Contig 005760:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009E23Sequence342005772 (7)615005760 (3)ref|XP_006359541.1|7e-26PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Solanum tuberosum]
JMSF037G02Sequence648005772 (7)ref|XP_009791877.1|8e-29PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Nicotiana sylvestris]767005760 (3)ref|XP_004242737.1|8e-37PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Solanum lycopersicum]
JMSF038N02Sequence647005772 (7)ref|XP_009791877.1|8e-29PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Nicotiana sylvestris]911005760 (3)ref|XP_008457196.1|7e-57PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Cucumis melo]

Alignment

This contig is upended


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rJMSF038N02+                                                      AAAATGTCCAGAAAGA
                      ____________________________________________________________
consensus                                                         AAAATGTCCAGAAAGA
 
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rJMSF038N02+          TTGACCGCTATCTGCAGTTTCCTTTTTCCTTGGACATGGCACCTTATCTCTCTTCCTCTA
                      ____________________________________________________________
consensus             TTGACCGCTATCTGCAGTTTCCTTTTTCCTTGGACATGGCACCTTATCTCTCTTCCTCTA
 
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rJMSF038N02+          TATTAAGGAACCGGTTTGGAAACAGACTTTTCTCCTTTGACGGGGACGAAGAAGATGCTT
                      ____________________________________________________________
consensus             TATTAAGGAACCGGTTTGGAAACAGACTTTTCTCCTTTGACGGGGACGAAGAAGATGCTT
 
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rJMSF038N02+          CCAGTGAATTGTCATCAGAGTTTGAATTGTTTGCTGTCATCACACATAATGGTAAACTTG
rJMSF037G02+                       ATCAGAGTTTGAATTGTTTGCTGTCATCACACATNATGGTAAACTTG
                      ____________________________________________________________
consensus             CCAGTGAATTGTCATCAGAGTTTGAATTGTTTGCTGTCATCACACATAATGGTAAACTTG
 
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rJMSF038N02+          ATGCTGGCCATTATGTGACTTATTTGAGGTTAAGTAATCAATGGTACAAATGTGATGATG
rJMSF009E23+              TGGCCNTTATGTGACTTATTTGAGGTTAAGTAATCAATGGTACAAATGTGATGATG
rJMSF037G02+          ATGCTGGCCATTATGTGACTTATTTGAGGTTAAGTAATCAATGGTACAAATGTGATGATG
                      ____________________________________________________________
consensus             ATGCTGGCCATTATGTGACTTATTTGAGGTTAAGTAATCAATGGTACAAATGTGATGATG
 
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rJMSF038N02+          CATGGATTACGCAGGTAAGTGAAAGTATAGTGAGAGCCGCACAGGGATATATGATGTTCT
rJMSF009E23+          CATGGATTACGCAGGTAAGTGAAAGTATAGTGAGAGCCGCACAGGGATATATGATGTTCT
rJMSF037G02+          CATGGATTACGCAGGTAAGTGAAAGTATAGTGAGAGCCGCACAGGGATATATGATGTTCT
                      ____________________________________________________________
consensus             CATGGATTACGCAGGTAAGTGAAAGTATAGTGAGAGCCGCACAGGGATATATGATGTTCT
 
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rJMSF038N02+          ATGTGCAGAAAATGCTTTACTACAAGGCAAGTGAAAAACAAGAGGTCTAGCACAAGACAT
rJMSF009E23+          ATGTGCAGAAAATGCTTTACTACAAGGCAAGTGAAAAACAAGAGGTCTAGCACAAGACAT
rJMSF037G02+          ATGTGCAGAAAATGCTTTACTACAAGGCAAGTGAAAAACAAGAGGTCTAGCACAAGACAT
                      ____________________________________________________________
consensus             ATGTGCAGAAAATGCTTTACTACAAGGCAAGTGAAAAACAAGAGGTCTAGCACAAGACAT
 
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rJMSF038N02+          GCAGGAGCAGAGAATTTTGCGATAATGCACCCCTGCACTGGATAAAACTGAAATCACTGT
rJMSF009E23+          GCAGGAGCAGAGAATTTTGCGATAATGCACCCCTGCACTGGATAAAACTGAAATCACTGT
rJMSF037G02+          GCAGGAGCAGAGAATTTTGCGATAATGCACCCCTGCACTGGATAAAACTGAAATCACTGT
                      ____________________________________________________________
consensus             GCAGGAGCAGAGAATTTTGCGATAATGCACCCCTGCACTGGATAAAACTGAAATCACTGT
 
