED: 60S ribosomal protein L12 [Vitis vinifera]681005767 (9)ref|XP_002281255.1|1e-80PREDICTED: 60S ribosomal protein L12 [Vitis vinifera] emb|CAN66258.1| hypothetic
JMFF036J05Sequence533005767 (9)ref|XP_010651161.1|7e-106PREDICTED: 60S ribosomal protein L12 [Vitis vinifera]700005767 (9)ref|XP_002281255.1|1e-80PREDICTED: 60S ribosomal protein L12 [Vitis vinifera] emb|CAN66258.1| hypothetic
JMFF047L12Sequence621005767 (9)ref|XP_002281255.1|2e-108PREDICTED: 60S ribosomal protein L12 [Vitis vinifera] emb|CAN66258.1| hypothetic572005767 (9)ref|XP_002281255.1|2e-88PREDICTED: 60S ribosomal protein L12 [Vitis vinifera] emb|CAN66258.1| hypothetic
JMSF037P06Sequence666006763 (3)emb|CAN68176.1|8e-55hypothetical protein VITISV_014635 [Vitis vinifera]545005767 (9)ref|XP_002281255.1|3e-80PREDICTED: 60S ribosomal protein L12 [Vitis vinifera] emb|CAN66258.1| hypothetic

Alignment

This contig is upended


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JMFF019L05-                TACAAAGCGCACGTTAACCCTAGCCTCGCTGCCTGCAACTCCGTCTCCGCAACAA
JMFF036J05-                 ACAAAGCGCACGTTAACCCTAGCCTCGCTGCCTGCAACTCCGTCTCCGCAACAA
JMFF047L12-              GTTACAAAGCGCACGTTAACCCTAGCCTCGCTGCCTGCAACTCCGTCTCCGCAACAA
JMFF004I11-                                                                     AA
rJMFF004I11+               TACAAAGCGCACGTTAACCCTAGCCTCGCTGCCTGCAACTCCGTCTCCGCAACAA
rJMFF019L05+                      CGCACGTTAACCCTAGCCTCGCTGCCTGCAACTCCGTCTCCGCAACAA
rJMFF036J05+                ACAAAGCGCACGTTAACCCTAGCCTCGCTGCCTGCAACTCCGTCTCCGCAACAA
                      ____________________________________________________________
consensus                GTTACAAAGCGCACGTTAACCCTAGCCTCGCTGCCTGCAACTCCGTCTCCGCAACAA
 
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JMFF019L05-           TGCCGCCGAAGTTCGATCCAACTCAGGTTGTCGAGGTCTTCGTCCGCGTCACCGGCGGCG
JMFF036J05-           TGCCGCCGAAGTTCGATCCAACTCAGGTTGTCGAGGTCTTCGTCCGCGTCACCGGCGGCG
JMFF047L12-           TGCCGCCGAAGTTCGATCCAACTCAGGTTGTCGAGGTCTTCGTCCGCGTCACCGGCGGCG
JMFF004I11-           TGCCGCCGAAGTTCGATCCAACTCAGGTTGTCGAGGTCTTCGTCCGCGTCACCGGCGGCG
rJMFF004I11+          TGCCGCCGAAGTTCGATCCAACTCAGGTTGTCGAGGTCTTCGTCCGCGTCACCGGCGGCG
rJMFF019L05+          TGCCGCCGAAGTTCGATCCAACTCAGGTTGTCGAGGTCTTCGTCCGCGTCACCGGCGGCG
rJMFF036J05+          TGCCGCCGAAGTTCGATCCAACTCAGGTTGTCGAGGTCTTCGTCCGCGTCACCGGCGGCG
                      ____________________________________________________________
consensus             TGCCGCCGAAGTTCGATCCAACTCAGGTTGTCGAGGTCTTCGTCCGCGTCACCGGCGGCG
 
