Contig 005743:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN043A01+                                                                     TA
                      ____________________________________________________________
consensus                                                                       TA
 
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JMFN043A01+           CAAAATTCAACAATACAACTATACAAGTTTAATAACTACAACTCCACATGTCCATAAAAC
JMSF035C05+                                      TTTAATAACTACAACTCCACATGTCCATAAAAC
                      ____________________________________________________________
consensus             CAAAATTCAACAATACAACTATACAAGTTTAATAACTACAACTCCACATGTCCATAAAAC
 
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JMFN043A01+           AAAAGTCCATCGCAAAATTTAACAACACAATTACACAAATTGTAAGTCCACAA-TACAAA
JMSF035C05+           AAAAGTCCATCGCAAAATTTAACAACACAATTACACAAATTGTAAGTCCACAA-TACAAA
rJMSF035C05-                        AAATTTAACAACACAATTACACAAATTGTAAGTCCACAATTACAAA
                      ____________________________________________________________
consensus             AAAAGTCCATCGCAAAATTTAACAACACAATTACACAAATTGTAAGTCCACAA-TACAAA
 
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JMFN043A01+           CATAATAAAAACAATGTAAACATAATAGTATTCAAACTAAGTCATGGCTTCAACATAATC
JMSF035C05+           CATAATAAAAACAATGTAAACATAATAGTATTCAAACTAAGTCATGGCTTCAACATAATC
rJMSF035C05-          CATAATAAAAACAATGTAAACATAATAGTATTCAAACTAAGTCATGGCTTCAACATAATC
                      ____________________________________________________________
consensus             CATAATAAAAACAATGTAAACATAATAGTATTCAAACTAAGTCATGGCTTCAACATAATC
 
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JMFN043A01+           TCCTCTTGTCCAGAATCCTCCTTTCGATTTTTCTTCCGCCTATACTTGTTACGAAGTCAA
JMSF035C05+           TCCTCTTGTCCAGAATCCTCCTTTCGATTTTTCTTCCGCCTATACTTGTTACGAAGTCAA
rJMSF035C05-          TCCTCTTGTCCAGAATCCTCCTTTCGATTTTTCTTCCGCCTATACTTGTTACGAAGTCAA
                      ____________________________________________________________
consensus             TCCTCTTGTCCAGAATCCTCCTTTCGATTTTTCTTCCGCCTATACTTGTTACGAAGTCAA
 
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JMFN043A01+           TCCCCACCATAAATAAGAGCTTCAATAGATTGCTCATTGTCATCCTCACTGGAGTCGCCG
JMSF035C05+           TCCCCACCATAAATAAGAGCTTCAATAGATTGCTCATTGTCATCCTCACTGGAGTCGCCG
rJMSF035C05-          TCCCCACCATAAATAAGAGCTTCAATAGATTGCTCATTGTCATCCTCACTGGAGTCGCCG
                      ____________________________________________________________
consensus             TCCCCACCATAAATAAGAGCTTCAATAGATTGCTCATTGTCATCCTCACTGGAGTCGCCG
 
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JMFN043A01+           CCTCGCCGCCAAGAAGAGTCGCAATCGTCAGTTGTTGCAACTTGCAAGGTCTCCGCCTCG
JMSF035C05+           CCTCGCCGCCAAGAAGAGTCGCAATCGTCAGTTGTTGCAACTTGCAAGGTCTCCGCCTCG
rJMSF035C05-          CCTCGCCGCCAAGAAGAGTCGCAATCGTCAGTTGTTGCAACTTGCAAGGTCTCCGCCTCG
                      ____________________________________________________________
consensus             CCTCGCCGCCAAGAAGAGTCGCAATCGTCAGTTGTTGCAACTTGCAAGGTCTCCGCCTCG
 
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JMFN043A01+           CCGCCGCCCGCCAAGAAGAGACGCAATCGTCAGTCGTTGCAACTTGCAAGGTCTCCGCCT
JMSF035C05+           CCGCCGCCCGCCAAGAAGAGACGCAATCGTCAGTCGTTGCAACTTGCAAGGTCTCCGCCT
rJMSF035C05-          CCGCCGCCCGCCAAGAAGAGACGCAATCGTCAGTCGTTGCAACTTGCAAGGTCTCCGCCT
                      ____________________________________________________________
consensus             CCGCCGCCCGCCAAGAAGAGACGCAATCGTCAGTCGTTGCAACTTGCAAGGTCTCCGCCT
 
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JMFN043A01+           CGCCGGAGTCACCGCCAAGCCGAGTCTCAGTCCTCTCACGTCGTGTCTGCGGAATTGGGG
JMSF035C05+           CGCCGGAGTCACCGCCAAGCCGAGTCTCAGTCCTCTCACGTCGTGTCTGCGGAATTGGGG
rJMSF035C05-          CGCCGGAGTCACCGCCAAGCCGAGTCTCAGTCCTCTCACGTCGTGTCTGCGGAATTGGGG
                      ____________________________________________________________
consensus             CGCCGGAGTCACCGCCAAGCCGAGTCTCAGTCCTCTCACGTCGTGTCTGCGGAATTGGGG
 
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JMFN043A01+           ATGACGGATGGACGGCCG                                          
JMSF035C05+           ATGACGGATGGACGGCCGATTGGTATTTAGTCGACTGCAGACTTGGGAGTTGGGAGTCTC
rJMSF035C05-          ATGACGGATGGACGGCCGATTGGTATTTAGTCGACTGCAGACTTGGGAGTTGGGAGTCTC
                      ____________________________________________________________
consensus             ATGACGGATGGACGGCCGATTGGTATTTAGTCGACTGCAGACTTGGGAGTTGGGAGTCTC