Contig 005758:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017L11Sequence499005758 (7)ref|XP_006343115.1|4e-64PREDICTED: protein SYS1 homolog isoform X1 [Solanum tuberosum]777005758 (7)ref|XP_006343116.1|3e-82PREDICTED: protein SYS1 homolog isoform X2 [Solanum tuberosum]
JMSF037A23Sequence686005758 (7)ref|XP_006343116.1|4e-89PREDICTED: protein SYS1 homolog isoform X2 [Solanum tuberosum]718005758 (7)ref|XP_006343116.1|3e-68PREDICTED: protein SYS1 homolog isoform X2 [Solanum tuberosum]
JMSF038A23Sequence839005758 (7)ref|XP_006343116.1|8e-85PREDICTED: protein SYS1 homolog isoform X2 [Solanum tuberosum]
JMSF048H20Sequence686005758 (7)ref|XP_006343116.1|4e-89PREDICTED: protein SYS1 homolog isoform X2 [Solanum tuberosum]709005758 (7)ref|XP_006343116.1|4e-69PREDICTED: protein SYS1 homolog isoform X2 [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF037A23- GG
JMSF017L11- GG
JMSF048H20- GG
                      ____________________________________________________________
consensus GG
 
. : . : . : . : . : . :
JMSF037A23- TGGAAGGCTTCTAAAATTCACATTTCCATTAGCTTCTTCAATTCTCTGTTAGGGTTTCCG
JMSF017L11- TGGAAGGCTTCTAAAATTCACATTTCCATTAGCTTCTTCAATTCTCTGTTAGGGTTTCCG
JMSF048H20- TGGAAGGCTTCTAAAATTCACATTTCCATTAGCTTCTTCAATTCTCTGTTAGGGTTTCCG
                      ____________________________________________________________
consensus TGGAAGGCTTCTAAAATTCACATTTCCATTAGCTTCTTCAATTCTCTGTTAGGGTTTCCG
 
. : . : . : . : . : . :
JMSF037A23- TTTCATGTGATCTCAATTTCCAATTTCGATTCAATTTTGTGTAGAACTAGGTTTCCTAAT
JMSF017L11- TTTCATGTGATCTCAATTTCCAATTTCGATTCAATTTTGTGTAGAACTAGGTTTCCTAAT
JMSF048H20- TTTCATGTGATCTCAATTTCCAATTTCGATTCAATTTTGTGTAGAACTAGGTTTCCTAAT
                      ____________________________________________________________
consensus TTTCATGTGATCTCAATTTCCAATTTCGATTCAATTTTGTGTAGAACTAGGTTTCCTAAT
 
. : . : . : . : . : . :
JMSF037A23- ATTTAGGGGATAATTTTTTGAGTTGTTGAGTAGAGATGTTCTATGGA-TCGGTGGTGTGG
JMSF017L11- ATTTAGGGGATAATTTTTTGAGTTGTTGAGTAGAGATGTTCTATGGA-TCGGTGGTGTGG
JMSF048H20- ATTTAGGGGATAATTTTTTGAGTTGTTGAGTAGAGATGTTCTATGGA-TCGGTGGTGTGG
rJMSF017L11+ TGTGG
rJMSF038A23+ TTTTTTGAGTTGTTGAGTAGAGATGTTCTATGGATTCGGTGGTGTGG
                      ____________________________________________________________
consensus ATTTAGGGGATAATTTTTTGAGTTGTTGAGTAGAGATGTTCTATGGA-TCGGTGGTGTGG
 
