| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001P03 | Sequence | 319 | 005749 (4) | ref|XP_010316268.1| | 4e-48 | PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Solanum l | 772 | 001343 (5) | ref|XP_009607573.1| | 7e-100 | PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana tomentosiformis] |
| JMSF010D20 | Sequence | 278 | 005749 (4) | ||||||||
| JMSF035N08 | Sequence | 660 | 005749 (4) | ref|XP_006338501.1| | 2e-74 | PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Sola | 730 | 005749 (4) | ref|XP_010316268.1| | 2e-108 | PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Solanum l |
This contig is upended
. : . : . : . : . : . :
JMSF010D20- G
____________________________________________________________
consensus G
. : . : . : . : . : . :
JMSF010D20- GAGAGTAGTTGATGGCCACCCAAAATAACCAAACGAAGCTCTACTCCCATTCCCACTCTC
JMSF035N08- GTAGTTGATGGCCACCCAAAATAACCAAACGAAGCTCTACTCCCATTCCCACTCTC
____________________________________________________________
consensus GAGAGTAGTTGATGGCCACCCAAAATAACCAAACGAAGCTCTACTCCCATTCCCACTCTC
. : . : . : . : . : . :
JMSF010D20- CATTGCAATGGACGCTCTGCTCGCGGCTTCTCATCTCTCCCACCTTAAACTCAAACCCCA
JMSF035N08- CATTGCAATGGACGCTCTGCTCGCGGCTTCTCATCTCTCCCACCTTAAACTCAAACCCCA
____________________________________________________________
consensus CATTGCAATGGACGCTCTGCTCGCGGCTTCTCATCTCTCCCACCTTAAACTCAAACCCCA
. : . : . : . : . : . :
JMSF010D20- ACTTCCCACTCTCTCTCACCCTCCTCCACCAACTTCTTTGCCCTTCCGCCTCCGCCAATC
JMSF035N08- ACTTCCCACTCTCTCTCACCCTCCTCCACCAACTTCTTTGCCCTTCCGCCTCCGCCAATC
____________________________________________________________
consensus ACTTCCCACTCTCTCTCACCCTCCTCCACCAACTTCTTTGCCCTTCCGCCTCCGCCAATC
. : . : . : . : . : . :
JMSF010D20- CCGCCAAAACCTCCTTCTTTCCGCCGCCCTTCAGACCCCCCAACAAGAAGCGGAGGAGGG
JMSF035N08- CCGCCAAAACCTCCTTCTTTCCGCCGCCCTTCAGACCCCCCAACAAGAAGCGGAGGAGGG
____________________________________________________________
consensus CCGCCAAAACCTCCTTCTTTCCGCCGCCCTTCAGACCCCCCAACAAGAAGCGGAGGAGGG
. : . : . : . : . : . :
JMSF010D20- ATTAGCTCCGCCGCGATTCGAGGACTACGACGAAGAT
JMSF035N08- ATTAGCTCCGCCGCGATTCGAGGACTACGACGAAGATGAAACTTACGGCGAGGTTAACAA
____________________________________________________________
consensus ATTAGCTCCGCCGCGATTCGAGGACTACGACGAAGATGAAACTTACGGCGAGGTTAACAA
. : . : . : . : . : . :
JMSF035N08- GATCATCGGCAGCAGGGCCACCGAGGACGGAAAGGGAATGGAGTACCTGATAGAGTGGAA
____________________________________________________________
consensus GATCATCGGCAGCAGGGCCACCGAGGACGGAAAGGGAATGGAGTACCTGATAGAGTGGAA
. : . : . : . : . : . :
JMSF035N08- AGACGACCATTCCCCGACCTGGGTCCCGTCCGACTACATTGCCAAGGACGTCGTCGCCGA
____________________________________________________________
consensus AGACGACCATTCCCCGACCTGGGTCCCGTCCGACTACATTGCCAAGGACGTCGTCGCCGA
. : . : . : . : . : . :
JMSF035N08- GTACGAGACCCCGTGGTGGACGGCCGCCAGGAAGGCCGACGAATCCGCTCTCCGGAAGCT
____________________________________________________________
consensus GTACGAGACCCCGTGGTGGACGGCCGCCAGGAAGGCCGACGAATCCGCTCTCCGGAAGCT
. : . : . : . : . : . :
JMSF035N08- CGTCGAGGCCGGCGACGGGAGGGACGTGGACGCCGTCGACGAGGACGGCCGGACGGCTCT
____________________________________________________________
consensus CGTCGAGGCCGGCGACGGGAGGGACGTGGACGCCGTCGACGAGGACGGCCGGACGGCTCT
. : . : . : . : . : . :
JMSF035N08- GCTCTTCGTTTCCGGGCTGGGCTCGGAGGAGTGCGTCAAGCTATTAGC-GGAAGCGGGCG
JMSF001P03+ TCGGAGGAGTGCGTCAAGCTATTAGCNGAAAGCGGGCG
rJMSF035N08+ AAGCGGGCG