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JMFF019L05-           AGGTCGGAGCCGCCAGTTCGCTCGCTCCGAAGATCGGTCCACTCGGTCTCTCCCCGAAGA
JMFF036J05-           AGGTCGGAGCCGCCAGTTCGCTCGCTCCGAAGATCGGTCCACTCGGTCTCTCCCCGAAGA
JMFF047L12-           AGGTCGGAGCCGCCATTTCGCTCGCTCCGAAGATCGGTCCACTCGGTCTCTCCCCGAAGA
JMFF004I11-           AGGTCGGAGCCGCCAGTTCGCTCGCTCCGAAGATCGGTCCACTCGGTCTCTCCCCGAAGA
rJMFF004I11+          AGGTCGGAGCCGCCAGTTCGCTCGCTCCGAAGATCGGTCCACTCGGTCTCTCCCCGAAGA
rJMFF019L05+          AGGTCGGAGCCGCCAGTTCGCTCGCTCCGAAGATCGGTCCACTCGGTCTCTCCCCGAAGA
rJMFF036J05+          AGGTCGGAGCCGCCAGTTCGCTCGCTCCGAAGATCGGTCCACTCGGTCTCTCCCCGAAGA
rJMFF047L12+                               TCGCTCCGAAGATCGGTCCACTCGGTCTCTCCCCGAAGA
rJMSF037P06+                                                                CGAAGA
                      ____________________________________________________________
consensus             AGGTCGGAGCCGCCAGTTCGCTCGCTCCGAAGATCGGTCCACTCGGTCTCTCCCCGAAGA
 
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JMFF019L05-           AGATCGGTGAGGACATCGCCAA-GGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACC
JMFF036J05-           AGATCGGTGAGGACATCGCCAA-GGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACC
JMFF047L12-           AGATCGGTGAGGACATCGCCAA-GGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACC
JMFF004I11-           AGATCGGTGAGGACATCGCCAA-GGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACC
rJMFF004I11+          AGATCGGTGAGGACATCGCCAAGGGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACC
rJMFF019L05+          AGATCGGTGAGGACATCGCCAAGGGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACC
rJMFF036J05+          AGATCGGTGAGGACATCGCCAAGGGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACC
rJMFF047L12+          AGATCGGTGAGGACATCGCCAA-GGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACC
rJMSF037P06+          AGATCGGTGAGGACATCGCCAA-GGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACC
                      ____________________________________________________________
consensus             AGATCGGTGAGGACATCGCCAA-GGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACC
 
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JMFF019L05-           GTCAAGCTCACGGTTCAGAACCGTCAGGCCAAGGTCTCCGTCGTACCCTCCGCCGCCGCT
JMFF036J05-           GTCAAGCTCACGGTTCAGAACCGTCAGGCCAAGGTCTCCGTCGTACCCTCCGCCGCCGCT
JMFF047L12-           GTCAAGCTCACGGTTCAGAACCGTCAGGCCAAGGTCTCCGTCGTACCCTCCGCCGCCGCT
JMFF004I11-           GTCAAGCTCACGGTTCAGAACCGTCAGGCCAAGGTCTCCGTCGTACCCTCCG-CGCCGCT
rJMFF004I11+          GTCAAGCTCACGGTTCAGAACCGTCAGGCCAAGGTCTCCGTCGTACCCTCCG-CGCCGCT
rJMFF019L05+          GTCAAGCTCACGGTTCAGAACCGTCAGGCCAAGGTCTCCGTCGTACCCTCCGCCGCCGCT
rJMFF036J05+          GTCAAGCTCACGGTTCAGAACCGTCAGGCCAAGGTCTCCGTCGTACCCTCCGCCGCCGCT
rJMFF047L12+          GTCAAGCTCACGGTTCAGAACCGTCAGGCCAAGGTCTCCGTCGTACCCTCCGCCGCCGCT
rJMSF037P06+          GTCAAGCTCACGGTTCAGAACCGTCAGGCCAAGGTCTCCGTCGTACCCTCCGCCGCCGCT
                      ____________________________________________________________
consensus             GTCAAGCTCACGGTTCAGAACCGTCAGGCCAAGGTCTCCGTCGTACCCTCCGCCGCCGCT
 