. : . : . : . : . : . :
JMSF037A23- GATCCTTGGCTCATTGTTGCACAAATCGTGTGCCTTCAGTGCCTCTACTACTTGATTCTG
JMSF017L11- GATCCTTGGCTCATTGTTGCACAAATCGTGTGCCTTCAGTGCCTCTACTACTTGATTCTG
JMSF048H20- GATCCTTGGCTCATTGTTGCACAAATCGTGTGCCTTCAGTGCCTCTACTACTTGATTCTG
rJMSF048H20+ TG
rJMSF017L11+ GATNCNTGGCTCATTGNTGCACAAATCGTGTGCCTTCAGTGCCTCTACTACTTGATTCTG
rJMSF038A23+ GATCCTTGGCTCATTGTTGCACAAATCGTGTGCCTTCAGTGCCTCTACTACTTGATTCTG
                      ____________________________________________________________
consensus GATCCTTGGCTCATTGTTGCACAAATCGTGTGCCTTCAGTGCCTCTACTACTTGATTCTG
 
. : . : . : . : . : . :
JMSF037A23- GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
JMSF017L11- GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
JMSF048H20- GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
rJMSF048H20+ GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
rJMSF017L11+ GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
rJMSF038A23+ GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
rJMSF037A23+ GATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
                      ____________________________________________________________
consensus GGGATATTCATGGGCGTTCTAGTCGGAACTCGAGTCTCCCGAATGAGCCTTGTTTATTTC
 
. : . : . : . : . : . :
JMSF037A23- TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
JMSF017L11- TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
JMSF048H20- TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
rJMSF048H20+ TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
rJMSF017L11+ TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
rJMSF038A23+ TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
rJMSF037A23+ TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
                      ____________________________________________________________
consensus TTTGATTACGCCAGTATTACTGCCGCCACTGTCACCGGGTGGTGTGTCATTGCTTCGTTT
 
. : . : . : . : . : . :
JMSF037A23- ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
JMSF017L11- ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
JMSF048H20- ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
rJMSF048H20+ ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
rJMSF017L11+ ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
rJMSF038A23+ ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
rJMSF037A23+ ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
                      ____________________________________________________________
consensus ATTCTAAGCTCAATTGTGGGGGCTGGCTTCTTAGTCTATCTGATTGAGAGAGCAAAGAAG
 
. : . : . : . : . : . :
JMSF037A23- TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
JMSF017L11- TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
JMSF048H20- TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
rJMSF048H20+ TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
rJMSF017L11+ TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
rJMSF038A23+ TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
rJMSF037A23+ TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
                      ____________________________________________________________
consensus TGCTTGGATTTTTCTGCCACCTTATACATCCTTCATCTTTTTATATGCATTGTGTATGGA
 
. : . : . : . : . : . :
JMSF037A23- GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
JMSF017L11- GGTTGGCCTTCCTCATTA
JMSF048H20- GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
rJMSF048H20+ GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
rJMSF017L11+ GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
rJMSF038A23+ GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
rJMSF037A23+ GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
                      ____________________________________________________________
consensus GGTTGGCCTTCCTCATTAGCATGGTGGGTTGTGAATGTTACTGGGTTTGCAATAATGGCC
 
. : . : . : . : . : . :
JMSF037A23- TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
JMSF048H20- TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
rJMSF048H20+ TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
rJMSF017L11+ TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
rJMSF038A23+ TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
rJMSF037A23+ TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
                      ____________________________________________________________
consensus TTGTTAGGTGAATACCTGTGCATAAAGCGTGAATTGCGAGAAATTCCAATAGCAAGATAC
 
. : . : . : . : . : . :
JMSF037A23- CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
JMSF048H20- CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
rJMSF048H20+ CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
rJMSF017L11+ CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
rJMSF038A23+ CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
rJMSF037A23+ CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
                      ____________________________________________________________
consensus CGTCCAAATGTTTGATTCCATAGGTGTTGACTCACAGGCAATGAACAAATTACGTGTTTA
 
