| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040J06 | Sequence | 506 | 002328 (4) | emb|CDP14880.1| | 6e-71 | unnamed protein product [Coffea canephora] | 725 | 005733 (4) | ref|XP_009626986.1| | 3e-71 | PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Nicotiana tomentosiformis] |
| JMFS018H02 | Sequence | 588 | 005733 (4) | ref|XP_009799219.1| | 1e-59 | PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Nicotiana sylvestris] | |||||
| JMSF032J19 | Sequence | 673 | 002328 (4) | emb|CDP14880.1| | 4e-92 | unnamed protein product [Coffea canephora] | 744 | 005733 (4) | ref|XP_009626986.1| | 2e-72 | PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Nicotiana tomentosiformis] |
| JMSF033H01 | Sequence | 705 | 002328 (4) | emb|CDP14880.1| | 3e-112 | unnamed protein product [Coffea canephora] | 722 | 005733 (4) | ref|XP_009626986.1| | 2e-72 | PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF033H01+ GGAGGAGCGCCGCCGCAGCGTCG
rJMFF040J06+ TGGAGGAGCGCCGCCGCAGCGTCG
rJMSF032J19+ GGAGGAGCGCCGCCGCAGCGTCG
____________________________________________________________
consensus TGGAGGAGCGCCGCCGCAGCGTCG
. : . : . : . : . : . :
rJMSF033H01+ CGCTCAGCAGGCCGATGCCCGGGGTGACGTCGAAAGGCGCCGCCATTTCTTCCATGTCGG
rJMFF040J06+ CGCTCAGCAGGCCGATGCCCGGGGTGACGTCGAAAGGCGCCGCCATTTCTTCCATGTCGG
rJMSF032J19+ CGCTCAGCAGGCCGATGCCCGGGGTGACGTCGAAAGGCGCCGCCATTTCTTCCATGTCGG
____________________________________________________________
consensus CGCTCAGCAGGCCGATGCCCGGGGTGACGTCGAAAGGCGCCGCCATTTCTTCCATGTCGG
. : . : . : . : . : . :
rJMSF033H01+ CGCTGTGGTTGGTCCCCCAGCTCTCCCTGGCGGGGCTGGCGGAGGCGTTCACGGCCATCG
rJMFF040J06+ CGCTGTGGTTGGTCCCCCAGCTCTCCCTGGCGGGGCTGGCGGAGGCGTTCACGGCCATCG
JMFS018H02+ TGGTCCCCCAGCTCTCCCTGGCGGGGCTGGCGGAGGCGTTCACGGCCATCG
rJMSF032J19+ CGCTGTGGTTGGTCCCCCAGCTCTCCCTGGCGGGGCTGGCGGAGGCGTTCACGGCCATCG
____________________________________________________________
consensus CGCTGTGGTTGGTCCCCCAGCTCTCCCTGGCGGGGCTGGCGGAGGCGTTCACGGCCATCG
. : . : . : . : . : . :
rJMSF033H01+ GACAGGTGGAGTTTTACTACAAGCAGTTCCCGGAGAACATGAGAAGCGTCGCCGGGTCCT
rJMFF040J06+ GACAGGTGGAGTTTTACTACAAGCAGTTCCCGGAGAACATGAGAAGCGTCGCCGGGTCCT
JMFS018H02+ GACAGGTGGAGTTTTACTACAAGCAGTTCCCGGAGAACATGAGAAGCGTCGCCGGGTCCT
rJMSF032J19+ GACAGGTGGAGTTTTACTACAAGCAGTTCCCGGAGAACATGAGAAGCGTCGCCGGGTCCT
____________________________________________________________
consensus GACAGGTGGAGTTTTACTACAAGCAGTTCCCGGAGAACATGAGAAGCGTCGCCGGGTCCT
. : . : . : . : . : . :
rJMSF033H01+ TTTTCTTCTTGGGGATGGGGGCCTCCAGCTATCTCAACAGCTTCTTGATCTCCATTGTAC
rJMFF040J06+ TTTTCTTCTTGGGGATGGGGGCCTCCAGCTATCTCAACAGCTTCTTGATCTCCATTGTAC
JMFS018H02+ TTTTCTTCTTGGGGATTGGGGCCTCCAGCTATCTCAACAGCTTCTTGATCTCCATTGTAC
rJMSF032J19+ TTTTCTTCTTGGGGATGGGGGCCTCCAGCTATCTCAACAGCTTCTTGATCTCCATTGTAC
____________________________________________________________
consensus TTTTCTTCTTGGGGATGGGGGCCTCCAGCTATCTCAACAGCTTCTTGATCTCCATTGTAC
. : . : . : . : . : . :
rJMSF033H01+ ATAGAACCACAGAAAACGCCAAAACTGGAAACTGGTTGCCGGAAGATCTCAACAAGGGAA
rJMFF040J06+ ATAGAACCACAGAAAACGCCAAAACTGGAAACTGGTTGCGGGAAGATCTCAACAAGGGAA
JMFS018H02+ ATAGAACCACAGAAAACGCCAAAACTGGAAACTGGTTGCCGGAAGATCTCAACAAGGGAA
