| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003M23 | Sequence | 578 | 005739 (10) | ref|XP_011099392.1| | 7e-86 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | 686 | 005739 (10) | ref|XP_011099392.1| | 3e-85 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial |
| JMFF015C22 | Sequence | 496 | 005739 (10) | ref|XP_011099392.1| | 2e-80 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | 631 | 005739 (10) | ref|XP_011099392.1| | 6e-84 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial |
| JMFN019M18 | Sequence | 627 | 005739 (10) | ref|XP_011099392.1| | 2e-85 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | |||||
| JMFN025O14 | Sequence | 642 | 005739 (10) | ref|XP_011099392.1| | 2e-85 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | |||||
| JMFN035P05 | Sequence | 609 | 005739 (10) | ref|XP_011099392.1| | 1e-85 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | |||||
| JMSF034A16 | Sequence | 682 | 005739 (10) | ref|XP_011099392.1| | 2e-84 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | 666 | 005739 (10) | ref|XP_011099392.1| | 1e-84 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial |
| JMSF053E07 | Sequence | 680 | 001553 (3) | ref|XP_007018428.1| | 2e-40 | Integrase-type DNA-binding superfamily protein [Theobroma cacao] gb|EOY15653.1| | 664 | 005739 (10) | ref|XP_011099392.1| | 1e-85 | PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial |
This contig is upended
. : . : . : . : . : . :
JMFN025O14+ C
rJMSF034A16- ATTTCCC
____________________________________________________________
consensus ATTTCCC
. : . : . : . : . : . :
JMFN019M18+ TAAAGTTCGCTTTATTAATTTCAAGAAACTTGGCTTGGGCTCATTC
JMFN035P05+ TTC
rJMSF053E07- AAAGGTTCGGTAAAGTTCGCTTTATTAATTTCAAGAAACTTGGCTTGGGCTCATTC
rJMFF015C22- GGCTTGGGCTCATTC
JMFN025O14+ ATACAAAGGTTCGGTAAAGTTCGCTTTATTAATTTCAAGAAACTTGGCTTGGGCTCATTC
rJMSF034A16- ATACAAAGGTTCGGTAAAGTTCGCTTTATTAATTTCAAGAAACTTGGCTTGGGCTCATTC
____________________________________________________________
consensus ATACAAAGGTTCGGTAAAGTTCGCTTTATTAATTTCAAGAAACTTGGCTTGGGCTCATTC
. : . : . : . : . : . :
JMFN019M18+ CTGAAGACACACCC-AAACTTTATAAGTTAAGCAAGATGCAAGAGACACTATTTATAGCC
JMFN035P05+ CTGAAGACACACCC-AAACTTTATAAGTTAAGCAAGATGCAAGAGACACTATTTATAGCC
rJMSF053E07- CTGAAGACACACCC-AAACTTTATAAGTTAAGCAAGATGCAAGAGACACTATTTATAGCC
rJMFF015C22- ATGAAGACACACCCAAAACTTTATAAGTTAAGCAAGATGCAAGAGACACTATTTATAGCC
JMFN025O14+ CTGAAGACACACCC-AAACTTTATAAGTTAAGCAAGATGCAAGAGACACTATTTATAGCC
JMFF003M23+ TTTATAAGTTAAGCAAGATGCAAGAGACACTATTTATAGCC