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rJMSF038N02+          TGGCGCGTAACAGAGGAGTGCTTATCAAAGCCGAGTCCTGTGAAATCGTTAGCTTTGGGC
rJMSF009E23+          TGGCGCGTAACAGAGGAGTGCTTATCAAAGCCGAGTCCTGTGAAATCGTTAGCTTTGGGC
rJMSF037G02+          TGGCGCGTAACAGAGGAGTGCTTATCAAAGCCGAGTCCTGTGAAATCGTTAGCTTTGGGC
                      ____________________________________________________________
consensus             TGGCGCGTAACAGAGGAGTGCTTATCAAAGCCGAGTCCTGTGAAATCGTTAGCTTTGGGC
 
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rJMSF038N02+          ACGACCACATATGGTGAAAGACTAAAGCTTTTCTTTCTGTTTCTTGGCAGTATCGGATGG
rJMSF009E23+          ACGNCCACATATGGTGAAAGACTAAAGCTTTTCTTTCTGTTTCTTGGCAGTATCGGATGG
rJMSF037G02+          ACGACCACATATGGTGAAAGACTAAAGCTTTTCTTTCTGTTTCTTGGCAGTATCGGATGG
                      ____________________________________________________________
consensus             ACGACCACATATGGTGAAAGACTAAAGCTTTTCTTTCTGTTTCTTGGCAGTATCGGATGG
 
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rJMSF038N02+          TGATGGCTTATTCTCGGCTGGAGTCCAATGCAAAACCTGAATTTTCAAGGTCAAACTCCC
rJMSF009E23+          TGATGGCTTATTNTCGGCTGGAGTCCAATGCAAAACCTGAATTTTCAAGGTCAAACTCCC
rJMSF037G02+          TGATGGCTTATTCTCGGCTGGAGTCCAATGCAAAACCTGAATTTTCAAGGTCAAACTCCC
                      ____________________________________________________________
consensus             TGATGGCTTATTCTCGGCTGGAGTCCAATGCAAAACCTGAATTTTCAAGGTCAAACTCCC
 
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rJMSF038N02+          TAACCTCTGGGAAATTTTGATGAGAAGAGCTGAAGAAATACTGATTCCTTGCATAGAAAC
rJMSF009E23+          TAACCTCTGGGAAATTTTGANGAGAAGAGCTGAAGAAATACTGATTCCTTGCATAGAAAC
rJMSF037G02+          TAACCTCTGGGAAATTTTGATGAGAAGAGCTGAAGAAATACTGATTCCTTGCATAGAAAC
                      ____________________________________________________________
consensus             TAACCTCTGGGAAATTTTGATGAGAAGAGCTGAAGAAATACTGATTCCTTGCATAGAAAC
 
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rJMSF038N02+          AATGCAGGGAACTTGATTTGATTCCTTTTTAATTCATTTGTCACCCCCCAACATTTAAAA
rJMSF009E23+          AATGCAGGGAACTTGATTTGATTCCTTTTTAATTCATTTGTCNCCCCCCAACATTTAAAA
rJMSF037G02+          AATGCAGGGAACTTGATTTGATTCCTTTTTAATTCATTTGTCACCCCCCAACATTTAAAA
                      ____________________________________________________________
consensus             AATGCAGGGAACTTGATTTGATTCCTTTTTAATTCATTTGTCACCCCCCAACATTTAAAA
 
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rJMSF038N02+          AGAGGGGGGAAAATACAAAAAGGAAAAGGGTAACACCTGAAAGAAACCCTTCTAGTTCCT
rJMSF009E23+          AGAGGGGGGAAAATACAAAAAGGAAAAGGGTAACACCTGAAAGAAACCCTTCTAGTTCCT
rJMSF037G02+          AGAGGGGGGAAAATACAAAAAGGAAAAGGGTAACACCTGAAAGAAACCCTTCTAGTTCCT
                      ____________________________________________________________
consensus             AGAGGGGGGAAAATACAAAAAGGAAAAGGGTAACACCTGAAAGAAACCCTTCTAGTTCCT
 
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rJMSF038N02+          CCCTCATGCATTCATTCATACATGGCTGACTAAAGATATACTTTTTAGTTGCATTGTTGG
rJMSF009E23+          CCCTCATGCATTCATTCAT                                         
rJMSF037G02+          CCCTCATGCATTCATTCATACATGGCTGACTAAAGATATACTTTTTAGTTGCATTGTTGG
                      ____________________________________________________________
consensus             CCCTCATGCATTCATTCATACATGGCTGACTAAAGATATACTTTTTAGTTGCATTGTTGG
 
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rJMSF038N02+          TTTTCTCCCCATCATGAAATCAGGATT-CAGTGTGCTTGCTGGGANCTTGTGGTGT    
rJMSF037G02+          TTTTCTCCCCATCATGAAATCAGGATTCCAGTGTGCTTGCTGGGACCTTGTGGTGTGAAT
                      ____________________________________________________________
consensus             TTTTCTCCCCATCATGAAATCAGGATTCCAGTGTGCTTGCTGGGACCTTGTGGTGTGAAT