____________________________________________________________
consensus GCTCTTCGTTTCCGGGCTGGGCTCGGAGGAGTGCGTCAAGCTATTAGCNGGAAGCGGGCG
. : . : . : . : . : . :
JMSF035N08- CGGAGATCAATTACCGGGACAAGCGCGGCGGCTTGACGCCGCTCCACATGGCCGCCGGCT
JMSF001P03+ CGGAGATCAATTACCGGGACAAGCGCGGCGGCTTGACGCCGCTCCACATGGCCGCCGGCT
rJMSF035N08+ CGGAGATCAATTACCGGGACAAGCGCGGCGGCTTGACGCCGCTCCACATGGCCGCCGGCT
____________________________________________________________
consensus CGGAGATCAATTACCGGGACAAGCGCGGCGGCTTGACGCCGCTCCACATGGCCGCCGGCT
. : . : . : . : . : . :
JMSF035N08- ATGT
JMSF001P03+ ATGTCCGACCCGGCGTGGCGAAGCTGCTGATCGAGCTCGGAGCGGATCCCGAGGCGGAGG
rJMSF035N08+ ATGTCCGACCCGGCGTGGCGAAGCTGCTGATCGAGCTCGGAGCGGATCCCGAGGCGGAGG
____________________________________________________________
consensus ATGTCCGACCCGGCGTGGCGAAGCTGCTGATCGAGCTCGGAGCGGATCCCGAGGCGGAGG
. : . : . : . : . : . :
JMSF001P03+ ACGACAGAGGGCAGACGCCTCTGGACTTGGCAAGGATGATTCTGAAGCAAACTCCGAAGG
rJMSF035N08+ ACGACAGAGGGCAGACGCCTCTGGACTTGGCAAGGATGATTCTGAAGCAAACTCCGAAGG
____________________________________________________________
consensus ACGACAGAGGGCAGACGCCTCTGGACTTGGCAAGGATGATTCTGAAGCAAACTCCGAAGG
. : . : . : . : . : . :
JMSF001P03+ GAAACCCGATGCAATTCGCACGAAGAGTAGGGTTGGAGAATGTAATTAGGGTTCTAGAAG
rJMSF035N08+ GAAACCCGATGCAATTCGCACGAAGAGTAGGGTTGGAGAATGTAATTAGGGTTCTAGAAG
____________________________________________________________
consensus GAAACCCGATGCAATTCGCACGAAGAGTAGGGTTGGAGAATGTAATTAGGGTTCTAGAAG
. : . : . : . : . : . :
JMSF001P03+ ACGCCATTTTTGAGTTCTCTGAAGTGCAGGAGATCC
rJMSF035N08+ ACGCCATTTTTGAGTTCTCTGAAGTGCAGGAGATCCTGGAGAAGAGAGGCAAGGGCGAGA
____________________________________________________________
consensus ACGCCATTTTTGAGTTCTCTGAAGTGCAGGAGATCCTGGAGAAGAGAGGCAAGGGCGAGA
. : . : . : . : . : . :
rJMSF035N08+ ACGTTGAGTATTTGGTGAAATGGAAAGATGGAGAGGACAACGAATGGGTGAAGGGTTGGC
____________________________________________________________
consensus ACGTTGAGTATTTGGTGAAATGGAAAGATGGAGAGGACAACGAATGGGTGAAGGGTTGGC
. : . : . : . : . : . :
rJMSF035N08+ TGGTAGCCGAGGATTTGGTGCGCGATTTCGAGGCCGGGCTGGAGTACGCAGTGGCGGAGT
____________________________________________________________
consensus TGGTAGCCGAGGATTTGGTGCGCGATTTCGAGGCCGGGCTGGAGTACGCAGTGGCGGAGT
. : . : . : . : . : . :
rJMSF035N08+ GTGTGTTGGAGAGAAGGGAAGGGGAGAGTGGGAAAATGGAGTACTTGGTGAAGTGGTCAG
____________________________________________________________
consensus GTGTGTTGGAGAGAAGGGAAGGGGAGAGTGGGAAAATGGAGTACTTGGTGAAGTGGTCAG
. : . : . : . : . : . :
rJMSF035N08+ ACATTGAGGAGGCAACATGGGAGCCTGAGGAAAATGTTGATCCCACCTTAATACACGAGT
____________________________________________________________
consensus ACATTGAGGAGGCAACATGGGAGCCTGAGGAAAATGTTGATCCCACCTTAATACACGAGT
. : . : . : . : . : . :
rJMSF035N08+ TTGAAAATGATGGTAAAAAGTTGTGAGTGGAGCTGTTATTGGGAAGCCAGTGTTTTACTA
____________________________________________________________
consensus TTGAAAATGATGGTAAAAAGTTGTGAGTGGAGCTGTTATTGGGAAGCCAGTGTTTTACTA
. : . : . : . : . : . :
rJMSF035N08+ CATCCCTGGGTAATATTATGCTGCACTTCTCTGTCCCTTTGGGCCTATAAATTTTTAACT
____________________________________________________________
consensus CATCCCTGGGTAATATTATGCTGCACTTCTCTGTCCCTTTGGGCCTATAAATTTTTAACT
. : . : . : . : . : . :
rJMSF035N08+ TTTTTTTTCTTAATTCAGAAAATGAGTGCTTTGTCTTGACAAGATGTATTCCACAATCTT
____________________________________________________________
consensus TTTTTTTTCTTAATTCAGAAAATGAGTGCTTTGTCTTGACAAGATGTATTCCACAATCTT