Contig 005760:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009E23Sequence342005772 (7)615005760 (3)ref|XP_006359541.1|7e-26PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Solanum tuberosum]
JMSF037G02Sequence648005772 (7)ref|XP_009791877.1|8e-29PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Nicotiana sylvestris]767005760 (3)ref|XP_004242737.1|8e-37PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Solanum lycopersicum]
JMSF038N02Sequence647005772 (7)ref|XP_009791877.1|8e-29PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Nicotiana sylvestris]911005760 (3)ref|XP_008457196.1|7e-57PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Cucumis melo]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038N02+ AAAATGTCCAGAAAGA
                      ____________________________________________________________
consensus AAAATGTCCAGAAAGA
 
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rJMSF038N02+ TTGACCGCTATCTGCAGTTTCCTTTTTCCTTGGACATGGCACCTTATCTCTCTTCCTCTA
                      ____________________________________________________________
consensus TTGACCGCTATCTGCAGTTTCCTTTTTCCTTGGACATGGCACCTTATCTCTCTTCCTCTA
 
. : . : . : . : . : . :
rJMSF038N02+ TATTAAGGAACCGGTTTGGAAACAGACTTTTCTCCTTTGACGGGGACGAAGAAGATGCTT
                      ____________________________________________________________
consensus TATTAAGGAACCGGTTTGGAAACAGACTTTTCTCCTTTGACGGGGACGAAGAAGATGCTT
 
. : . : . : . : . : . :
rJMSF038N02+ CCAGTGAATTGTCATCAGAGTTTGAATTGTTTGCTGTCATCACACATAATGGTAAACTTG
rJMSF037G02+ ATCAGAGTTTGAATTGTTTGCTGTCATCACACATNATGGTAAACTTG
                      ____________________________________________________________
consensus CCAGTGAATTGTCATCAGAGTTTGAATTGTTTGCTGTCATCACACATAATGGTAAACTTG
 
. : . : . : . : . : . :
rJMSF038N02+ ATGCTGGCCATTATGTGACTTATTTGAGGTTAAGTAATCAATGGTACAAATGTGATGATG
rJMSF009E23+ TGGCCNTTATGTGACTTATTTGAGGTTAAGTAATCAATGGTACAAATGTGATGATG
rJMSF037G02+ ATGCTGGCCATTATGTGACTTATTTGAGGTTAAGTAATCAATGGTACAAATGTGATGATG
                      ____________________________________________________________
consensus ATGCTGGCCATTATGTGACTTATTTGAGGTTAAGTAATCAATGGTACAAATGTGATGATG
 
. : . : . : . : . : . :
rJMSF038N02+ CATGGATTACGCAGGTAAGTGAAAGTATAGTGAGAGCCGCACAGGGATATATGATGTTCT
rJMSF009E23+ CATGGATTACGCAGGTAAGTGAAAGTATAGTGAGAGCCGCACAGGGATATATGATGTTCT
rJMSF037G02+ CATGGATTACGCAGGTAAGTGAAAGTATAGTGAGAGCCGCACAGGGATATATGATGTTCT
                      ____________________________________________________________
consensus CATGGATTACGCAGGTAAGTGAAAGTATAGTGAGAGCCGCACAGGGATATATGATGTTCT
 
. : . : . : . : . : . :
rJMSF038N02+ ATGTGCAGAAAATGCTTTACTACAAGGCAAGTGAAAAACAAGAGGTCTAGCACAAGACAT
rJMSF009E23+ ATGTGCAGAAAATGCTTTACTACAAGGCAAGTGAAAAACAAGAGGTCTAGCACAAGACAT
rJMSF037G02+ ATGTGCAGAAAATGCTTTACTACAAGGCAAGTGAAAAACAAGAGGTCTAGCACAAGACAT
                      ____________________________________________________________
consensus ATGTGCAGAAAATGCTTTACTACAAGGCAAGTGAAAAACAAGAGGTCTAGCACAAGACAT
 
. : . : . : . : . : . :
rJMSF038N02+ GCAGGAGCAGAGAATTTTGCGATAATGCACCCCTGCACTGGATAAAACTGAAATCACTGT
rJMSF009E23+ GCAGGAGCAGAGAATTTTGCGATAATGCACCCCTGCACTGGATAAAACTGAAATCACTGT
rJMSF037G02+ GCAGGAGCAGAGAATTTTGCGATAATGCACCCCTGCACTGGATAAAACTGAAATCACTGT
                      ____________________________________________________________
consensus GCAGGAGCAGAGAATTTTGCGATAATGCACCCCTGCACTGGATAAAACTGAAATCACTGT
 
