Contig 005742:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF038D22+                            GTAGTTTATATAGACTTCTACACAAACATGGTGCAAGGGGAG
                      ____________________________________________________________
consensus                               GTAGTTTATATAGACTTCTACACAAACATGGTGCAAGGGGAG
 
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rJMSF013L06+                                                       GAAGGGGATGAATTA
rJMSF038D22+          GNCATTGGATGAGAAGCGGCGGCTTTGTATGGCTTATGATGTGGCGAAGGGGATGAATTA
                      ____________________________________________________________
consensus             GNCATTGGATGAGAAGCGGCGGCTTTGTATGGCTTATGATGTGGCGAAGGGGATGAATTA
 
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rJMSF013L06+          TCTTCATAAACGAAATCCACCGATTGTTCATCGAGATTTAAAATCTCCAAATCTTTTAGT
rJMSF038D22+          TCTTCATAAACGAAATCCACCGATTGTTCATCGAGATTTAAAATCTCCAAATCTTTTAGT
                      ____________________________________________________________
consensus             TCTTCATAAACGAAATCCACCGATTGTTCATCGAGATTTAAAATCTCCAAATCTTTTAGT
 
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rJMSF013L06+          TGACAAGAAGTATACAGTGAAGGTGTGTGATTTTGGCCTTTCCCGCTTAAAAGCAAACAC
rJMSF038D22+          TGACAAGAAGTATACAGTGAAGGTGTGTGATTTTGGCCTTTCCCGCTTAAAAGCAAACAC
rJMSF045O07+                                                TTTCCCGCTTAAAAGCAAACAC
                      ____________________________________________________________
consensus             TGACAAGAAGTATACAGTGAAGGTGTGTGATTTTGGCCTTTCCCGCTTAAAAGCAAACAC
 
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rJMSF013L06+          ATTTCTTTCATCAAAGTCGGCTGCTGGAACTCCAGAGTGGATGGCACCTGAAGTTCTCCG
rJMSF038D22+          ATTTCTTTCATCAAAGTCGGCTGCTGGAACTCCAGAGTGGATGGCACCTGAAGTTCTCCG
rJMSF045O07+          ATTTCTTTCATCAAAGTCGGCTGCTGGAACTCCAGAGTGGATGGCACCTGAAGTTCTCCG
rJMSF034P12+                                                                  TCCG
                      ____________________________________________________________
consensus             ATTTCTTTCATCAAAGTCGGCTGCTGGAACTCCAGAGTGGATGGCACCTGAAGTTCTCCG
 
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rJMSF013L06+          CGATGAACCATCTAATGAAAAATCAGATGTGTATAGTTTTGGAGTAATTTTATGGGAGCT
rJMSF038D22+          CGATGAACCATCTAATGAAAAATCAGATGTGTATAGTTTTGGAGTAATTTTATGGGAGCT
rJMSF045O07+          CGATGAACCATCTAATGAAAAATCAGATGTGTATAGTTTTGGAGTAATTTTATGGGAGCT
rJMSF034P12+          CGATGAACCATCTAATGAAAAATCAGATGTGTATAGTTTTGGAGTAATTTTATGGGAGCT
                      ____________________________________________________________
consensus             CGATGAACCATCTAATGAAAAATCAGATGTGTATAGTTTTGGAGTAATTTTATGGGAGCT
 
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rJMSF013L06+          GGCTACATTGCAACAGCCCTGGGGTAATTTGAATCCTGCACAGGTTGTGGCAGCTGTTGG
rJMSF038D22+          GGCTACATTGCAACAGCCCTGGGGTAATTTGAATCCTGCACAGGTTGTGGCAGCTGTTGG
rJMSF045O07+          GGCTACATTGCAACAGCCCTGGGGTAATTTGAATCCTGCACAGGTTGTGGCAGCTGTTGG
rJMSF034P12+          GGCTACATTGCAACAGCCCTGGGGTAATTTGAATCCTGCACAGGTTGTGGCAGCTGTTGG
                      ____________________________________________________________
consensus             GGCTACATTGCAACAGCCCTGGGGTAATTTGAATCCTGCACAGGTTGTGGCAGCTGTTGG
 
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rJMSF013L06+          CTTTAAGGGCAAAAGGCTTGAAATTCCACATGATTTGAATCCCCAAGTTGCGGCAATTAT
rJMSF038D22+          CTTTAAGGGCAAAAGGCTTGAAATTCCACATGATTTGAATCCCCAAGTTGCGGCAATTAT
rJMSF045O07+          CTTTAAGGGCAAAAGGCTTGAAATTCCACATGATTTGAATCCCCAAGTTGCGGCAATTAT
rJMSF034P12+          CTTTAAGGGCAAAAGGCTTGAAATTCCACATGATTTGAATCCCCAAGTTGCGGCAATTAT
                      ____________________________________________________________
consensus             CTTTAAGGGCAAAAGGCTTGAAATTCCACATGATTTGAATCCCCAAGTTGCGGCAATTAT
 
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rJMSF013L06+          TGAGGCTTGCTGGGCGAATGAGCCATGGAAACGCCCTTCCTTTTCAACTATTATGGATTT
rJMSF038D22+          TGAGGCTTGCTGGGCGAATGAGCCATGGAAACGCCCTTCCTTTTCAACTATTATGGATTT
rJMSF045O07+          TGAGGCTTGCTGGGCGAATGAGCCATGGAAACGCCCTTCCTTTTCAACTATTATGGATTT
rJMSF034P12+          TGAGGCTTGCTGGGCGAATGAGCCATGGAAACGCCCTTCCTTTTCAACTATTATGGATTT
                      ____________________________________________________________
consensus             TGAGGCTTGCTGGGCGAATGAGCCATGGAAACGCCCTTCCTTTTCAACTATTATGGATTT
 
