clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF017L11 | Sequence | 499 | 005758 (7) | ref|XP_006343115.1| | 4e-64 | PREDICTED: protein SYS1 homolog isoform X1 [Solanum tuberosum] | 777 | 005758 (7) | ref|XP_006343116.1| | 3e-82 | PREDICTED: protein SYS1 homolog isoform X2 [Solanum tuberosum] |
JMSF037A23 | Sequence | 686 | 005758 (7) | ref|XP_006343116.1| | 4e-89 | PREDICTED: protein SYS1 homolog isoform X2 [Solanum tuberosum] | 718 | 005758 (7) | ref|XP_006343116.1| | 3e-68 | PREDICTED: protein SYS1 homolog isoform X2 [Solanum tuberosum] |
JMSF038A23 | Sequence | 839 | 005758 (7) | ref|XP_006343116.1| | 8e-85 | PREDICTED: protein SYS1 homolog isoform X2 [Solanum tuberosum] | |||||
JMSF048H20 | Sequence | 686 | 005758 (7) | ref|XP_006343116.1| | 4e-89 | PREDICTED: protein SYS1 homolog isoform X2 [Solanum tuberosum] | 709 | 005758 (7) | ref|XP_006343116.1| | 4e-69 | PREDICTED: protein SYS1 homolog isoform X2 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF037A23- GG
JMSF017L11- GG
JMSF048H20- GG
____________________________________________________________
consensus GG
. : . : . : . : . : . :
JMSF037A23- TGGAAGGCTTCTAAAATTCACATTTCCATTAGCTTCTTCAATTCTCTGTTAGGGTTTCCG
JMSF017L11- TGGAAGGCTTCTAAAATTCACATTTCCATTAGCTTCTTCAATTCTCTGTTAGGGTTTCCG
JMSF048H20- TGGAAGGCTTCTAAAATTCACATTTCCATTAGCTTCTTCAATTCTCTGTTAGGGTTTCCG
____________________________________________________________
consensus TGGAAGGCTTCTAAAATTCACATTTCCATTAGCTTCTTCAATTCTCTGTTAGGGTTTCCG
. : . : . : . : . : . :
JMSF037A23- TTTCATGTGATCTCAATTTCCAATTTCGATTCAATTTTGTGTAGAACTAGGTTTCCTAAT
JMSF017L11- TTTCATGTGATCTCAATTTCCAATTTCGATTCAATTTTGTGTAGAACTAGGTTTCCTAAT
JMSF048H20- TTTCATGTGATCTCAATTTCCAATTTCGATTCAATTTTGTGTAGAACTAGGTTTCCTAAT
____________________________________________________________
consensus TTTCATGTGATCTCAATTTCCAATTTCGATTCAATTTTGTGTAGAACTAGGTTTCCTAAT
. : . : . : . : . : . :
JMSF037A23- ATTTAGGGGATAATTTTTTGAGTTGTTGAGTAGAGATGTTCTATGGA-TCGGTGGTGTGG
JMSF017L11- ATTTAGGGGATAATTTTTTGAGTTGTTGAGTAGAGATGTTCTATGGA-TCGGTGGTGTGG
JMSF048H20- ATTTAGGGGATAATTTTTTGAGTTGTTGAGTAGAGATGTTCTATGGA-TCGGTGGTGTGG
rJMSF017L11+ TGTGG
rJMSF038A23+ TTTTTTGAGTTGTTGAGTAGAGATGTTCTATGGATTCGGTGGTGTGG
____________________________________________________________
consensus ATTTAGGGGATAATTTTTTGAGTTGTTGAGTAGAGATGTTCTATGGA-TCGGTGGTGTGG
. : . : . : . : . : . :
JMSF037A23- GATCCTTGGCTCATTGTTGCACAAATCGTGTGCCTTCAGTGCCTCTACTACTTGATTCTG
JMSF017L11- GATCCTTGGCTCATTGTTGCACAAATCGTGTGCCTTCAGTGCCTCTACTACTTGATTCTG
JMSF048H20- GATCCTTGGCTCATTGTTGCACAAATCGTGTGCCTTCAGTGCCTCTACTACTTGATTCTG
rJMSF048H20+ TG
rJMSF017L11+ GATNCNTGGCTCATTGNTGCACAAATCGTGTGCCTTCAGTGCCTCTACTACTTGATTCTG
rJMSF038A23+ GATCCTTGGCTCATTGTTGCACAAATCGTGTGCCTTCAGTGCCTCTACTACTTGATTCTG
____________________________________________________________
consensus GATCCTTGGCTCATTGTTGCACAAATCGTGTGCCTTCAGTGCCTCTACTACTTGATTCTG
. : . : . : . : . : . :
JMSF037A23- GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
JMSF017L11- GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
JMSF048H20- GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
rJMSF048H20+ GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
rJMSF017L11+ GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
rJMSF038A23+ GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
rJMSF037A23+ GATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
____________________________________________________________
consensus GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
. : . : . : . : . : . :
JMSF037A23- TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
JMSF017L11- TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
JMSF048H20- TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
rJMSF048H20+ TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
rJMSF017L11+ TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
rJMSF038A23+ TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
rJMSF037A23+ TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
____________________________________________________________
consensus TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
. : . : . : . : . : . :
JMSF037A23- ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
JMSF017L11- ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
JMSF048H20- ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
rJMSF048H20+ ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
rJMSF017L11+ ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
rJMSF038A23+ ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
rJMSF037A23+ ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
____________________________________________________________
consensus ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