. : . : . : . : . : . :
rJMSF038N02+ TGGCGCGTAACAGAGGAGTGCTTATCAAAGCCGAGTCCTGTGAAATCGTTAGCTTTGGGC
rJMSF009E23+ TGGCGCGTAACAGAGGAGTGCTTATCAAAGCCGAGTCCTGTGAAATCGTTAGCTTTGGGC
rJMSF037G02+ TGGCGCGTAACAGAGGAGTGCTTATCAAAGCCGAGTCCTGTGAAATCGTTAGCTTTGGGC
                      ____________________________________________________________
consensus TGGCGCGTAACAGAGGAGTGCTTATCAAAGCCGAGTCCTGTGAAATCGTTAGCTTTGGGC
 
. : . : . : . : . : . :
rJMSF038N02+ ACGACCACATATGGTGAAAGACTAAAGCTTTTCTTTCTGTTTCTTGGCAGTATCGGATGG
rJMSF009E23+ ACGNCCACATATGGTGAAAGACTAAAGCTTTTCTTTCTGTTTCTTGGCAGTATCGGATGG
rJMSF037G02+ ACGACCACATATGGTGAAAGACTAAAGCTTTTCTTTCTGTTTCTTGGCAGTATCGGATGG
                      ____________________________________________________________
consensus ACGACCACATATGGTGAAAGACTAAAGCTTTTCTTTCTGTTTCTTGGCAGTATCGGATGG
 
. : . : . : . : . : . :
rJMSF038N02+ TGATGGCTTATTCTCGGCTGGAGTCCAATGCAAAACCTGAATTTTCAAGGTCAAACTCCC
rJMSF009E23+ TGATGGCTTATTNTCGGCTGGAGTCCAATGCAAAACCTGAATTTTCAAGGTCAAACTCCC
rJMSF037G02+ TGATGGCTTATTCTCGGCTGGAGTCCAATGCAAAACCTGAATTTTCAAGGTCAAACTCCC
                      ____________________________________________________________
consensus TGATGGCTTATTCTCGGCTGGAGTCCAATGCAAAACCTGAATTTTCAAGGTCAAACTCCC
 
. : . : . : . : . : . :
rJMSF038N02+ TAACCTCTGGGAAATTTTGATGAGAAGAGCTGAAGAAATACTGATTCCTTGCATAGAAAC
rJMSF009E23+ TAACCTCTGGGAAATTTTGANGAGAAGAGCTGAAGAAATACTGATTCCTTGCATAGAAAC
rJMSF037G02+ TAACCTCTGGGAAATTTTGATGAGAAGAGCTGAAGAAATACTGATTCCTTGCATAGAAAC
                      ____________________________________________________________
consensus TAACCTCTGGGAAATTTTGATGAGAAGAGCTGAAGAAATACTGATTCCTTGCATAGAAAC
 
. : . : . : . : . : . :
rJMSF038N02+ AATGCAGGGAACTTGATTTGATTCCTTTTTAATTCATTTGTCACCCCCCAACATTTAAAA
rJMSF009E23+ AATGCAGGGAACTTGATTTGATTCCTTTTTAATTCATTTGTCNCCCCCCAACATTTAAAA
rJMSF037G02+ AATGCAGGGAACTTGATTTGATTCCTTTTTAATTCATTTGTCACCCCCCAACATTTAAAA
                      ____________________________________________________________
consensus AATGCAGGGAACTTGATTTGATTCCTTTTTAATTCATTTGTCACCCCCCAACATTTAAAA
 
. : . : . : . : . : . :
rJMSF038N02+ AGAGGGGGGAAAATACAAAAAGGAAAAGGGTAACACCTGAAAGAAACCCTTCTAGTTCCT
rJMSF009E23+ AGAGGGGGGAAAATACAAAAAGGAAAAGGGTAACACCTGAAAGAAACCCTTCTAGTTCCT
rJMSF037G02+ AGAGGGGGGAAAATACAAAAAGGAAAAGGGTAACACCTGAAAGAAACCCTTCTAGTTCCT
                      ____________________________________________________________
consensus AGAGGGGGGAAAATACAAAAAGGAAAAGGGTAACACCTGAAAGAAACCCTTCTAGTTCCT
 
. : . : . : . : . : . :
rJMSF038N02+ CCCTCATGCATTCATTCATACATGGCTGACTAAAGATATACTTTTTAGTTGCATTGTTGG
rJMSF009E23+ CCCTCATGCATTCATTCAT
rJMSF037G02+ CCCTCATGCATTCATTCATACATGGCTGACTAAAGATATACTTTTTAGTTGCATTGTTGG
                      ____________________________________________________________
consensus CCCTCATGCATTCATTCATACATGGCTGACTAAAGATATACTTTTTAGTTGCATTGTTGG
 
. : . : . : . : . : . :
rJMSF038N02+ TTTTCTCCCCATCATGAAATCAGGATT-CAGTGTGCTTGCTGGGANCTTGTGGTGT
rJMSF037G02+ TTTTCTCCCCATCATGAAATCAGGATTCCAGTGTGCTTGCTGGGACCTTGTGGTGTGAAT
                      ____________________________________________________________
consensus TTTTCTCCCCATCATGAAATCAGGATTCCAGTGTGCTTGCTGGGACCTTGTGGTGTGAAT