rJMSF034A16- CTGAAGACACACCC-AAACTTTATAAGTTAAGCAAGATGCAAGAGACACTATTTATAGCC
____________________________________________________________
consensus CTGAAGACACACCC-AAACTTTATAAGTTAAGCAAGATGCAAGAGACACTATTTATAGCC
. : . : . : . : . : . :
JMFN019M18+ TGAGAGAAAATTTCAATTCATCCCTCCATCTTGGGAGGGCCTCTCCACTTGAAATTGTCG
JMFN035P05+ TGAGAGAAAATTTCAATTCATCCCTCCATCTTGGGAGGGCCTCTCCACTTGAAATTGTCG
rJMSF053E07- TGAGAGAAAATTTCAATTCATCCCTCCATCTTGGGAGGGCCTCTCCACTTGAAATTGTCG
rJMFF015C22- TGAGAGAAAATTTCAATTCATCCCTCCATCTTGGGAGGGCCTCTCCACTTGAAATTGTCG
JMFN025O14+ TGAGAGAAAATTTCAATTCATCCCTCCATCTTGGGAGGGCCTCTCCACTTGAAATTGTCG
rJMFF003M23- TCCACTTGAAATTGTCG
JMFF015C22+ TCCACTTGAAATTGTCG
JMFF003M23+ TGAGAGAAAATTTCAATTCATCCCTCCATCTTGGGAGGGCCTCTCCACTTGAAATTGTCG
rJMSF034A16- TGAGAGAAAATTTCAATTCATCCCTCCATCTTGGGAGGGCCTCTCCACTTGAATTTGTCG
____________________________________________________________
consensus TGAGAGAAAATTTCAATTCATCCCTCCATCTTGGGAGGGCCTCTCCACTTGAAATTGTCG
. : . : . : . : . : . :
JMFN019M18+ GCATAGGCCTTAATCTTCAACAATGGTGTATGGTGTTTCTTGACCGTATACTCCCATCCA
JMFN035P05+ GCATAGGCCTTAATCTTCAACAATGGTGTATGGTGTTTCTTGACCGTATACTCCCATCCA
rJMSF053E07- GCATAGGCCTTAATCTTCAACAATGGTGTATGGTGTTTCTTGACCGTATACTCCCATCCA
rJMFF015C22- GCATAGGCCTTAATCTTCAACAATGGTGTATGGTGTTTCTTGACCGTATACTCCCATCCA
JMFN025O14+ GCATAGGCCTTAATCTTCAACAATGGTGTATGGTGTTTCTTGACCGTATACTCCCATCCA
rJMFF003M23- GCATAGGCCTTAATCTTCAACAATGGTGTATGGTGTTTCTTGACCGTATACTCCCATCCA
JMFF015C22+ GCATAGGCCTTAATCTTCAACAATGGTGTATGGTGTTTCTTGACCGTATACTCCCATCCA
JMFF003M23+ GCATAGGCCTTAATCTTCAACAATGGTGTATGGTGTTTCTTGACCGTATACTCCCATCCA
JMSF034A16+ CCGTATACTCCCATCCA
rJMSF034A16- GCATAGGCCTTAATCTTCAACAATGGTGTATGGTGTTTCTTGACCGTATACTCCCATCCA
____________________________________________________________
consensus GCATAGGCCTTAATCTTCAACAATGGTGTATGGTGTTTCTTGACCGTATACTCCCATCCA
. : . : . : . : . : . :
JMFN019M18+ TGTCTTTCAGCAAATGCTTTTGCAGCATCTTCACTGTCAAAGCCCAGCGCAGCATCACCA
JMFN035P05+ TGTCTTTCAGCAAATGCTTTTGCAGCATCTTCACTGTCAAAGCCCAGCGCAGCATCACCA
rJMSF053E07- TGTCTTTCAGCAAATGCTTTTGCAGCATCTTCACTGTCAAAGCCCAGCGCAGCATCACCA
rJMFF015C22- TGTCTTTCAGCAAATGCTTTTGCAGCATCTTCACTGTCAAAGCCCAGCGCAGCATCACCA
JMFN025O14+ TGTCTTTCAGCAAATGCTTTTGCAGCATCTTCACTGTCAAAGCCCAGCGCAGCATCACCA
rJMFF003M23- TGTCTTTCAGCAAATGCTTTTGCAGCATCTTCACTGTCAAAGCCCAGCGCAGCATCACCA
JMFF015C22+ TGTCTTTCAGCAAATGCTTTTGCAGCATCTTCACTGTCAAAGCCCAGCGCAGCATCACCA
JMFF003M23+ TGTCTTTCAGCAAATGCTTTTGCAGCATCTTCACTGTCAAAGCCCAGCGCAGCATCACCA
JMSF034A16+ TGTCTTTCAGCAAATGCTTTTGCAGCATCTTCACTGTCAAAGCCCAGCGCAGCATCACCA
rJMSF034A16- TGTCTTTCAGCAAATGCTTTTGCAGCATCTTCACTGTCAAAGCCCAGCGCAGCATCACCA
