Contig 005724:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010P06Sequence594012845 (6)gb|ABB54381.2|1e-93FVE [Ipomoea nil]776005724 (6)gb|KCW53598.1|1e-112hypothetical protein EUGRSUZ_J02866 [Eucalyptus grandis]
JMFF041E02Sequence644012845 (6)ref|XP_010242216.1|4e-113PREDICTED: WD-40 repeat-containing protein MSI4-like [Nelumbo nucifera]614005724 (6)ref|XP_009762754.1|3e-71PREDICTED: WD-40 repeat-containing protein MSI4-like, partial [Nicotiana sylves
JMFF046K13Sequence618012845 (6)ref|XP_008228297.1|6e-111PREDICTED: WD-40 repeat-containing protein MSI4-like [Prunus mume]535005724 (6)gb|KCW53598.1|4e-54hypothetical protein EUGRSUZ_J02866 [Eucalyptus grandis]
JMFF049E05Sequence529012845 (6)gb|ABB54381.2|4e-93FVE [Ipomoea nil]540005724 (6)gb|KCW53598.1|2e-43hypothetical protein EUGRSUZ_J02866 [Eucalyptus grandis]
JMSF030J04Sequence654012845 (6)ref|XP_010242216.1|7e-115PREDICTED: WD-40 repeat-containing protein MSI4-like [Nelumbo nucifera]738005724 (6)gb|KCW53598.1|3e-80hypothetical protein EUGRSUZ_J02866 [Eucalyptus grandis]
JMSF034K08Sequence676012845 (6)ref|XP_010242216.1|3e-124PREDICTED: WD-40 repeat-containing protein MSI4-like [Nelumbo nucifera]782005724 (6)gb|KCW53598.1|3e-115hypothetical protein EUGRSUZ_J02866 [Eucalyptus grandis]

Alignment

This contig is upended


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rJMSF034K08+                                                        GGCATGAGGATACT
                      ____________________________________________________________
consensus                                                           GGCATGAGGATACT
 
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rJMSF034K08+          GNTGAAGACGTTCAGTTTGCCCTTCAAGTGCACAGGAGTTCTGTAGTGTTGGTGATGATT
rJMFF010P06+                                  CAAGTGCACAGGAGTTCTGTAGTGTTGGTGATGATT
                      ____________________________________________________________
consensus             GNTGAAGACGTTCAGTTTGCCCTTCAAGTGCACAGGAGTTCTGTAGTGTTGGTGATGATT
 
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rJMSF034K08+          CATGCTTAATATTGTGGGATGCAAGACGAGGTTCAGCTCCCGTCATGAAGGTTGAGAAGG
rJMFF010P06+          CATGCTTAATATTGTGGGATGCAAGACGAGGTTCAGCTCCCGTCATGAAGGTTGAGAAGG
                      ____________________________________________________________
consensus             CATGCTTAATATTGTGGGATGCAAGACGAGGTTCAGCTCCCGTCATGAAGGTTGAGAAGG
 
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rJMSF034K08+          CTCACAGTGCTGATCTCCATTGTGTTGATTGGAATCCATTTGATGTAAATCTTATCTTGA
rJMFF010P06+          CTCACAGTGCTGATCTCCATTGTGTTGATTGGAATCCATTTGATGTAAATCTTATCTTGA
rJMSF030J04+                                                   GATGTAAATCTTATCTTGA
                      ____________________________________________________________
consensus             CTCACAGTGCTGATCTCCATTGTGTTGATTGGAATCCATTTGATGTAAATCTTATCTTGA
 
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rJMSF034K08+          CTGGGTCTGCTGATAACACCGTCCGTATGTTTGACCGCCGTAAACTCACTTCTGGAGGAG
rJMFF010P06+          CTGGGTCTGCTGATAACACCGTCCGTATGTTTGACCGCCGTAAACTCACTTCTGGAGGAG
rJMFF041E02+                             CGTCCGTATGTTTGACCGCCGTAAACTCACTTCTGGAGGAG
rJMSF030J04+          CTGGGTCTGCTGATAACACCGTCCGTATGTTTGACCGCCGTAAACTCACTTCTGGAGGAG
                      ____________________________________________________________
consensus             CTGGGTCTGCTGATAACACCGTCCGTATGTTTGACCGCCGTAAACTCACTTCTGGAGGAG
 
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rJMSF034K08+          TAGGTTCTCCTATCCACATATTTGAAGGTCATTCTGCTGCTGTTCTATGTGTCCAGTGGT
rJMFF010P06+          TAGGTTCTCCTATCCACATATTTGAAGGTCATTCTGCTGCTGTTCTATGTGTCCAGTGGT
rJMFF041E02+          TAGGTTCTCCTATCCACATATTTGAAGGTCATTCTGCTGCTGTTCTATGTGTCCAGTGGT
rJMFF046K13+                                            TGCTGCTGTTCTATGTGTCCAGTGGT
rJMSF030J04+          TAGGTTCTCCTATCCACATATTTGAAGGTCATTCTGCTGCTGTTCTATGTGTCCAGTGGT
                      ____________________________________________________________
consensus             TAGGTTCTCCTATCCACATATTTGAAGGTCATTCTGCTGCTGTTCTATGTGTCCAGTGGT
 
