| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF030J20 | Sequence | 640 | 005744 (5) | gb|KDO84262.1| | 2e-04 | hypothetical protein CISIN_1g021151mg [Citrus sinensis] | 766 | 005744 (5) | ref|XP_011074459.1| | 5e-97 | PREDICTED: LOW QUALITY PROTEIN: probable inactive heme oxygenase 2, chloroplast |
| JMSF035D12 | Sequence | 663 | 005744 (5) | emb|CDP01329.1| | 5e-13 | unnamed protein product [Coffea canephora] | 680 | 005744 (5) | ref|XP_011074459.1| | 3e-87 | PREDICTED: LOW QUALITY PROTEIN: probable inactive heme oxygenase 2, chloroplast |
| JMSF044H03 | Sequence | 803 | 005744 (5) | emb|CDP01329.1| | 6e-42 | unnamed protein product [Coffea canephora] | 751 | 020510 | ref|XP_009617475.1| | 5e-18 | PREDICTED: thioredoxin-like protein CXXS1 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF030J20- GCGGATTAGCAACAATGGCTTGCTACTCTTGTGCTGCGGT
JMSF035D12- GGATTAGCAACAATGGCTTGCTACTCTTGTGCTGCGGT
JMSF044H03+ AACAATGGCTTGCTACTCTTGTGCTGCGGT
____________________________________________________________
consensus GCGGATTAGCAACAATGGCTTGCTACTCTTGTGCTGCGGT
. : . : . : . : . : . :
JMSF030J20- AATAGGAGCAAACCCCACGCCGATAAAATCTTCAAATTTCCAAA-TTTTCACTCCCAACG
JMSF035D12- AATAGGAGCAAACCCCACGCCGATAAAATCTTCAAATTTCCAAA-TTTTCACTCCCAACG
JMSF044H03+ AATAGGAGCAAACCCCACGCCGATAAAATCTTCAAATTTCCAAATTTTTCACTCCCAACG
____________________________________________________________
consensus AATAGGAGCAAACCCCACGCCGATAAAATCTTCAAATTTCCAAA-TTTTCACTCCCAACG
. : . : . : . : . : . :
JMSF030J20- ATAGTCTTTCACTCCCAATTATCCCAACTATCAAGAAAATAATTCTCAGAACCAACAGAC
JMSF035D12- ATAGTCTTTCACTCCCAATTATCCCAACTATCAAGAAAATAATTCTCAGAACCAACAGAC
JMSF044H03+ ATAGTCTTTCACTCCCAATTATCCCAACTATCAAGAAAATAATTCTCAGAACCAACAGAC
____________________________________________________________
consensus ATAGTCTTTCACTCCCAATTATCCCAACTATCAAGAAAATAATTCTCAGAACCAACAGAC
. : . : . : . : . : . :
JMSF030J20- CCCTTTCAGTCCTCCATTGTTCAAGCTCCAACTTTTCCTCAGCAACACTTTCACAGTCAG
JMSF035D12- CCCTTTCAGTCCTCCATTGTTCAAGCTCCAACTTTTCCTCAGCAACACTTTCACAGTCAG
JMSF044H03+ CCCTTTCAGTCCTCCATTGTTCAAGCTCCAACTTTTCCTCAGCAACACTTTCACAGTCAG
____________________________________________________________
consensus CCCTTTCAGTCCTCCATTGTTCAAGCTCCAACTTTTCCTCAGCAACACTTTCACAGTCAG
. : . : . : . : . : . :
JMSF030J20- AAACCGAAGACGATGAGTACAGCGGTGAAGAAGAAGAAGAAGAAGAAGACGACGAAAGCG
JMSF035D12- AAACCGAAGACGATGAGTACAGCGGTGAAGAAGAAGAAGAAGAAGAAGACGACGAAAGCG
JMSF044H03+ AAACCGAAGACGATGAGTACAGCGGTGAAGAAGAAGAAGAAGAAGAAGACGACGAAAGCG
____________________________________________________________
consensus AAACCGAAGACGATGAGTACAGCGGTGAAGAAGAAGAAGAAGAAGAAGACGACGAAAGCG
. : . : . : . : . : . :
JMSF030J20- GAAATGGGTCGGCGTCATTTTCTGCGGCGGCGGCGGCGACGGGGAGTTTGCCGCCGTTGA
JMSF035D12- GAAATGGGTCGGCGTCATTTTCTGCGGCGGCGGCGGCGACGGGGAGTTTGCCGCCGTTGA
JMSF044H03+ GAAATGGGTCGGCGTCATTTTCTGCGGCGGCGGCGGCGACGGGGAGTTTGCCGCCGTTGA