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rJMSF013L06+          GTTGAGACCGTTGATTAAACTTCCTGTAACACCCCAGCCAGGTCGTACTGACATGCAATT
rJMSF038D22+          GTTGAGACCGTTGATTAAACTTCCTGTAACACCCCAGCCAGGTCGTACTGACATGCAATT
rJMSF045O07+          GTTGAGACCGTTGATTAAACTTCCTGTAACACCCCAGCCAGGTCGTACTGACATGCAATT
rJMSF034P12+          GTTGAGACCGTTGATTAAACTTCCTGTAACACCCCAGCCAGGTCGTACTGACATGCAATT
                      ____________________________________________________________
consensus             GTTGAGACCGTTGATTAAACTTCCTGTAACACCCCAGCCAGGTCGTACTGACATGCAATT
 
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rJMSF013L06+          GCTCACATGAATGCATGAAAGTACATACGAAGTTGGATATCTGCACATAGTGTTTGGCAT
rJMSF038D22+          GCTCACATGAATGCATGAAAGTACATACGAAGTTGGATATCTGCACATAGTGTTTGGCAT
rJMSF045O07+          GCTCACATGAATGCATGAAAGTACATACGAAGTTGGATATCTGCACATAGTGTTTGGCAT
rJMSF034P12+          GCTCACATGAATGCATGAAAGTACATACGAAGTTGGATATCTGCACATAGTGTTTGGCAT
                      ____________________________________________________________
consensus             GCTCACATGAATGCATGAAAGTACATACGAAGTTGGATATCTGCACATAGTGTTTGGCAT
 
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rJMSF013L06+          TCTTTGTTTTTCAGCTTCTTTTGGAGGGATGCTGCTTCAATTATGTGAGGCTGAATTTTG
rJMSF038D22+          TCTTTGTTTTTCAGCTTCTTTTGGAGGGATGCTGCTTCAATTATGTGAGGCTGAATTTTG
rJMSF045O07+          TCTTTGTTTTTCAGCTTCTTTTGGAGGGATGCTGCTTCAATTATGTGAGGCTGAATTTTG
rJMSF034P12+          TCTTTGTTTTTCAGCTTCTTTTGGAGGGATGCTGCTTCAATTATGTGAGGCTGAATTTTG
                      ____________________________________________________________
consensus             TCTTTGTTTTTCAGCTTCTTTTGGAGGGATGCTGCTTCAATTATGTGAGGCTGAATTTTG
 
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rJMSF013L06+          TAAATACTAGTTCAGGTAGCCCGTTGAGAAACAATCAGCAGCAGCGTGCATGTATAATTT
rJMSF038D22+          TAAATACTAGTTCAGGTAGCCCGTTGAGAAACAATCAGCAGCAGCGTGCATGTATAATTT
rJMSF045O07+          TAAATACTAGTTCAGGTAGCCCGTTGAGAAACAATCAGCAGCAGCGTGCATGTATAATTT
rJMSF034P12+          TAAATACTAGTTCAGGTAGCCCGTTGAGAAACAATCAGCAGCAGCGTGCATGTATAATTT
                      ____________________________________________________________
consensus             TAAATACTAGTTCAGGTAGCCCGTTGAGAAACAATCAGCAGCAGCGTGCATGTATAATTT
 
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rJMSF013L06+          CTTCCATTAAGACACCGATTTGCCGAATGTTGTACTACTCCAGCAATCATTTATAATTAT
rJMSF038D22+          CTTCCATTAAGACACCGATTTGCCGAATGTTGTACTACTCCAGCAATCATTTATAATTAT
rJMSF045O07+          CTTCCATTAAGACACCGATTTGCCGAATGTTGTACTACTCCAGCAATCATTTATAATTAT
rJMSF034P12+          CTTCCATTAAGACACCGATTTGCCGAATGTTGTACTACTCCAGCAATCATTTATAATTAT
                      ____________________________________________________________
consensus             CTTCCATTAAGACACCGATTTGCCGAATGTTGTACTACTCCAGCAATCATTTATAATTAT
 
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rJMSF013L06+          TTTTTTCTCTCTT                                               
rJMSF038D22+          TTTTTTCTCTCTTTCAAAATTTAACTACTGATTTTGTATCAATAAACACTGCAATTTTAA
rJMSF045O07+          TTTTTTCTCTCTTTCAAAATTTAACTACTGATTTTGTATCAATAAACACTGCAATTTTAA
rJMSF034P12+          TTTTTTCTCTCTTTCAAAATTTAACTACTGATTTTGTATCAATAAACACTGCAATTTTAA
                      ____________________________________________________________
consensus             TTTTTTCTCTCTTTCAAAATTTAACTACTGATTTTGTATCAATAAACACTGCAATTTTAA
 
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rJMSF038D22+          ATTGGGTTGGGAAAT                                             
rJMSF045O07+          ATTGGGTTGGGAAATTCACACCATTCAAGCGCCGGAA                       
rJMSF034P12+          ATTGGGTTGGGAAATTCACACCATTCAAGCGCCGGAAGTGGTGAAAGATTTCATGCAACT
                      ____________________________________________________________
consensus             ATTGGGTTGGGAAATTCACACCATTCAAGCGCCGGAAGTGGTGAAAGATTTCATGCAACT