| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF025D04 | Sequence | 669 | 000916 (5) | ref|XP_004234328.1| | 1e-78 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Solanum lycope | 776 | 005735 (4) | ref|XP_009592734.1| | 3e-81 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial, partial [Nicot |
| JMSF028I04 | Sequence | 329 | 000916 (5) | ref|XP_004234328.1| | 1e-11 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Solanum lycope | 752 | 005735 (4) | ref|XP_009592734.1| | 9e-86 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial, partial [Nicot |
| JMSF032O09 | Sequence | 669 | 000916 (5) | ref|XP_004234328.1| | 1e-78 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Solanum lycope | 734 | 005735 (4) | ref|XP_009592734.1| | 6e-80 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial, partial [Nicot |
| JMSF041P22 | Sequence | 797 | 000916 (5) | ref|XP_004234328.1| | 4e-102 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Solanum lycope | 855 | 005735 (4) | ref|XP_009592734.1| | 2e-100 | PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial, partial [Nicot |
This contig is upended
. : . : . : . : . : . :
rJMSF041P22+ CTGATTTAGAAGATGACATGTCCTGTGCAGCTGCCTATCTCCAGTA
____________________________________________________________
consensus CTGATTTAGAAGATGACATGTCCTGTGCAGCTGCCTATCTCCAGTA
. : . : . : . : . : . :
rJMSF041P22+ TGTAGTACAATATATTCTGGATAATTGCAAAGAAGACATGGAATTCTTNCAATACTTGGA
____________________________________________________________
consensus TGTAGTACAATATATTCTGGATAATTGCAAAGAAGACATGGAATTCTTNCAATACTTGGA
. : . : . : . : . : . :
rJMSF041P22+ TTGAGAAAGGAATCATCAAACGATTAAGTGATGTTGTTGAGAAAAAAGTTGTGCAGTTGA
rJMSF028I04+ TGTTGAGAAAAAAGTTGTGCAGTTGA
____________________________________________________________
consensus TTGAGAAAGGAATCATCAAACGATTAAGTGATGTTGTTGAGAAAAAAGTTGTGCAGTTGA
. : . : . : . : . : . :
rJMSF041P22+ CTTATACTGATGCAATTGAACTACTGCTGAAAACAAAAAAGAAATTTGAATTCCCAGTTA
rJMSF028I04+ CTTATACTGATGCAACTGAACTACTGCTGAAAACAAAAAAGAAATTTGAATTCCCAGTTA
rJMSF025D04+ TTGAATTCCCAGTTA
rJMSF032O09+ TGAATTCCCAGTTA
____________________________________________________________
consensus CTTATACTGATGCAATTGAACTACTGCTGAAAACAAAAAAGAAATTTGAATTCCCAGTTA
. : . : . : . : . : . :
rJMSF041P22+ ACTGGGGATGTGATTTGCAAAGTGAGCATGAACGTTATATCACTGAGGAAGCTTTTGGTG
rJMSF028I04+ ACTGGGGATGTGATTTGCAAAGTGAGCATGAACGTTATATCACTGAGGAAGCTTTTGGTG
rJMSF025D04+ ACTGGGGATGTGATTTGCAAAGTGAGCATGAACGTTATATAACTGAGGAAGCTTTTGGTG
rJMSF032O09+ ACTGGGGATGTGATTTGCAAAGTGAGCATGAACGTTATATAACTGAGGAAGCTTTTGGTG
____________________________________________________________
consensus ACTGGGGATGTGATTTGCAAAGTGAGCATGAACGTTATATCACTGAGGAAGCTTTTGGTG
. : . : . : . : . : . :
rJMSF041P22+ GATGCCCTGTCATAATAAGAGATTATCCAAAGGATATCAAGGCATTTTACATGCGGGAGA
rJMSF028I04+ GATGCCCTGTCATAATAAGAGATTATCCAAAGGATATCAAGGCATTTTACATGCGGGAGA
rJMSF025D04+ GATGCCCTGTCATAATAAGAGATTATCCAAAGGATATTAAGGCATTTTACATGCGGGAGA
rJMSF032O09+ GATGCCCTGTCATAATAAGAGATTATCCAAAGGATATTAAGGCATTTTACATGCGGGAGA
____________________________________________________________
consensus GATGCCCTGTCATAATAAGAGATTATCCAAAGGATATTAAGGCATTTTACATGCGGGAGA
. : . : . : . : . : . :
rJMSF041P22+ ATGATGATGGAAAGACTGTTGCAGCAATGGATATGTTGGTTCCTCGGGTGGGTGAACTTA
rJMSF028I04+ ATGATGATGGAAAGACTGTTGCAGCAATGGATATGTTGGTTCCTCGGGTGGGTGAACTTA
rJMSF025D04+ ATGATGATGGAAAGACTGTTGCAGCAATGGATATGTTGGTTCCTCGGGTGGGTGAACTTA
rJMSF032O09+ ATGATGATGGAAAGACTGTTGCAGCAATGGATATGTTGGTTCCTCGGGTGGGTGAACTTA