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JMFF019L05-           TTGGTCATCAAGGCGCTCAAGGAGCCCGAGCGCGACCGGAAGAAGACTAAGAACATTAAA
JMFF036J05-           TTGGTCATCAAGGCGCTCAAGGAGCCCGAGCGCGACCGGAAGAAGACTAAGAACATTAAA
JMFF047L12-           TTGGTCATCAAGGCGCTCAAGGAGCCCGAGCGCGACCGGAAGAAGACTAAGAACATTAAA
JMFF004I11-           TTGGTCATCAAGGCGCTCAAGGAGCCCGAGCGCGACCGGAAGAAGACTAAGAACATTAAA
rJMFF004I11+          TTGGTCATCAAGGCGCTCAAGGAGCCCGAGCGCGACCGGAAGAAGACTAAGAACATTAAA
rJMFF019L05+          TTGGTCATCAAGGCGCTCAAGGAGCCCGAGCGCGACCGGAAGAAGACTAAGAACATTAAA
rJMFF036J05+          TTGGTCATCAAGGCGCTCAAGGAGCCCGAGCGCGACCGGAAGAAGACTAAGAACATTAAA
rJMFF047L12+          TTGGTCATCAAGGCGCTCAAGGAGCCCGAGCGCGACCGGAAGAAGACTAAGAACATTAAA
rJMSF037P06+          TTGGTCATCAAGGCGCTCAAGGAGCCCGAGCGCGACCGGAAGAAGACTAAGAACATTAGA
                      ____________________________________________________________
consensus             TTGGTCATCAAGGCGCTCAAGGAGCCCGAGCGCGACCGGAAGAAGACTAAGAACATTAAA
 
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JMFF019L05-           CACAACGGGAACATCTCCCTCGATGACGTCATCGAGATCGCCAAGGTCATGCGGCCCCGC
JMFF036J05-           CACAACGGGAACATCTCCCTCGATGACGTCATCGAGATCGCCAAGGTCATGCGGCCCCGC
JMFF047L12-           CACAACGGGAACATCTCCCTCGATGACGTCATCGAGATCGCCAAGGTCATGCGGCCCCGC
JMFF004I11-           CACAACGGGAACATCTCCCTCGATGACGTCATCGAGATCGCCAAGGTCATGCGGCCCCGC
rJMFF004I11+          CACAACGGGAACATCTCCCTCGATGACGTCATCGAGATCGCCAAGGTCATGCGGCCCCGC
rJMFF019L05+          CACAACGGGAACATCTCCCTCGATGACGTCATCGAGATCGCCAAGGTCATGCGGCCCCGC
rJMFF036J05+          CACAACGGGAACATCTCCCTCGATGACGTCATCGAGATCGCCAAGGTCATGCGGCCCCGC
rJMFF047L12+          CACAACGGGAACATCTCCCTCGATGACGTCATCGAGATCGCCAAGGTCATGCGGCCCCGC
rJMSF037P06+          CACAACGGGAACATCTCCCTCGATGACGTCATCGAGATCGCCAAGGTCATGCGGCCCCGC
                      ____________________________________________________________
consensus             CACAACGGGAACATCTCCCTCGATGACGTCATCGAGATCGCCAAGGTCATGCGGCCCCGC
 
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JMFF019L05-           TCCATGGCCAAGGACTTGACTGGCAGCGTTAAGGAGATTCTCGGGACGTGTGTATCCGTC
JMFF036J05-           TCCATGGCCAAGGACTTGACTGGCAGCGTTAAGGAGATTCTCGGGACGTGTGTATCCGTC
JMFF047L12-           TCCATGGCCAAGGACTTGACTGGCAGCGTTAAGGAGATTCTCGGGACGTGTGTATCCGTC
JMFF004I11-           TCCATGGCCAAGGACTTGACTGGCAGCGTTAAGGAGATTCTCGGGACGTGTGTATCCGTC
rJMFF004I11+          TCCATGGCCAAGGACTTGACTGGCAGCGTTAAGGAGATTCTCGGGACGTGTGTATCCGTC
rJMFF019L05+          TCCATGGCCAAGGACTTGACTGGCAGCGTTAAGGAGATTCTCGGGACGTGTGTATCCGTC
rJMFF036J05+          TCCATGGCCAAGGACTTGACTGGCAGCGTTAAGGAGATTCTCGGGACGTGTGTATCCGTC
rJMFF047L12+          TCCATGGCCAAGGACTTGACTGGCAGCGTTAAGGAGATTCTCGGGACGTGTGTATCCGTC
rJMSF037P06+          TCCATGGCCAAGGACTTGACTGGCAGCGTTAAGGAGATTCTCGGGACGTGTGTATCCGTC
                      ____________________________________________________________
consensus             TCCATGGCCAAGGACTTGACTGGCAGCGTTAAGGAGATTCTCGGGACGTGTGTATCCGTC
 