____________________________________________________________
consensus TGTCTTTCAGCAAATGCTTTTGCAGCATCTTCACTGTCAAAGCCCAGCGCAGCATCACCA
. : . : . : . : . : . :
JMFN019M18+ ACATTGGCATATGCATCCCCTGTGGACGTCCAACCCATCAATGGGTTTTCCCATTTCTGA
JMFN035P05+ ACATTGGCATATGCATCCCCTGTGGACGTCCAACCCATCAATGGGTTTTCCCATTTCTGA
rJMSF053E07- ACATTGGCATATGCATCCCCTGTGGACGTCCAACCCATCAATGGGTTTTCCCATTTCTGA
rJMFF015C22- ACATTGGCATATGCATCCCCTGTGGACGTCCAACCCATCAATGTGTTTTCCCATTCCTGA
JMFN025O14+ ACATTGGCATATGCATCCCCTGTGGACGTCCAACCCATCAATGGGTTTTCCCATTTCTGA
rJMFF003M23- ACATTGGCATATGCATCCCCTGTGGACGTCCAACCCATCAATGGGTTTTCCCATTTCTGA
JMFF015C22+ ACATTGGCATATGCATCCCCTGTGGACGTCCAACCCATCAATGTGTTTTCCCATTCCTGA
JMFF003M23+ ACATTGGCATATGCATCCCCTGTGGACGTCCAACCCATCAATGGGTTTTCCCATTTCTGA
JMSF034A16+ ACATTGGCATATGCATCCCCTGTGGACGTCCAACCCATCAATGGGTTTTCCCATTTCTGA
rJMSF034A16- ACATTGGCATATGCATCCCCTGTGGACGTCCAACCCATCAATGGGTTTTCCCATTTCTGA
____________________________________________________________
consensus ACATTGGCATATGCATCCCCTGTGGACGTCCAACCCATCAATGGGTTTTCCCATTTCTGA
. : . : . : . : . : . :
JMFN019M18+ GTCGATAAAAAGTTGATTTTCCATCTCCCAACTTTTCCAGATCCTTGCTGACTAGCAGTT
JMFN035P05+ GTCGATAAAAAGTTGATTTTCCATCTCCCAACTTTTCCAGATCCTTGCTGACTAGCAGTT
rJMSF053E07- GTCGATAAAAAGTTGATTTTCCATCTCCCAACTTTTCCAGATCCTTGCTGACTAGCAGTT
rJMFF015C22- GTCGATAAAAAGTTGATTTTCCATCTCCCAACTTTTCCAGATCCTTGCTGACTAGCAGTT
JMFN025O14+ GTCGATAAAAAGTTGATTTTCCATCTCCCAACTTTTCCAGATCCTTGCTGACTAGCAGTT
rJMFF003M23- GTCGATAAAAAGTTGATTTTCCATCTCCCAACTTTTCCAGATCCTTGCTGACTAGCAGTT
JMFF015C22+ GTCGATAAAAAGTTGATTTTCCATCTCCCAACTTTTCCAGATCCTTGCTGACTAGCAGTT
JMFF003M23+ GTCGATAAAAAGTTGATTTTCCATCTCCCAACTTTTCCAGATCCTTGCTGACTAGCAGTT
JMSF034A16+ GTCGATAAAAAGTTGATTTTCCATCTCCCAACTTTTCCAGATCCTTGCTGACTAGCAGTT
rJMSF034A16- GTCGATAAAAAGTTGATTTTCCATCTCCCAACTTTTCCAGATCCTTGCTGACTAGCAGTT
____________________________________________________________
consensus GTCGATAAAAAGTTGATTTTCCATCTCCCAACTTTTCCAGATCCTTGCTGACTAGCAGTT
. : . : . : . : . : . :
JMFN019M18+ CGCGCAGGAGAGAAAATAATAACCTTCCTACGAAGATGCTCTTGGGGTATACCGGAGACC
JMFN035P05+ CGCGCAGGAGAGAAAATAATAACCTTCCTACGAAGATGCTCTTGGGGTATACCGGAGACC
rJMSF053E07- CGCGCAGGAGAGAAAATAATAACCTTCCTACGAAGATGCTCTTGGGGTATACCGGAGACC
rJMFF015C22- CGCGCAGGAGAGAAAATAATAACCTTCCTACGAAGATGCTCTTGGGGTATACCGGAGACC
JMFN025O14+ CGCGCAGGAGAGAAAATAATAACCTTCCTACGAAGATGCTCTTGGGGTATACCGGAGACC
rJMFF003M23- CGCGCAGGAGAGAAAATAATAACCTTCCTACGAAGATGCTCTTGGGGTATACCGGAGACC
JMFF015C22+ CGCGCAGGAGAGAAAATAATAACCTTCCTACGAAGATGCTCTTGGGGTATACCGGAGACC
JMFF003M23+ CGCGCAGGAGAGAAAATAATAACCTTCCTACGAAGATGCTCTTGGGGTATACCGGAGACC
