Contig 005761:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS048H09Sequence610005761 (4)ref|XP_004238065.1|4e-73PREDICTED: transcription factor bHLH74 [Solanum lycopersicum] ref|XP_010320290.1
JMSF037H02Sequence674010711 (3)783005761 (4)ref|XP_006356833.1|2e-30PREDICTED: transcription factor bHLH74-like isoform X1 [Solanum tuberosum] ref|
JMSF045D21Sequence697022234emb|CDP01006.1|1e-24unnamed protein product [Coffea canephora]793005761 (4)ref|XP_006356833.1|1e-58PREDICTED: transcription factor bHLH74-like isoform X1 [Solanum tuberosum] ref|
JMSF053G23Sequence609010711 (3)860005761 (4)ref|XP_006356833.1|4e-30PREDICTED: transcription factor bHLH74-like isoform X1 [Solanum tuberosum] ref|

Alignment

This contig is upended


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rJMSF037H02+                                                                   GCT
                      ____________________________________________________________
consensus                                                                      GCT
 
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rJMSF037H02+          ACAGATGCTAATCATATACTCTGTATATCAAGGTTAGACTATTAATTAAATCGAACTATA
                      ____________________________________________________________
consensus             ACAGATGCTAATCATATACTCTGTATATCAAGGTTAGACTATTAATTAAATCGAACTATA
 
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rJMSF037H02+          TATCTGCAATATGCAGCATATAATCTGATATTCAAATTGATGACAACCTTTTGGTCTTTC
                      ____________________________________________________________
consensus             TATCTGCAATATGCAGCATATAATCTGATATTCAAATTGATGACAACCTTTTGGTCTTTC
 
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rJMSF045D21+                    AGTTTCTGTCGATGAAACTTGCTACTGTGAATCCCGAGCTGAACTTTGAT
JMFS048H09-                     AGTTTCTGTCGATGAAACTTGCTACTGTGAATCCCGAGCTGAACTTTGAT
rJMSF053G23+                    AGTTTCTGTCGATGAAACTTGCTACTGTGAATCCCGAGCTGAACTTTGAT
rJMSF037H02+          GCTCATTTCCAGTTTCTGTCGATGAAACTTGCTACTGTGAATCCCGAGCTGAACTTTGAT
                      ____________________________________________________________
consensus             GCTCATTTCCAGTTTCTGTCGATGAAACTTGCTACTGTGAATCCCGAGCTGAACTTTGAT
 
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rJMSF045D21+          ATCGAACGAATATTATCCAAAGATATTCTTCACGCACAAGGAAACAATGGAGCTCTTCTC
JMFS048H09-           ATCGAACGAATATTATCCAAAGATATTCTTCACGCACAAGGAAACAATGGAGCTCTTCTC
rJMSF053G23+          ATCGAACGAATATTATCCAAAGATATTCTTCACGCACAAGGAAACAATGGAGCTCTTCTC
rJMSF037H02+          ATCGAACGAATATTATCCAAAGATATTCTTCACGCACAAGGAAACAATGGAGCTCTTCTC
                      ____________________________________________________________
consensus             ATCGAACGAATATTATCCAAAGATATTCTTCACGCACAAGGAAACAATGGAGCTCTTCTC
 
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rJMSF045D21+          GGACTTGGCCCGGGATTGAACTCACCACATCCTTTCCCCGGTGCTCCACTGGGAACATTC
JMFS048H09-           GGACTTGGCCCGGGATTGAACTCACCACATCCTTTCCCCGGTGCTCCACTGGGAACATTC
rJMSF053G23+          GGACTTGGCCCGGGATTGAACTCACCACATCCTTTCCCCGGTGCTCCACTGGGAACATTC
rJMSF037H02+          GGACTTGGCCCGGGATTGAACTCACCACATCCTTTCCCCGGTGCTCCACTGGGAACATTC
                      ____________________________________________________________
consensus             GGACTTGGCCCGGGATTGAACTCACCACATCCTTTCCCCGGTGCTCCACTGGGAACATTC
 
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rJMSF045D21+          AATAATGTCCCCAACGCCACGCCATTTCACTCATTGCCTCAGAATGTGTGGGAGAACGAT
JMFS048H09-           AATAATGTCCCCAACGCCACGCCATTTCACTCATTGCCTCAGAATGTGTGGGAGAACGAT
rJMSF053G23+          AATAATGTCCCCAACGCCACGCCATTTCACTCATTGCCTCAGAATGTGTGGGAGAACGAT
rJMSF037H02+          AATAATGTCCCCAACGCCACGCCATTTCACTCATTGCCTCAGAATGTGTGGGAGAACGAT
                      ____________________________________________________________
consensus             AATAATGTCCCCAACGCCACGCCATTTCACTCATTGCCTCAGAATGTGTGGGAGAACGAT
 