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rJMSF034K08+          CTCCAGACAAGTCATCTGTCTTCGGAAGTTCTGCTGAGGATGGTATCTTGAATATCTGGG
rJMFF010P06+          CTCCAGACAAGTCATCTGTCTTCGGAAGTTCTGCTGAGGATGGTATCTTGAATATCTGGG
rJMFF041E02+          CTCCAGACAAGTCATCTGTCTTCGGAAGTTCTGCTGAGGATGGTATCTTGAATATCTGGG
rJMFF046K13+          CTCCAGACAAGTCATCTGTCTTCGGAAGTTCTGCTGAGGATGGTATCTTGAATATCTGGG
rJMFF049E05+                    GTCATCTGTCTTCGGAAGTTCTGCTGAGGATGGTATCTTGAATATCTGGG
rJMSF030J04+          CTCCAGACAAGTCATCTGTCTTCGGAAGTTCTGCTGAGGATGGTATCTTGAATATCTGGG
                      ____________________________________________________________
consensus             CTCCAGACAAGTCATCTGTCTTCGGAAGTTCTGCTGAGGATGGTATCTTGAATATCTGGG
 
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rJMSF034K08+          ATCATGAAAAGATTGGTAAGGAGGATCCTGGGAAAAAACCTCCAAATTCCCCTCAAGGCT
rJMFF010P06+          ATCATGAAAAGATTGGTAAGGAGGATCCTGGGAAAAAACCTCCAAATTCCCCTCAAGGCT
rJMFF041E02+          ATCATGAAAAGATTGGTAAGGAGGATCCTGGGAAAAAACCTCCAAATTCCCCTCAAGGCT
rJMFF046K13+          ATCATGAAAAGATTGGTAAGGAGGATCCTGGGAAAAAACCTCCAAATTCCCCTCAAGGCT
rJMFF049E05+          ATCATGAAAAGATTGGTAAGGAGGATCCTGNGAAAAAACCTCCAAATTCCCCTCAAGGCT
rJMSF030J04+          ATCATGAAAAGATTGGTAAGGAGGATCCTGGGAAAAAACCTCCAAATTCCCCTCAAGGCT
                      ____________________________________________________________
consensus             ATCATGAAAAGATTGGTAAGGAGGATCCTGGGAAAAAACCTCCAAATTCCCCTCAAGGCT
 
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rJMSF034K08+          TGTTTTTCCGTCATGCTGGACACAGGGATAAGGTGGTTGACTTCCATTGGAATGCATCAG
rJMFF010P06+          TGTTTTTCCGTCATGCTGGACACAGGGATAAGGTGGTTGACTTCCATTGGAATGCATCAG
rJMFF041E02+          TGTTTTTCCGTCATGCTGGACACAGGGATAAGGTGGTTGACTTCCATTGGAATGCATCAG
rJMFF046K13+          TGTTTTTCCGTCATGCTGGACACAGGGATAAGGTGGTTGACTTCCATTGGAATGCATCAG
rJMFF049E05+          TGTTTTTCCGTCATGCTGGACACAGGGATAAGGTGGTTGACTTCCATTGGAATGCATCAG
rJMSF030J04+          TGTTTTTCCGTCATGCTGGACACAGGGATAAGGTGGTTGACTTCCATTGGAATGCATCAG
                      ____________________________________________________________
consensus             TGTTTTTCCGTCATGCTGGACACAGGGATAAGGTGGTTGACTTCCATTGGAATGCATCAG
 
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rJMSF034K08+          ACCCGTGGACAATTGTTAGCGTCTCTGATGATGGTGAAAGCACTGGTGGAGGTGGCACTT
rJMFF010P06+          ACCCGTGGACAATTGTTAGCGTCTCTGATGATGGTGAAAGCACTGGTGGAGGTGGCACTT
rJMFF041E02+          ACCCGTGGACAATTGTTAGCGTCTCTGATGATGGTGAAAGCACTGGTGGAGGTGGCACTT
rJMFF046K13+          ACCCGTGGACAATTGTTAGCGTCTCTGATGATGGTGAAAGCACTGGTGGAGGTGGCACTT
rJMFF049E05+          ACCCGTGGACAATTGTTAGCGTCTCTGATGATGGTGAAAGCACTGGTGGAGGTGGCACTT
rJMSF030J04+          ACCCGTGGACAATTGTTAGCGTCTCTGATGATGGTGAAAGCACTGGTGGAGGTGGCACTT
                      ____________________________________________________________
consensus             ACCCGTGGACAATTGTTAGCGTCTCTGATGATGGTGAAAGCACTGGTGGAGGTGGCACTT
 