JMSF034A16+ CGCGCAGGAGAGAAAATAATAACCTTCCTACGAAGATGCTCTTGGGGTATACCGGAGACC
rJMSF034A16- CGCGCAGGAGAGAAAATAATAACCTTCCTACGAAGATGCTCTTGGGGTATACCGGAGACC
____________________________________________________________
consensus CGCGCAGGAGAGAAAATAATAACCTTCCTACGAAGATGCTCTTGGGGTATACCGGAGACC
. : . : . : . : . : . :
JMFN019M18+ ATACCGATCTCTCCCCGTTGGATCTCTACGAGTGAGTCCGATAATGCAGAGAAAGACCTC
JMFN035P05+ ATACCGATCTCTCCCCGTTGGATCTCTACGAGTGAGTCCGATAATGCAGAGAAAGACCTC
rJMSF053E07- ATACCGATCTCTCCCCGTTGGATCTC
rJMFF015C22- ATACCGATCTCTCCCCGTTGGATCTC
JMFN025O14+ ATACCGATCTCTCCCCGTTGGATCTCTACGAGTGAGTCCGATAATGCAGAGAAAGACCTC
rJMFF003M23- ATACCGATCTCTCCCCGTTGGATCTCTACGAGTGAGTCCGATAATGCAGAGAAAGACCTC
JMFF015C22+ ATACCGATCTCTCCCCGTTGGATCTCTACGAGTGAGTCCGATAATGCAGAGAAAGACCTC
JMFF003M23+ ATACCGATCTCTCCCCGTTGGATCTCTACGAGTGAGTCCGATAATGCAGAGAAAGACCTC
JMSF034A16+ ATACCGATCTCTCCCCGTTGGATCTCTACGAGTGAGTCCGATAATGCAGAGAAAGACCTC
rJMSF034A16- ATACCGATCTCTCCCCGTTGGATCTCTACGAGTGAGTCCGATAATGCAGAGAAAGACCTC
____________________________________________________________
consensus ATACCGATCTCTCCCCGTTGGATCTCTACGAGTGAGTCCGATAATGCAGAGAAAGACCTC
. : . : . : . : . : . :
JMFN019M18+ GATAATGGAGTCAGAGGGTATCGATAGGGCTGACGCGAATGCGTCACTGCTCGCCGCAGG
JMFN035P05+ GATAATGGAGTCAGAGGGTATCGATAGGGCTGACGCGAATGCGTCACTGCTCGCCGCAGG
JMFN025O14+ GATAATGGAGTCAGAGGGTATCGATAGGGCTGACGCGAATGCGTCACTGCTCGCCGCAGG
rJMFF003M23- GATAATGGAGTCAGAGGGTATCGATAGGGCTGACGCGAATGCGTCACTGCTCGCCGCAGG
JMFF015C22+ GATAATGGAGTCAGAGGGTATCGATAGGGCTGACGCGAATGCGTCACTGCTCGCCGCAGG
JMFF003M23+ GATAATGGAGTCAGAGGGTATCGATAGGGCTGACGCGAATGCGTCACTGCTCGCCGCAGG
JMSF034A16+ GATAATGGAGTCAGAGGGTATCGATAGGGCTGACGCGAATGCGTCACTGCTCGCCGCAGG
rJMSF034A16- GATAATGGAGTCAGAGGGTATCGATAGGGCTGACGCGAATGCGTCACTGCTCGCCGCAGG
____________________________________________________________
consensus GATAATGGAGTCAGAGGGTATCGATAGGGCTGACGCGAATGCGTCACTGCTCGCCGCAGG
. : . : . : . : . : . :
JMFN019M18+ GAGCTCGCCATTTCCCGGAGCAGAGATGATCGCAAACCTTGC
JMFN035P05+ GAGCTCGCCATTTCCCGGAGCAGAGATGATCGCAAACCTTG
JMFN025O14+ GAGCTCGCCATTTCCCGGAGCAGAGATGATCGCAAACCTTGC
rJMFF003M23- GAGCTCGCCATTTCCCGGAGCAGAGATGATCGCAAACCTTGCGCAGAATGGGCGCAT
JMFF015C22+ GAGCTCGCCATTTCCCGGAGCAGAGATGATCGCAAACCTTGCGCAGAATGGGCGCA
JMFF003M23+ GAGCTCGCCATTTCCCGGAGCAGAGATGATCGCAAACCTTGCGCAGAATGGGCGCAT
JMSF034A16+ GAGCTCGCCATTTCCCGGAGCAGAGATGATCGCAAACCTTGCGCAGAATGGGCGCAT
rJMSF034A16- GAGCTCGCCATTTCCCGGAGCAGAGATGATCGCAAACCTTGCGCAGAATGGGCGCATACC
____________________________________________________________
consensus GAGCTCGCCATTTCCCGGAGCAGAGATGATCGCAAACCTTGCGCAGAATGGGCGCATACC