Contig 005763:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037K16Sequence693012104 (2)ref|XP_006383097.1|3e-93hypothetical protein POPTR_0005s11510g [Populus trichocarpa] gb|ERP60894.1| hypo708005763 (2)gb|KJB43318.1|2e-64hypothetical protein B456_007G193900 [Gossypium raimondii]
JMSF046H07Sequence777012104 (2)ref|XP_010271558.1|340PREDICTED: uncharacterized protein LOC104607588 [Nelumbo nucifera]769005763 (2)gb|KJB43318.1|5e-66hypothetical protein B456_007G193900 [Gossypium raimondii]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+                  CCTGAGGATCATCGAGAGTGCCCGTCCTGATTTACTCATCCCTTGCATTACA
                      ____________________________________________________________
consensus                     CCTGAGGATCATCGAGAGTGCCCGTCCTGATTTACTCATCCCTTGCATTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+          ACAATCGGGGAATCTGGCCAGGACTTTCCGGGCAACCGAAACAAGAATGATATGTCCACT
rJMSF037K16+                      TCTGGCCAGGACTTTCCGGGCAACCGAAACAAGAATGATATGTCCACT
                      ____________________________________________________________
consensus             ACAATCGGGGAATCTGGCCAGGACTTTCCGGGCAACCGAAACAAGAATGATATGTCCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+          AGTAGCCCTGCTTGATGACCAAGAACCAGAGATTACCAAAGAAGCTGCAATTGCTCTCAC
rJMSF037K16+          AGTAGCCCTGCTTGATGACCAAGAACCAGAGATTACCAAAGAAGCTGCAATTGCTCTCAC
                      ____________________________________________________________
consensus             AGTAGCCCTGCTTGATGACCAAGAACCAGAGATTACCAAAGAAGCTGCAATTGCTCTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+          CAAGTTCGCCTGCAGTGACAACTATCTTCACCTGGATCACTGCAAGGCGATTATCAGCGC
rJMSF037K16+          CAAGTTCGCCTGCAGTGACAACTATCTTCACCTGGATCACTGCAAGGCGATTATCAGCGC
                      ____________________________________________________________
consensus             CAAGTTCGCCTGCAGTGACAACTATCTTCACCTGGATCACTGCAAGGCGATTATCAGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+          TGGCGGGGCGAAACACTTAGTTCAGCTTGTGTACTTTGGAGAACAGATGGTTCAGAGCTC
rJMSF037K16+          TGGCGGGGCGAAACACTTAGTTCAGCTTGTGTACTTTGGAGAACAGATGGTTCAGAGCTC
                      ____________________________________________________________
consensus             TGGCGGGGCGAAACACTTAGTTCAGCTTGTGTACTTTGGAGAACAGATGGTTCAGAGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+          TGCACTCACTCTCCTGTGTTACATTGCCCTGCACGTCCCGGATAGCGAAGAGCTTGGCCG
rJMSF037K16+          TGCACTCACTCTCCTGTGTTACATTGCCCTGCACGTCCCGGATAGCGAAGAGCTTGGCCG
                      ____________________________________________________________
consensus             TGCACTCACTCTCCTGTGTTACATTGCCCTGCACGTCCCGGATAGCGAAGAGCTTGGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+          GTCTGAAGTGCTCACAGTGCTTGAATGGGCATCAAAGCAGGGATTCCTGAACCAAGATGA
rJMSF037K16+          GTCTGAAGTGCTCACAGTGCTTGAATGGGCATCAAAGCAGGGATTCCTGAACCAAGATGA
                      ____________________________________________________________
consensus             GTCTGAAGTGCTCACAGTGCTTGAATGGGCATCAAAGCAGGGATTCCTGAACCAAGATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+          CAAAATGGCGACACTCTTGCTAGAAGCCAAACGCGGTATGGAAGTCTTTCAATCCAGAGG
rJMSF037K16+          CAAAATGGCGACACTCTTGCTAGAAGCCAAACGCGGTATGGAAGTCTTTCAATCCAGAGG
                      ____________________________________________________________
consensus             CAAAATGGCGACACTCTTGCTAGAAGCCAAACGCGGTATGGAAGTCTTTCAATCCAGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+          GCATCGGAGATGCTGAGCGACCAGATTCGAGCTCTATCAATGTGTACAACTTTTGCAATA
rJMSF037K16+          GCATCGGAGATGCTGAGCGACCAGATTCGAGCTCTATCAATGTGTACAACTTTTGCAATA
                      ____________________________________________________________
consensus             GCATCGGAGATGCTGAGCGACCAGATTCGAGCTCTATCAATGTGTACAACTTTTGCAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+          TGGTGCTTCTTGGATGACCAGAGAAACCTGCAACCATTATTCGAAGATTTGTGTACGGGT
rJMSF037K16+          TGGTGCTTCTTGGATGACCAGAGAAACCTGCAACCATTATTCGAAGATTTGTGTACGGGT
                      ____________________________________________________________
consensus             TGGTGCTTCTTGGATGACCAGAGAAACCTGCAACCATTATTCGAAGATTTGTGTACGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+          AATTGGGTAAACCTGCTTTGTGACCAAACCCGAAACCGCAATATGGTACTGCTTCTTGTC
rJMSF037K16+          AATTGGGTAAACCTGCTTTGTGACCAAACCCGAAACCGCAATATGGTACTGCTTCTTGTC
                      ____________________________________________________________
consensus             AATTGGGTAAACCTGCTTTGTGACCAAACCCGAAACCGCAATATGGTACTGCTTCTTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+          ATTTGGAGTGTACATAAGATAGGCCTCTTCAGTCTTGCCAATAATTTACTAGAGAATAGA
rJMSF037K16+          ATTTGGAGTGTACATAAGATAGGCCTCTTCAGTCTTGCCAATAATTTACTAGAGAATAGA
                      ____________________________________________________________
consensus             ATTTGGAGTGTACATAAGATAGGCCTCTTCAGTCTTGCCAATAATTTACTAGAGAATAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046H07+          GGGAAGAAGTGAAAAAAAACACTGATTACCATTGTTCCTCATTATAGTTTTGTTTT    
rJMSF037K16+          GGGAAGAAGTGAAAAAAAACACTGATTACCATTGTTCCTCATTATAGTTTTGTTTTGAAT
                      ____________________________________________________________
consensus             GGGAAGAAGTGAAAAAAAACACTGATTACCATTGTTCCTCATTATAGTTTTGTTTTGAAT