. : . : . : . : . : . :
JMSF037A23- TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
JMSF017L11- TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
JMSF048H20- TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
rJMSF048H20+ TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
rJMSF017L11+ TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
rJMSF038A23+ TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
rJMSF037A23+ TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
____________________________________________________________
consensus TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
. : . : . : . : . : . :
JMSF037A23- GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
JMSF017L11- GGTTGGCCTTCCTCATTA
JMSF048H20- GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
rJMSF048H20+ GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
rJMSF017L11+ GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
rJMSF038A23+ GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
rJMSF037A23+ GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
____________________________________________________________
consensus GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
. : . : . : . : . : . :
JMSF037A23- TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
JMSF048H20- TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
rJMSF048H20+ TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
rJMSF017L11+ TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
rJMSF038A23+ TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
rJMSF037A23+ TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
____________________________________________________________
consensus TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
. : . : . : . : . : . :
JMSF037A23- CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
JMSF048H20- CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
rJMSF048H20+ CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
rJMSF017L11+ CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
rJMSF038A23+ CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
rJMSF037A23+ CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
____________________________________________________________
consensus CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
. : . : . : . : . : . :
JMSF037A23- GTTTGTGCTGGCAGCTTTTGTTTCC
JMSF048H20- GTTTGTGCTGGCAGCTTTTGTTTCC
rJMSF048H20+ GTTTGTGCTGGCAGCTTTTGTTTCCAATGGAGATGATCCTGCATGAAGCTTGTGAAATGT
rJMSF017L11+ GTTTGTGCTGGCAGCTTTTGTTTCCAATGGAGATGATCCTGCATGAAGCTTGTGAAATGT
rJMSF038A23+ GTTTGTGCTGGCAGCTTTTGTTTCCAATGGAGATGATCCTGCATGAAGCTTGTGAAATGT
rJMSF037A23+ GTTTGTGCTGGCAGCTTTTGTTTCCAATGGAGATGATCCTGCATGAAGCTTGTGAAATGT
____________________________________________________________
consensus GTTTGTGCTGGCAGCTTTTGTTTCCAATGGAGATGATCCTGCATGAAGCTTGTGAAATGT
. : . : . : . : . : . :
rJMSF048H20+ TTTGCAGCTTTTGTACATGATATGTTTTCCACACTGGAAGGCTGTGTCAAAGCATAACAC
rJMSF017L11+ TTTGCAGCTTTTGTACATGATATGTTTTCCACACTGGAAGGCTGTGTCAAAGCATAACAC
rJMSF038A23+ TTTGCAGCTTTTGTACATGATATGTTTTCCACACTGGAAGGCTGTGTCAAAGCATAACAC
rJMSF037A23+ TTTGCAGCTTTTGTACATGATATGTTTTCCACACTGGAAGGCTGTGTCAAAGCATAACAC
____________________________________________________________
consensus TTTGCAGCTTTTGTACATGATATGTTTTCCACACTGGAAGGCTGTGTCAAAGCATAACAC
. : . : . : . : . : . :
rJMSF048H20+ ACACACTTGGTTAAAGACAAGGAAAAAGAAAGTGCGTGACGAAGTAGAACTTAGACATTT
rJMSF017L11+ ACACACTTGGTTAAAGACAAGGAAAAAGAAAGTGCGTGACGAAGTAGAACTTAGACATTT
rJMSF038A23+ ACACACTTGGTTAAAGACAAGGAAAAAGAAAGTGCGTGACGAAGTAGAACTTAGACATTT
rJMSF037A23+ ACACACTTGGTTAAAGACAAGGAAAAAGAAAGTGCGTGACGAAGTAGAACTTAGACATTT
____________________________________________________________
consensus ACACACTTGGTTAAAGACAAGGAAAAAGAAAGTGCGTGACGAAGTAGAACTTAGACATTT
. : . : . : . : . : . :
rJMSF048H20+ GATGAATACAGTTAGAGAATGTTGGGAAAGGGTGGATAGATTTCAAGTACTTAACGATTT
rJMSF017L11+ GATGAATACAGTTAGAGAATGTTGGGAAAGGGTGGATAGATTTCAAGTACTTAACGATTT
rJMSF038A23+ GATGAATACAGTTAGAGAATGTTGGGAAAGGGTGGATAGATTTCAAGTACTTAACGATTT
rJMSF037A23+ GATGAATACAGTTAGAGAATGTTGGGAAAGGGTGGATAGATTTCAAGTACTTAACGATTT
____________________________________________________________
consensus GATGAATACAGTTAGAGAATGTTGGGAAAGGGTGGATAGATTTCAAGTACTTAACGATTT
. : . : . : . : . : . :
rJMSF048H20+ TTTTGATGCCTTGCTGCAAGTTGGAGTTATGTGTTGTAAACTCAAAT
rJMSF017L11+ TTTTGATGCCTTGCTGCAAGTTGGAGTTATGTGTTGTAAACTCAAAT
rJMSF038A23+ TTTTGATGCCTTGCTGCAAGTTGGAGTTATGTGTTGTAAACTCAAATTGGCAATTGCCCT
rJMSF037A23+ TTTTGATGCCTTGCTGCAAGTTGGAGTTATGTGTTGTAAACTCAAATTGGCAATTGCCCT
____________________________________________________________
consensus TTTTGATGCCTTGCTGCAAGTTGGAGTTATGTGTTGTAAACTCAAATTGGCAATTGCCCT