rJMSF032J19+ ATAGAACCACAGAAAACGCCAAAACTGGAAACTGGTTGCCGGAAGATCTCAACAAGGGAA
____________________________________________________________
consensus ATAGAACCACAGAAAACGCCAAAACTGGAAACTGGTTGCCGGAAGATCTCAACAAGGGAA
. : . : . : . : . : . :
rJMSF033H01+ GATTAGACTACTTCTATTTCATGATCACAGGCCTGGGAATCTTAAATGTTGTGTACTTCC
rJMFF040J06+ GATTAGACTACTTCTATTTCATGATCACAGGCCTGGGAATCTTAAATGTTGTGTACTTCC
JMFS018H02+ GATTAGACTACTTCTATTTCATGATCACAGGCCTGGGAATCTTAAATGTTGTGTACTTCC
rJMSF032J19+ GATTAGACTACTTCTATTTCATGATCACAGGCCTGGGAATCTTAAATGTTGTGTACTTCC
____________________________________________________________
consensus GATTAGACTACTTCTATTTCATGATCACAGGCCTGGGAATCTTAAATGTTGTGTACTTCC
. : . : . : . : . : . :
rJMSF033H01+ TAGTATTTTCCAGGTGGTATGAGTACAAGGATGGAACTGAAGGAGCCATTAAAGATACTG
rJMFF040J06+ TAGTATTTTCCAGGTGGTATGAGTACAAGGATGGAACTGAAGGAGCCATTAAAGATACTG
JMFS018H02+ TAGTATTTTCCAGGTGGTATGAGTACAAGGATGGAACTGAAGGAGCCATTAAAGATACTG
rJMSF032J19+ TAGTATTTTCCAGGTGGTATGAGTACAAGGATGGAACTGAAGGAGCCATTAAAGATACTG
____________________________________________________________
consensus TAGTATTTTCCAGGTGGTATGAGTACAAGGATGGAACTGAAGGAGCCATTAAAGATACTG
. : . : . : . : . : . :
rJMSF033H01+ AAATGGAACCAAAGAATCTTGACAACAAACATGCAGTTTAGTTTAAGATGGCTGTTGGAT
rJMFF040J06+ AAATGGAACCAAAGAATCTTGACAACAAACATGCAGTTTAGTTTAAGATGGCTGTTGGAT
JMFS018H02+ AAATGGAACCAAAGAATCTTGACAACAAACATGCAGTTTAGTTTAAGATGGCTGTTGGAT
rJMSF032J19+ AAATGGAACCAAAGAATCTTGACAACAAACATGCAGTTTAGTTTAAGATGGCTGTTGGAT
____________________________________________________________
consensus AAATGGAACCAAAGAATCTTGACAACAAACATGCAGTTTAGTTTAAGATGGCTGTTGGAT
. : . : . : . : . : . :
rJMSF033H01+ TCTGGTATAGGATAGTTTGAATCTGACAGTTAGTCAGTTATTGTCCCTTATCAAATGAGG
rJMFF040J06+ TCTGGTATAGGATAGTTTGAATCTGACAGTTAGTCAGTTATTGTCCCTTATCAAATGAGG
JMFS018H02+ TCTGGTATAGGATAGTTTGAATCTGACAGTTAGTCAGTTATTGTCCCTTATCAAATGAGG
rJMSF032J19+ TCTGGTATAGGATAGTTTGAATCTGACAGTTAGTCAGTTATTGTCCCTTATCAAATGAGG
____________________________________________________________
consensus TCTGGTATAGGATAGTTTGAATCTGACAGTTAGTCAGTTATTGTCCCTTATCAAATGAGG
. : . : . : . : . : . :
rJMSF033H01+ ATCTCTTATTAGGAATCATCATCAAGATTCCATTCTTAAACAATAAGTGACTTTGTTAGG
rJMFF040J06+ ATCTCTTATTAGGAATCATCATCAAGATTCCATTCTTAAACAATAAGTGACTTTGTTAGG
JMFS018H02+ ATCTCTTATTAGGAATC
rJMSF032J19+ ATCTCTTATTAGGAATCATCATCAAGATTCCATTCTTAAACAATAAGTGACTTTGTTAGG
____________________________________________________________
consensus ATCTCTTATTAGGAATCATCATCAAGATTCCATTCTTAAACAATAAGTGACTTTGTTAGG
. : . : . : . : . : . :
rJMSF033H01+ ATAGAACTTAACTATCCCATGTAAATTCTATTCTAACAAAATCACTTGCTGGTTAAGAAT
rJMFF040J06+ ATAGAACTTAACTATCCCATGTAAATTCTATTCTAACAAAATCACTTGCTGGTTAAGAAT
rJMSF032J19+ ATAGAACTTAACTATCCCATCTAAATTCTATTCTAACAAAATCACTTGCTGGTTAAGAAT
____________________________________________________________
consensus ATAGAACTTAACTATCCCATGTAAATTCTATTCTAACAAAATCACTTGCTGGTTAAGAAT
. : . : . : . : . : . :
rJMSF033H01+ GGAATCTTTATGATGATTCCTGATATTATGTGC
rJMFF040J06+ GGAATCTTTATGATGATTCCTGATATTATGTGC
rJMSF032J19+ GGAATCTTTATGATGATTCCTGATATTATGTGCATGTCACCCTGTATTAATAATGAATAT
____________________________________________________________
consensus GGAATCTTTATGATGATTCCTGATATTATGTGCATGTCACCCTGTATTAATAATGAATAT