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JMFF019L05-           GGGTGCACGGTAGATGGGAAGGATCCCAAGGATTTGCAGCAGGAGATTGCTGATGG    
JMFF036J05-           GGGTGCACGGTAGATGGGAAGGATCCCAAGGATTTGCAGCAGGAGATTGCTGATGGAGAG
JMFF047L12-           GGGTGCACGGTAGATGGGAAGGATCCCAAGGATTTGCAGCAGGAGATTGCTAATGGAGAG
JMFF004I11-           GGGTGCACGGTAGATGGGAAGGATCCCAAGGATTTGCAGCAGGAGATTGCTGATGGAGA 
rJMFF004I11+          GGGTGCACGGTAGATGGGAAGGATCCCAAGGATTTGCAGCAGGAGATTGCTGATGGAGAG
rJMFF019L05+          GGGTGCACGGTAGATGGGAAGGATCCCAAGGATTTGCAGCAGGAGATTGCTGATGGAGAG
rJMFF036J05+          GGGTGCACGGTAGATGGGAAGGATCCCAAGGATTTGCAGCAGGAGATTGCTGATGGAGAG
rJMFF047L12+          GGGTGCACGGTAGATGGGAAGGATCCCAAGGATTTGCAGCAGGAGATTGCTAATGGAGAG
rJMSF037P06+          GGGTGCACGGTAGATGGGAAGGATCCCAAGGATTTGCAGCAGGAGATTGCTGATGGAGAG
                      ____________________________________________________________
consensus             GGGTGCACGGTAGATGGGAAGGATCCCAAGGATTTGCAGCAGGAGATTGCTGATGGAGAG
 
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JMFF047L12-           GTGGAGATTCCTCAGGATTGAGAGAATCTTCGGTTTCAGGGGATTTTAACTCTTAGTTTT
rJMFF004I11+          GTGGAGATTCCTCAGGATTGAGAGAATCTTCGGTTTCAGGGGATTTAAACTCTTAGTTTT
rJMFF019L05+          GTGGAGATTCCTCAGGATTGAGAGAATCTTCGGTTTCAGGGGATTTAAACTCTTAGTTTT
rJMFF036J05+          GTGGAGATTCCTCAGGATTGAGAGAATCTTCGGTTTCAGGGGATTTAAACTCTTAGTTTT
rJMFF047L12+          GTGGAGATTCCTCAGGATTGAGAGAATCTTCGGTTTCAGGGGATTTAAACTCTTAGTTTT
rJMSF037P06+          GTGGAGATTCCTCAGGATTGAGAGAATCTTCGGTTTCAGGGGATTTAAACTCTTAGTTTT
                      ____________________________________________________________
consensus             GTGGAGATTCCTCAGGATTGAGAGAATCTTCGGTTTCAGGGGATTTAAACTCTTAGTTTT
 
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JMFF047L12-           CTTGAATCCCATATTATTATTTACG                                   
rJMFF004I11+          CTTGAATCCCATATTATTATTTACGAGAATTTTTGCTGGGAAAAATGTGGTTTTCTAATG
rJMFF019L05+          CTTGAATCCCATATTATTATTTACGAGAATTTTTGCTGGGAAAAATGTGGTTTTCTAATG
rJMFF036J05+          CTTGAATCCCATATTATTATTTACGAGAATTTTTGCTGGGAAAAATGTGGTTTTCTAATG
rJMFF047L12+          CTTGAATCCCATATTATTATTTACGAGAATTTTTGCTGGGAAAAATGTGGTTTTCTAATG
rJMSF037P06+          CTTGAATCCCATATTATTATTTACGAGAATTTTTGCTGGGAAAAATGTGGTTTTCTAATG
                      ____________________________________________________________
consensus             CTTGAATCCCATATTATTATTTACGAGAATTTTTGCTGGGAAAAATGTGGTTTTCTAATG
 
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rJMFF004I11+          TTAAGACTTCAGTAGGTTCTTTTTTGTTATATCGAAATGTTTTCTG              
rJMFF019L05+          TTAAGACTTCAGTAGGTTCTTTTTTGTTATATC                           
rJMFF036J05+          TTAAGACTTCAGTAGGTTCTTTTTTGTTATATCGAAATGTTTTCTG              
rJMFF047L12+          TTAAGACTTCAGTAGGTTCTTTTTTGTTATATCGAAATGTTTTCTGAGTATTGT      
rJMSF037P06+          TTAAGACTTCAGTAGGTTCTTTTTTGTTATATCGAAATGTTTTCTGAGTATTGTTATCTT
                      ____________________________________________________________
consensus             TTAAGACTTCAGTAGGTTCTTTTTTGTTATATCGAAATGTTTTCTGAGTATTGTTATCTT