Contig 005750:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004A20Sequence282005750 (3)
JMSF035P03Sequence632005037 (6)gb|KHM99576.1|3e-36hypothetical protein glysoja_006419 [Glycine soja]669005750 (3)emb|CBI20385.3|2e-10unnamed protein product [Vitis vinifera]
JMSF049E14Sequence715005037 (6)ref|XP_002528769.1|2e-36conserved hypothetical protein [Ricinus communis] gb|EEF33591.1| conserved hypot690005750 (3)emb|CBI20385.3|2e-10unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF049E14+                          GCCCCAGGTTCAGAAGCAAGGTATACTGTGTTGGAGGCAAATAA
rJMSF035P03+                                                                 AATAA
                      ____________________________________________________________
consensus                             GCCCCAGGTTCAGAAGCAAGGTATACTGTGTTGGAGGCAAATAA
 
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rJMSF049E14+          GTAGAAAGAAACCCTGCCAACGCCTGCTAAATGGGGATTACAGTAGCTGCAATGATAAGA
rJMSF035P03+          GTAGAAAGAAACCCTGCCAACGCCTGCTAAATGGGGATTACAGTAGCTGCAATGATAAGA
                      ____________________________________________________________
consensus             GTAGAAAGAAACCCTGCCAACGCCTGCTAAATGGGGATTACAGTAGCTGCAATGATAAGA
 
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rJMSF049E14+          AAGAATTGGAGAATAAATACAAGAAATCAGTGCTGCCTAAGGCTGTTGAAGTTGCAAGGG
rJMSF035P03+          AAGAATTGGAGAATAAATACAAGAAATCAGTGCTGCCTAAGGCTGTTGAAGTTGCAAGGG
                      ____________________________________________________________
consensus             AAGAATTGGAGAATAAATACAAGAAATCAGTGCTGCCTAAGGCTGTTGAAGTTGCAAGGG
 
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rJMSF049E14+          AAATAATGAATACAGATCCAGAAAATAATAATACTAAGCAGCAGCAGCCTCAGGAGTTTT
rJMSF035P03+          AAATAATGAATACAGATCCAGAAAATAATAATACTAAGCAGCAGCAGCCTCAGGAGTTTT
                      ____________________________________________________________
consensus             AAATAATGAATACAGATCCAGAAAATAATAATACTAAGCAGCAGCAGCCTCAGGAGTTTT
 
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rJMSF049E14+          GGAAAGGTCTGAGTGAAGTGTGGGCAGGGTTGCTGGTGTATGCCTCCAGCCATTGTAGAG
rJMSF035P03+          GGAAAGGTCTGAGTGAAGTGTGGGCAGGGTTGCTGGTGTATGCCTCCAGCCATTGTAGAG
                      ____________________________________________________________
consensus             GGAAAGGTCTGAGTGAAGTGTGGGCAGGGTTGCTGGTGTATGCCTCCAGCCATTGTAGAG
 
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rJMSF049E14+          AAGATGTTTACTACCTCAAAAAAGGTGGACAATTTTATACATTTGTTCGCCTTTTGATGG
rJMSF035P03+          AAGATGTTTACTACCTCAAAAAAGGTGGACAATTTTATACATTTGTTCGCCTTTTGATGG
                      ____________________________________________________________
consensus             AAGATGTTTACTACCTCAAAAAAGGTGGACAATTTTATACATTTGTTCGCCTTTTGATGG
 
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rJMSF049E14+          CTCATTATGGGCTACAAGAAATCCTCGAAGGCGAAAAACATTCATTTCCTGAACTCAGCT
rJMSF035P03+          CTCATTATGGGCTACAAGAAATCCTCGAAGGCGAAAAACATTCATTTCCTGAACTCAGCT
                      ____________________________________________________________
consensus             CTCATTATGGGCTACAAGAAATCCTCGAAGGCGAAAAACATTCATTTCCTGAACTCAGCT
 
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rJMSF049E14+          TCTTCCTGAATGCTAAAATTGGTAAACCAAATTAAAATGGTGTATCTGAAGTGGTTAGTA
rJMSF004A20+              CCTGAATGCTAAAATTGGTAAACCAAATTAAAATGGTGTATCTGAAGTGGTTAGTA
rJMSF035P03+          TCTTCCTGAATGCTAAAATTGGTAAACCAAATTAAAATGGTGTATCTGAAGTGGTTAGTA
                      ____________________________________________________________
consensus             TCTTCCTGAATGCTAAAATTGGTAAACCAAATTAAAATGGTGTATCTGAAGTGGTTAGTA
 
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rJMSF049E14+          TGTAATATAATGAATTAGTACGTAACAAGTCAAAATGTGATGAATTGAAGTGGTTAGTAG
rJMSF004A20+          TGTAATATAATGAATTAGTACGTAACAAGTCAAAATGTGATGAATTGAAGTGGTTAGTAG
rJMSF035P03+          TGTAATATAATGAATTAGTACGTAACAAGTCAAAATGTGATGAATTGAAGTGGTTAGTAG
                      ____________________________________________________________
consensus             TGTAATATAATGAATTAGTACGTAACAAGTCAAAATGTGATGAATTGAAGTGGTTAGTAG
 
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rJMSF049E14+          TGGGATTTGAAGTGCATTCATGTGTTAGGTTTATCGATTAATTTCATTTGTGTGCAGTGC
rJMSF004A20+          TGGGATTTGAAGTGCATTCATGTGTTAGGTTTATCGATTAATTTCATTTGTGTGCAGTGC
rJMSF035P03+          TGGGATTTGAAGTGCATTCATGTGTTAGGTTTATCGATTAATTTCATTTGTGTGCAGTGC
                      ____________________________________________________________
consensus             TGGGATTTGAAGTGCATTCATGTGTTAGGTTTATCGATTAATTTCATTTGTGTGCAGTGC
 
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rJMSF049E14+          ATGTTTGTTAAAATTAGTGACATTGCATATTGGTCACTATAAATAGTAGATTTCATAGTT
rJMSF004A20+          ATGTTTGTTAAAATTAGTGACATTGCATATTGGTCACTATAAATAGTAGATTTCATAGTT
rJMSF035P03+          ATGTTTGTTAAAATTAGTGACATTGCATATTGGTCACTATAAATAGTAGATTTCATAGTT
                      ____________________________________________________________
consensus             ATGTTTGTTAAAATTAGTGACATTGCATATTGGTCACTATAAATAGTAGATTTCATAGTT
 
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rJMSF049E14+          TTCATTTCATATATGTAAGATAATGC                                  
rJMSF004A20+          TTCATTTCATATATGTAAGATAATGC                                  
rJMSF035P03+          TTCATTTCATATATGTAAGATAATGCATGAGTGTATGAAAGAGTGTGTGTATTAAGAAGT
                      ____________________________________________________________
consensus             TTCATTTCATATATGTAAGATAATGCATGAGTGTATGAAAGAGTGTGTGTATTAAGAAGT