. : . : . : . : . : . :
JMSF037A23- GTTTGTGCTGGCAGCTTTTGTTTCC
JMSF048H20- GTTTGTGCTGGCAGCTTTTGTTTCC
rJMSF048H20+ GTTTGTGCTGGCAGCTTTTGTTTCCAATGGAGATGATCCTGCATGAAGCTTGTGAAATGT
rJMSF017L11+ GTTTGTGCTGGCAGCTTTTGTTTCCAATGGAGATGATCCTGCATGAAGCTTGTGAAATGT
rJMSF038A23+ GTTTGTGCTGGCAGCTTTTGTTTCCAATGGAGATGATCCTGCATGAAGCTTGTGAAATGT
rJMSF037A23+ GTTTGTGCTGGCAGCTTTTGTTTCCAATGGAGATGATCCTGCATGAAGCTTGTGAAATGT
                      ____________________________________________________________
consensus GTTTGTGCTGGCAGCTTTTGTTTCCAATGGAGATGATCCTGCATGAAGCTTGTGAAATGT
 
. : . : . : . : . : . :
rJMSF048H20+ TTTGCAGCTTTTGTACATGATATGTTTTCCACACTGGAAGGCTGTGTCAAAGCATAACAC
rJMSF017L11+ TTTGCAGCTTTTGTACATGATATGTTTTCCACACTGGAAGGCTGTGTCAAAGCATAACAC
rJMSF038A23+ TTTGCAGCTTTTGTACATGATATGTTTTCCACACTGGAAGGCTGTGTCAAAGCATAACAC
rJMSF037A23+ TTTGCAGCTTTTGTACATGATATGTTTTCCACACTGGAAGGCTGTGTCAAAGCATAACAC
                      ____________________________________________________________
consensus TTTGCAGCTTTTGTACATGATATGTTTTCCACACTGGAAGGCTGTGTCAAAGCATAACAC
 
. : . : . : . : . : . :
rJMSF048H20+ ACACACTTGGTTAAAGACAAGGAAAAAGAAAGTGCGTGACGAAGTAGAACTTAGACATTT
rJMSF017L11+ ACACACTTGGTTAAAGACAAGGAAAAAGAAAGTGCGTGACGAAGTAGAACTTAGACATTT
rJMSF038A23+ ACACACTTGGTTAAAGACAAGGAAAAAGAAAGTGCGTGACGAAGTAGAACTTAGACATTT
rJMSF037A23+ ACACACTTGGTTAAAGACAAGGAAAAAGAAAGTGCGTGACGAAGTAGAACTTAGACATTT
                      ____________________________________________________________
consensus ACACACTTGGTTAAAGACAAGGAAAAAGAAAGTGCGTGACGAAGTAGAACTTAGACATTT
 
. : . : . : . : . : . :
rJMSF048H20+ GATGAATACAGTTAGAGAATGTTGGGAAAGGGTGGATAGATTTCAAGTACTTAACGATTT
rJMSF017L11+ GATGAATACAGTTAGAGAATGTTGGGAAAGGGTGGATAGATTTCAAGTACTTAACGATTT
rJMSF038A23+ GATGAATACAGTTAGAGAATGTTGGGAAAGGGTGGATAGATTTCAAGTACTTAACGATTT
rJMSF037A23+ GATGAATACAGTTAGAGAATGTTGGGAAAGGGTGGATAGATTTCAAGTACTTAACGATTT
                      ____________________________________________________________
consensus GATGAATACAGTTAGAGAATGTTGGGAAAGGGTGGATAGATTTCAAGTACTTAACGATTT
 
. : . : . : . : . : . :
rJMSF048H20+ TTTTGATGCCTTGCTGCAAGTTGGAGTTATGTGTTGTAAACTCAAAT
rJMSF017L11+ TTTTGATGCCTTGCTGCAAGTTGGAGTTATGTGTTGTAAACTCAAAT
rJMSF038A23+ TTTTGATGCCTTGCTGCAAGTTGGAGTTATGTGTTGTAAACTCAAATTGGCAATTGCCCT
rJMSF037A23+ TTTTGATGCCTTGCTGCAAGTTGGAGTTATGTGTTGTAAACTCAAATTGGCAATTGCCCT
                      ____________________________________________________________
consensus TTTTGATGCCTTGCTGCAAGTTGGAGTTATGTGTTGTAAACTCAAATTGGCAATTGCCCT