____________________________________________________________
consensus GAAATGGGTCGGCGTCATTTTCTGCGGCGGCGGCGGCGACGGGGAGTTTGCCGCCGTTGA
. : . : . : . : . : . :
JMSF030J20- AACAGAAAAGAAGGAGGTACAGAAAGCAATACCCTGGCGAGATCAAGGGTATCACTGAAG
JMSF035D12- AACAGAAAAGAAGGAGGTACAGAAAGCAATACCCTGGCGAGATCAAGGGTATCACTGAAG
JMSF044H03+ AACAGAAAAGAAGGAGGTACAGAAAGCAATACCCTGGCGAGATCAAGGGTATCACTGAAG
____________________________________________________________
consensus AACAGAAAAGAAGGAGGTACAGAAAGCAATACCCTGGCGAGATCAAGGGTATCACTGAAG
. : . : . : . : . : . :
JMSF030J20- AGATGAGGTTTGTGACGATGAAACTCCGCAACAGCGGCAAACCGTCAAAGAGTAAGCCGA
JMSF035D12- AGATGAGGTTTGTGACGATGAAACTCCGCAACAGCGGCAAACCGTCAAAGAGTAAGCCGA
JMSF044H03+ AGATGAGGTTTGTGACGATGAAACTCCGCAACAGCGGCAAACCGTCAAAGAGTAAGCCGA
____________________________________________________________
consensus AGATGAGGTTTGTGACGATGAAACTCCGCAACAGCGGCAAACCGTCAAAGAGTAAGCCGA
. : . : . : . : . : . :
JMSF030J20- TAGGTGAGAGTGACAAAGAAGAATCGGAAGAGAGTGGCAGTGAAGAAGCAATGGAGGAAG
JMSF035D12- TAGGTGAGAGTGACAAAGAAGAATCGGAAGAGAGTGGCAGTGAAGAAGCAATGGAGGAAG
JMSF044H03+ TAGGTGAGAGTGACAAAGAAGAATCGGAAGAGAGTGGCAGTGAAGAAGCAATGGAGGAAG
rJMSF030J20+ GAGGAAG
____________________________________________________________
consensus TAGGTGAGAGTGACAAAGAAGAATCGGAAGAGAGTGGCAGTGAAGAAGCAATGGAGGAAG
. : . : . : . : . : . :
JMSF030J20- GTGAGGTCAGTGACAGTGAAGGGTCGGTTTCAGTGGATGAAGATGATGAGGATGGAAATG
JMSF035D12- GTGAGGTCAGTGACAGTGAAGGGTCGGTTTCAGTGGATGAAGATGATGAGGATGGAAATG
JMSF044H03+ GTGAGGTCAGTGACAGTGAAGGGTCGGTTTCAGTGGATGAAGATGATGAGGATGGAAATG
rJMSF030J20+ GTGAGGTCAGTGACAGTGAAGGGTCGGTTTCAGTGGATGAAGATGATGAGGATGGAAATG
____________________________________________________________
consensus GTGAGGTCAGTGACAGTGAAGGGTCGGTTTCAGTGGATGAAGATGATGAGGATGGAAATG
. : . : . : . : . : . :
JMSF030J20- GAAAGTCTTGGCAGCCTAGTACGGAAGGATTCTTGAAGTACCTTGTGGATACTAAGCTTG
JMSF035D12- GAAAGTCTTGGCAGCCTAGTACGGAAGGATTCTTGAAGTACCTTGTGGATACTAAGCTTG
JMSF044H03+ GAAAGTCTTGGCAGCCTAGTACGGAAGGATTCTTGAAGTACCTTGTGGATACTAAGCTTG
rJMSF030J20+ GAAAGTCTTGGCAGCCTAGTACGGAAGGATTCTTGAAGTACCTTGTGGATACTAAGCTTG
rJMSF035D12+ CCTTGTGGATACTAAGCTTG
____________________________________________________________
consensus GAAAGTCTTGGCAGCCTAGTACGGAAGGATTCTTGAAGTACCTTGTGGATACTAAGCTTG
. : . : . : . : . : . :
JMSF030J20- T
JMSF035D12- TGTTCGGCACAATTGAACGCATTG
JMSF044H03+ TGTTCGGCACAATTGAACGCATTGTTGATGAATCCAGCGATGTTTCTTATGCTTACTTCA
rJMSF030J20+ TGTTCGGCACAATTGAACGCATTGTTGATGAATCCAGCGATGTTTCTTATGCTTACTTCA
rJMSF035D12+ TGTTCGGCACAATTGAACGCATTGTTGATGAATCCAGCGATGTTTCTTATGCTTACTTCA
____________________________________________________________
consensus TGTTCGGCACAATTGAACGCATTGTTGATGAATCCAGCGATGTTTCTTATGCTTACTTCA
. : . : . : . : . : . :
JMSF044H03+ GAAAGACGGGATTAGAACGAGCAGATTGCATTTCCAAAGATTTAGAATGGTTTAGCCAAC
rJMSF030J20+ GAAAGACGGGATTAGAACGAGCAGATTGCATTTCCAAAGATTTAGAATGGTTTAGCCAAC