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rJMSF045D21+          CTCCAGAGTATTCTCCAGATGGGATTTGATTCTAACTCTTCTTTGAACAACATGGGACCA
JMFS048H09-           CTCCAGAGTATTCTCCAGATGGGATTTGATTCTAACTCTTCTTTGAACAACATGGGACCA
rJMSF053G23+          CTCCAGAGTATTCTCCAGATGGGATTTGATTCTAACTCTTCTTTGAACAACATGGGACCA
rJMSF037H02+          CTCCAGAGTATTCTCCAGATGGGATTTGATTCTAACTCTTCTTTGAACAACATGGGACCA
                      ____________________________________________________________
consensus             CTCCAGAGTATTCTCCAGATGGGATTTGATTCTAACTCTTCTTTGAACAACATGGGACCA
 
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rJMSF045D21+          AACGGTAATCGTTCATAGGACATATAGCGATATTTGTTGATCTTGTATTCACCCTCGGTT
JMFS048H09-           AACGGTAATCGTTCATAGGACATATAGCGATATTTGTTGATCTTGTATTCACCCTCGGTT
rJMSF053G23+          AACGGTAATCGTTCATAGGACATATAGCGATATTTGTTGATCTTGTATTCACCCTCGGTT
rJMSF037H02+          AACGGTAATCGTTCATAGGACATATAGCGATATTTGTTGATCTTGTATTCACCCTCGGTT
                      ____________________________________________________________
consensus             AACGGTAATCGTTCATAGGACATATAGCGATATTTGTTGATCTTGTATTCACCCTCGGTT
 
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rJMSF045D21+          CTGGCGTTTTCCCCTCCAAACATAAAGATAGATGTCTCGATCGATCGAGCTGATTAGCAG
JMFS048H09-           CTGGCGTTTTCCCCTCCAAACATAAAGATAGATGTCTCGATCGATCGAGCT         
rJMSF053G23+          CTGGCGTTTTCCCCTCCAAACATAAAGATAGATGTCTCGATCGATCGAGCTGATTAGCAG
rJMSF037H02+          CTGGCGTTTTCCCCTCCAAACATAAAGATAGATGTCTCGATCGATCGAGCTGATTAGCAG
                      ____________________________________________________________
consensus             CTGGCGTTTTCCCCTCCAAACATAAAGATAGATGTCTCGATCGATCGAGCTGATTAGCAG
 
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rJMSF045D21+          GGTGGTGAAGAATGGATTTGTAGATTTCTGGGAATGCTAGCTGCTGTCAACTAATGCCTT
rJMSF053G23+          GGTGGTGAAGAATGGATTTGTAGATTTCTGGGAATGCTAGCTGCTGTCAACTAATGCCTT
rJMSF037H02+          GGTGGTGAAGAATGGATTTGTAGATTTCTGGGAATGCTAGCTGCTGTCAACTAATGCCTT
                      ____________________________________________________________
consensus             GGTGGTGAAGAATGGATTTGTAGATTTCTGGGAATGCTAGCTGCTGTCAACTAATGCCTT
 
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rJMSF045D21+          AACTCTTCACTGCTGAATTTGTTTCTTTCCACTGGACAACAAAAAAGTAGCTATACATAA
rJMSF053G23+          AACTCTTCACTGCTGAATTTGTTTCTTTCCACTGGACAACAAAAAAGTAGCTATACATAA
rJMSF037H02+          AACTCTTCACTGCTGAATTTGTTTCTTTCCACTGGACAACAAAAAAGTAGCTATACATAA
                      ____________________________________________________________
consensus             AACTCTTCACTGCTGAATTTGTTTCTTTCCACTGGACAACAAAAAAGTAGCTATACATAA
 
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rJMSF045D21+          TTTTCAGAGATGTATAGGTTGTTTAGCTCCTAACTCTTTGTTCTTCGAATTTTAGCAGAA
rJMSF053G23+          TTTTCAGAGATGTATAGGTTGTTTAGCTCCTAACTCTTTGTTCTTCGAATTTTAGCAGAA
rJMSF037H02+          TTTTCAGAGATGTATAGGTTGTTTAGCTCCTAACTCTTTGTTCTTCGAATTTTAGCAGAA
                      ____________________________________________________________
consensus             TTTTCAGAGATGTATAGGTTGTTTAGCTCCTAACTCTTTGTTCTTCGAATTTTAGCAGAA
 
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rJMSF045D21+          GAAATGGCATTTCATATTTAAAATGGGGTTGTCTGTATGTGTT                 
rJMSF053G23+          GAAATGGCATTTCATATTTAAAATGGGGTTGTCTGTATGTGTTTAGCTTCATGC      
rJMSF037H02+          GAAATGGCATTTCATATTTAAAATGGGGTTGTCTGTATGTGTTTAGCTTCATGCGGATTT
                      ____________________________________________________________
consensus             GAAATGGCATTTCATATTTAAAATGGGGTTGTCTGTATGTGTTTAGCTTCATGCGGATTT