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rJMSF034K08+          TGCAGATATGGAGAATGATGGACATCATTTATAGGCCACAGGATGAGGTTATTACTGAGC
rJMFF010P06+          TGCAGATATGGAGAATGATGGACATCATTTATAGGCCACAGGATGAGGTTATTACTGAGC
rJMFF041E02+          TGCAGATATGGAGAATGATGGACATCATTTATAGGCCACAGGATGAGGTTATTACTGAGC
rJMFF046K13+          TGCAGATATGGAGAATGATGGACATCATTTATAGGCCACAGGATGAGGTTATTACTGAGC
rJMFF049E05+          TGCAGATATGGAGAATGATGGACATCATTTATAGGCCACAGGATGAGGTTATTACTGAGC
rJMSF030J04+          TGCAGATATGGAGAATGATGGACATCATTTATAGGCCACAGGATGAGGTTATTACTGAGC
                      ____________________________________________________________
consensus             TGCAGATATGGAGAATGATGGACATCATTTATAGGCCACAGGATGAGGTTATTACTGAGC
 
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rJMSF034K08+          TGGAGAAGTTCAAATCTCACCTGCTGACTTGCTCTTAATTTCGCCTACTTCTCTCCAGGG
rJMFF010P06+          TGGAGAAGTTCAAATCTCACCTGCTGACTTGCTCTTAATTTCGCCTACTTCTCTCCAGGG
rJMFF041E02+          TGGAGAAGTTCAAATCTCACCTGCTGACTTGCTCTTAATTTCGCCTACTTCTCTCCAGGG
rJMFF046K13+          TGGAGAAGTTCAAATCTCACCTGCTGACTTGCTCTTAATTTCGCCTACTTCTCTCCAGGG
rJMFF049E05+          TGGAGAAGTTCAAATCTCACCTGCTGACTTGCTCTTAATTTCGCCTACTTCTCTCCAGGG
rJMSF030J04+          TGGAGAAGTTCAAATCTCACCTGCTGACTTGCTCTTAATTTCGCCTACTTCTCTCCAGGG
                      ____________________________________________________________
consensus             TGGAGAAGTTCAAATCTCACCTGCTGACTTGCTCTTAATTTCGCCTACTTCTCTCCAGGG
 
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rJMSF034K08+          ATGAAAACTTGTAATTTATTTGGCTGATTTCAGATTCCTTAGTAAACTATATAACCCTTG
rJMFF010P06+          ATGAAAACTTGTAATTTATTTGGCTGATTTCAGATTCCTTAGTAAACTATATAA-CCTTG
rJMFF041E02+          ATGAAAACTTGTAATTTATTTGGCTGATTTCAGATTCCTTAGTAAACTATATAA-CCTTG
rJMFF046K13+          ATGAAAACTTGTAATTTATTTGGCTGATTTCAGATTCCTTAGTAAACTATATAA-CCTTG
rJMFF049E05+          ATGAAAACTTGTAATTTATTTGGCTGATTTCAGATTCCTTAGTAAACTATATAA-CCTTG
rJMSF030J04+          ATGAAAACTTGTAATTTATTTGGCTGATTTCAGATTCCTTAGTAAACTATATAA-CCTTG
                      ____________________________________________________________
consensus             ATGAAAACTTGTAATTTATTTGGCTGATTTCAGATTCCTTAGTAAACTATATAA-CCTTG
 
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rJMSF034K08+          GGGATTTATCTGTTCTGTAATCTCTAGATTCGAGACCTATCTACAAT             
rJMFF010P06+          GGGATTTATCTGTTCTGTAATCTCTAGATTCGAGACCTATCTACAATTGAACTCCTATAA
rJMFF041E02+          GGGATTTATCTGTTCTGTAATCTCTAGATTCGAGACCTATCTACAATTGAACTCCTATAA
rJMFF046K13+          GGGATTTATCTGTTCTGTAATCTCTAGATTCGAGACCTATCTACAATTGAACTCCTATAA
rJMFF049E05+          GGGATTTATCTGTTCTGTAATCTCTAGATTCGAGACCTATCTACAATTGAACTCCTATAA
rJMSF030J04+          GGGATTTATCTGTTCTGTAATCTCTAGATTCGAGACCTATCTACAATTGAACTCCTATAA
                      ____________________________________________________________
consensus             GGGATTTATCTGTTCTGTAATCTCTAGATTCGAGACCTATCTACAATTGAACTCCTATAA
 
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rJMFF010P06+          TGCCCTTATAATACAAGTCAA                                       
rJMFF041E02+          TGCCCTTATAATACAAGTCAAGTTTCTAGC                              
rJMFF046K13+          TGCCCTTATAATACAAGTCAAGTTTCTAGC                              
rJMFF049E05+          TGCCCTTATAATACAAGTCAAGTTTCTAGCAAA                           
rJMSF030J04+          TGCCCTTATAATACAAGTCAAGTTTCTAGCAAATTGGATGGCTAGCGAAGTAGCAAGTTG
                      ____________________________________________________________
consensus             TGCCCTTATAATACAAGTCAAGTTTCTAGCAAATTGGATGGCTAGCGAAGTAGCAAGTTG
 
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rJMSF030J04+          GTTTCTTGGGTTCAACACTGTAACAATTATATTGTGTGGGGTGGAGATTGCTGATCGCCA
                      ____________________________________________________________
consensus             GTTTCTTGGGTTCAACACTGTAACAATTATATTGTGTGGGGTGGAGATTGCTGATCGCCA