rJMSF035D12+ GAAAGACGGGATTAGAACGAGCAGATTGCATTTCCAAAGATTTAGAATGGTTTAGCCAAC
____________________________________________________________
consensus GAAAGACGGGATTAGAACGAGCAGATTGCATTTCCAAAGATTTAGAATGGTTTAGCCAAC
. : . : . : . : . : . :
JMSF044H03+ AGGGTAATGTTATTCCAGAACCTAGCAGTCCTGGTGTTGATTACTCTAAGTAT
rJMSF030J20+ AGGGTAATGTTATTCCAGAACCTAGCAGTCCTGGTGTTGATTACTCTAAGTATCTCGAGG
rJMSF035D12+ AGGGTAATGTTATTCCAGAACCTAGCAGTCCTGGTGTTGATTACTCTAAGTATCTCGAGG
____________________________________________________________
consensus AGGGTAATGTTATTCCAGAACCTAGCAGTCCTGGTGTTGATTACTCTAAGTATCTCGAGG
. : . : . : . : . : . :
rJMSF030J20+ AGCTCGCGGAGACTAATCCCCCATTGTTTCTCTGCCACTTCTACAACATATACTTCTCCC
rJMSF035D12+ AGCTCGCGGAGACTAATCCCCCATTGTTTCTCTGCCACTTCTACAACATATACTTCTCCC
____________________________________________________________
consensus AGCTCGCGGAGACTAATCCCCCATTGTTTCTCTGCCACTTCTACAACATATACTTCTCCC
. : . : . : . : . : . :
rJMSF030J20+ ATATAGCTGGAGGTCAAGTTATAGCTAAAAAGGTTTCTGAAAAGCTCTTAGAGGGAAGAG
rJMSF035D12+ ATATAGCTGGAGGTCAAGTTATAGCTAAAAAGGTTTCTGAAAAGCTCTTAGAAGGAAGAG
____________________________________________________________
consensus ATATAGCTGGAGGTCAAGTTATAGCTAAAAAGGTTTCTGAAAAGCTCTTAGAGGGAAGAG
. : . : . : . : . : . :
rJMSF030J20+ TATTGGAGGTCTACACGTGGGAAGGAGACCCCGAGAAGCAGCTGCAGGGTGTAAGGGAGA
rJMSF035D12+ TATTGGAGGTCTACACGTGGGAAGGAGACCCCGAGAAGCAGCTGCAGGGTGTAAGGGAGA
____________________________________________________________
consensus TATTGGAGGTCTACACGTGGGAAGGAGACCCCGAGAAGCAGCTGCAGGGTGTAAGGGAGA
. : . : . : . : . : . :
rJMSF030J20+ AGCTCAACATGCTCAGTGAGCACTGGTCTAGAAAGGAGAAAAACAAATGTTTGCGGGATA
rJMSF035D12+ AGCTCAACATGCTCAGTGAGCACTGGTCTAGAAAGGAGAAAAACAAATGTTTGCGGGATA
____________________________________________________________
consensus AGCTCAACATGCTCAGTGAGCACTGGTCTAGAAAGGAGAAAAACAAATGTTTGCGGGATA
. : . : . : . : . : . :
rJMSF030J20+ TACCCAAGGCATTCCGGTTTATGGGGCAGATAGTCCGGTTAATCGTCTTCCTGTAAAACG
rJMSF035D12+ TACCCAAGGCATTCCGGTTTATGGGGCAGATAGTCCGGTTAATCGTCTTCCTGTAAAACG
____________________________________________________________
consensus TACCCAAGGCATTCCGGTTTATGGGGCAGATAGTCCGGTTAATCGTCTTCCTGTAAAACG
. : . : . : . : . : . :
rJMSF030J20+ GGCAGTTCCAGCCCGAAGAGTGCACTTATAGCTTTGGATG
rJMSF035D12+ GGCAGTTCCAGCCCGAAGAGTGCACTTATAGCTTTGGATGACATGGCGCAATGAAACATA
____________________________________________________________
consensus GGCAGTTCCAGCCCGAAGAGTGCACTTATAGCTTTGGATGACATGGCGCAATGAAACATA
. : . : . : . : . : . :
rJMSF035D12+ GCCCAGAATGGACTATGTGGTCTAATGGTACCCGGGTTGGACTTCTATTTGGAAGATTAT
____________________________________________________________
consensus GCCCAGAATGGACTATGTGGTCTAATGGTACCCGGGTTGGACTTCTATTTGGAAGATTAT
. : . : . : . : . : . :
rJMSF035D12+ AAGTTCGAGCCTCAATGGAGGCGTTATTGGTTCTTTGTGTTTCAGTAGGTTGAGAAAGTA
____________________________________________________________
consensus AAGTTCGAGCCTCAATGGAGGCGTTATTGGTTCTTTGTGTTTCAGTAGGTTGAGAAAGTA