____________________________________________________________
consensus ATGATGATGGAAAGACTGTTGCAGCAATGGATATGTTGGTTCCTCGGGTGGGTGAACTTA
. : . : . : . : . : . :
rJMSF041P22+ TCGGTGGAAGCCAGAGAGAGGAACGGCTTGAGTATCTGGAAAAACGCTTAGATGACTTAA
rJMSF028I04+ TCGGTGGAAGCCAGAGAGAGGAACGGCTTGAGTATCTGGAAAAACGCTTAGATGACTTAA
rJMSF025D04+ TCGGTGGAAGCCAGAGAGAGGAACGCCTTGAGTATCTGGAAAAACGCTTAGATGACTTAA
rJMSF032O09+ TCGGTGGAAGCCAGAGAGAGGAACGCCTTGAGTATCTGGAAAAACGCTTAGATGACTTAA
____________________________________________________________
consensus TCGGTGGAAGCCAGAGAGAGGAACGGCTTGAGTATCTGGAAAAACGCTTAGATGACTTAA
. : . : . : . : . : . :
rJMSF041P22+ ATCTGAATAAAGAAAGCTACTGGTGGTATCTTGATCTACGGCGCTATGGCTCAGTTCCTC
rJMSF028I04+ ATCTGAATAAAGAAAGCTACTGGTGGTATCTTGATCTACGGCGCTATGGCTCAGTTCCTC
rJMSF025D04+ ATCTGAATAAAGAAAGCTACTGGTGGTATCTCGATCTACGGCGCTATGGCTCAGTTCCTC
rJMSF032O09+ ATCTGAATAAAGAAAGCTACTGGTGGTATCTCGATCTACGGCGCTATGGCTCAGTTCCTC
____________________________________________________________
consensus ATCTGAATAAAGAAAGCTACTGGTGGTATCTTGATCTACGGCGCTATGGCTCAGTTCCTC
. : . : . : . : . : . :
rJMSF041P22+ ACGCTGGATTTGGACTAGGCTTTGAGAGGCTTGTGCAGTTTGCAACGGGAATAGATAATA
rJMSF028I04+ ACGCTGGATTTGGACTAGGCTTTGAGAGGCTTGTGCAGTTTGCAACGGGAATAGATAATA
rJMSF025D04+ ACGCTGGATTTGGACTAGGCTTTGAGAGGCTTGTGCAGTTTGCGACGGGAATAGATAATA
rJMSF032O09+ ACGCTGGATTTGGACTAGGCTTTGAGAGGCTTGTGCAGTTTGCGACGGGAATAGATAATA
____________________________________________________________
consensus ACGCTGGATTTGGACTAGGCTTTGAGAGGCTTGTGCAGTTTGCGACGGGAATAGATAATA
. : . : . : . : . : . :
rJMSF041P22+ TTCGGGATGCAATACCTTTCCCTAGGACACCTGGCTCAGCTGAGTTTTGAT
rJMSF028I04+ TTCGGGATGCAATACCTTTCCCTAGGACACCTGGCTCAGCTGAGTTTTGAT
rJMSF025D04+ TTCGGGATGCAATACCTTTCCCTAGGACACCTGGCTCAGCCGAGTTTTGATACTCGACTG
rJMSF032O09+ TTCGGGATGCAATACCTTTCCCTAGGACACCTGGCTCAGCCGAGTTTTGATACTCGACTG
____________________________________________________________
consensus TTCGGGATGCAATACCTTTCCCTAGGACACCTGGCTCAGCTGAGTTTTGATACTCGACTG
. : . : . : . : . : . :
rJMSF025D04+ CCGCCACCGGGTTTTGATAGTGTTCAGAATATCTGATGTGCATGATTTTAAAGGAGATGA
rJMSF032O09+ CCGCCACCGGGTTTTGATAGTGTTCAGAATATCTGATGTGCATGATTTTAAAGGAGATGA
____________________________________________________________
consensus CCGCCACCGGGTTTTGATAGTGTTCAGAATATCTGATGTGCATGATTTTAAAGGAGATGA
. : . : . : . : . : . :
rJMSF025D04+ ATTTTTGCACCAGAGATGGACAACAGAATTGCGGCTTTTGATCGGAAAAATTCCATCGTC
rJMSF032O09+ ATTTTTGCACCAGAGATGGACAACAGAATTGCGGCTTTTGATCGGAAAAATTCCATCGTC
____________________________________________________________
consensus ATTTTTGCACCAGAGATGGACAACAGAATTGCGGCTTTTGATCGGAAAAATTCCATCGTC
. : . : . : . : . : . :
rJMSF025D04+ TGGTATGTAACATACACTTGATTTCACTGCCATTTCTGATTGTTGGATACTAAGAAAAGA
rJMSF032O09+ TGGTATGTAACATACACTTGATTTCACTGCCATTTCTGATTGTTGGATACTAAGAAAAGA
____________________________________________________________
consensus TGGTATGTAACATACACTTGATTTCACTGCCATTTCTGATTGTTGGATACTAAGAAAAGA
. : . : . : . : . : . :
rJMSF025D04+ AAAAAATAAAATTTTCTTTAAGGTAAAATAAGCATGGTATGAGTGTATGACAGTATGAGC
rJMSF032O09+ AAAAAATAAAATTTTCTTTAAGGTAAAATAAGCATGGTATGAGTGTATGACAGTATGAGC
____________________________________________________________
consensus AAAAAATAAAATTTTCTTTAAGGTAAAATAAGCATGGTATGAGTGTATGACAGTATGAGC
. : . : . : . : . : . :
rJMSF025D04+ TAGCTATGGCTATGGCATGTGAGCTTTCTTAATGTTTATTACCATCACATGACAAGCTT
rJMSF032O09+ TAGCTATGGCTATGGCATGTGAGCTTTCTTAATGTTTATTACCATCACATGACAAGCTTG
____________________________________________________________
consensus TAGCTATGGCTATGGCATGTGAGCTTTCTTAATGTTTATTACCATCACATGACAAGCTTG