Contig 005729:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031B01Sequence196012084 (2)676005729 (2)gb|AFK39458.1|2e-107unknown [Lotus japonicus]
JMSF034B12Sequence195012084 (2)734005729 (2)emb|CDP00114.1|2e-122unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF034B12+ TCGGTCATAAATCTGA
                      ____________________________________________________________
consensus TCGGTCATAAATCTGA
 
. : . : . : . : . : . :
rJMSF034B12+ GGTTTGTGGGCTGAAATGGTCTCATGATGACCGAGAACTGGCATCTGGTGGCAATGACAA
rJMSF031B01+ CTGGTGGCAATGACAA
                      ____________________________________________________________
consensus GGTTTGTGGGCTGAAATGGTCTCATGATGACCGAGAACTGGCATCTGGTGGCAATGACAA
 
. : . : . : . : . : . :
rJMSF034B12+ TCAGCTTTTGGTCTGGAATCTGCACTCCCAGCAGCCAACTTTGAGACTAACAGAGCACAC
rJMSF031B01+ TCAGCTTTTGGTCTGGAATCTGCACTCCCAGCAGCCAACTTTGAGACTAACAGAGCACAC
                      ____________________________________________________________
consensus TCAGCTTTTGGTCTGGAATCTGCACTCCCAGCAGCCAACTTTGAGACTAACAGAGCACAC
 
. : . : . : . : . : . :
rJMSF034B12+ TGCTGCTGTAAAAGCCATTACCTGGTCTCCTCACCAAAGTGGCCTTCTTGCATCAGGAGG
rJMSF031B01+ TGCTGCTGTAAAAGCCATTACCTGGTCTCCTCACCAAAGTGGCCTTCTTGCATCAGGAGG
                      ____________________________________________________________
consensus TGCTGCTGTAAAAGCCATTACCTGGTCTCCTCACCAAAGTGGCCTTCTTGCATCAGGAGG
 
. : . : . : . : . : . :
rJMSF034B12+ GGGAACTGCAGACCGCTGCATTCGCTTCTGGAACACCAGTAATGGCAATCAATTGAATAG
rJMSF031B01+ GGGAACTGCAGACCGCTGCATTCGCTTCTGGAACACCAGTAATGGCAATCAATTGAATAG
                      ____________________________________________________________
consensus GGGAACTGCAGACCGCTGCATTCGCTTCTGGAACACCAGTAATGGCAATCAATTGAATAG
 
. : . : . : . : . : . :
rJMSF034B12+ CGTGGATACTGGAAGCCAGGTCTGCAATCTCGCCTGGAGCAAAAATGTAAATGAAATAGT
rJMSF031B01+ CGTGGATACTGGAAGCCAGGTCTGCAATCTCGCCTGGAGCAAAAATGTAAATGAAATAGT
                      ____________________________________________________________
consensus CGTGGATACTGGAAGCCAGGTCTGCAATCTCGCCTGGAGCAAAAATGTAAATGAAATAGT
 
. : . : . : . : . : . :
rJMSF034B12+ TAGCACCCATGGATACTCCCAAAATCAAGTAATGGTGTGGAAGTATCCATCCATGTCCAA
rJMSF031B01+ TAGCACCCATGGATACTCCCAAAATCAATTAATGGTGTGGAAGTATCCATCCATGTCCAA
                      ____________________________________________________________
consensus TAGCACCCATGGATACTCCCAAAATCAATTAATGGTGTGGAAGTATCCATCCATGTCCAA
 
. : . : . : . : . : . :
rJMSF034B12+ GGTGGCAACTCTAACTGGCCACAGCTTGCGGGTACTTTACCTTGCTATGTCGCCCGATGG
rJMSF031B01+ GGTGGCAACTCTAACTGGCCACAGCTTGCGGGTACTTTACCTTGCTATGTCGCCCGATGG
                      ____________________________________________________________
consensus GGTGGCAACTCTAACTGGCCACAGCTTGCGGGTACTTTACCTTGCTATGTCGCCCGATGG
 
. : . : . : . : . : . :
rJMSF034B12+ TCAGACAATAGTGACTGGAGCTGGAGATGAGACTCTCAGGTTTTGGAATGTCTTCCNTTC
rJMSF031B01+ TCAGACAATAGTGACTGGAGCTGGAGATGAGACTCTCAGGTTTTGGAATGTCTTCCCTTC
                      ____________________________________________________________
consensus TCAGACAATAGTGACTGGAGCTGGAGATGAGACTCTCAGGTTTTGGAATGTCTTCCCTTC
 
. : . : . : . : . : . :
rJMSF034B12+ TGCAAAAACACCTGCACCGGTCAAAGACACAGGACTGTGGTCTCTAGGAAGAACACATAT
rJMSF031B01+ TGCAAAAACACCTGCACCGGTCAAAGACACAGGACTGTGGTCTCTAGGAAGAACACATAT
                      ____________________________________________________________
consensus TGCAAAAACACCTGCACCGGTCAAAGACACAGGACTGTGGTCTCTAGGAAGAACACATAT
 
. : . : . : . : . : . :
rJMSF034B12+ CAGATGACAGACAGACCGACCTTTCTCTGATTATATTTGTAAATTATAATACTTTCTCAT
rJMSF031B01+ CAGATGACAGACAGACCGACCTTTCTCTGATTATATTTGTAAATTATAATACTTTCTCAT
                      ____________________________________________________________
consensus CAGATGACAGACAGACCGACCTTTCTCTGATTATATTTGTAAATTATAATACTTTCTCAT
 
. : . : . : . : . : . :
rJMSF034B12+ GTTCTTCAGCTATGTCCAGATTGTGAAAGTGTATAGCTTGAAATGTTTTTTTATGTGGGT
rJMSF031B01+ GTTCTTCAGCTATGTCCAGATTGTGAAAGTGTATAGCTTGAAATGTTTTTTTATGTGGGT
                      ____________________________________________________________
consensus GTTCTTCAGCTATGTCCAGATTGTGAAAGTGTATAGCTTGAAATGTTTTTTTATGTGGGT
 
. : . : . : . : . : . :
rJMSF034B12+ TTTCAAGAAGATGTCTATAACTCTCAATTATTTTTTTTAGATGTGGAGTGTACCCAAT
rJMSF031B01+ TTTCAAGAAGATGTCTATAACTCTCAATTATTTTTTTTAGATGTGGAGTGTACCCAATTT
                      ____________________________________________________________
consensus TTTCAAGAAGATGTCTATAACTCTCAATTATTTTTTTTAGATGTGGAGTGTACCCAATTT