Contig 005722:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011H21Sequence288023145ref|XP_004229394.1|1e-19PREDICTED: vacuolar protein sorting-associated protein 51 homolog isoform X1 [S736005722 (3)ref|XP_006349191.1|2e-82PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Solanum tube
JMSF030H10Sequence681005722 (3)ref|XP_010322426.1|3e-93PREDICTED: vacuolar protein sorting-associated protein 51 homolog isoform X2 [S770005722 (3)ref|XP_006349191.1|2e-86PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Solanum tube

Alignment

This contig is upended


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JMSF030H10-                                                                    GAA
                      ____________________________________________________________
consensus                                                                      GAA
 
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JMSF030H10-           AATTGACCTTTTTTACTAAATAAATTTCATTGGTAGTTGGATGCAATAGGTAATGAAGTA
                      ____________________________________________________________
consensus             AATTGACCTTTTTTACTAAATAAATTTCATTGGTAGTTGGATGCAATAGGTAATGAAGTA
 
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JMSF030H10-           AAGCAGGTATTACCTGAAGGGCTTAATAGAAAACATCGACGTACTGACAGCAATGGAAGC
rJMSF011H21+                                TTAATAGAAAACATNGACGTACTGACAGCAATGGAAGC
rJMSF030H10+                    TACCTGAAGGGCTTAATAGAAAACATCGACGTACTGACAGCAATGGAAGC
                      ____________________________________________________________
consensus             AAGCAGGTATTACCTGAAGGGCTTAATAGAAAACATCGACGTACTGACAGCAATGGAAGC
 
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JMSF030H10-           ACTACTTCCTCACGCAGTAATCCGCTAAGAGATGATAGGTTGAGCCGGTCAAATACCCAG
rJMSF011H21+          ACTACTTCCTCACGCAGTAATCCGCTAAGAGATGATAGGTTGAGCCGGTCAAATACCCAG
rJMSF030H10+          ACTACTTCCTCACGCAGTAATCCGCTAAGAGATGATAGGTTGAGCCGGTCAAATACCCAG
                      ____________________________________________________________
consensus             ACTACTTCCTCACGCAGTAATCCGCTAAGAGATGATAGGTTGAGCCGGTCAAATACCCAG
 
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JMSF030H10-           AAAGCCAGGAGTCAGCTTCTGGAGACCCATCTAGCAAAATTGTTTAAGCAAAAAATGGAG
rJMSF011H21+          AAAGCCAGGAGTCAGCTTCTGGAGACCCATCTAGCAAAATTGTTTAAGCAAAAAATGGAG
rJMSF030H10+          AAAGCCAGGAGTCAGCTTCTGGAGACCCATCTAGCAAAATTGTTTAAGCAAAAAATGGAG
                      ____________________________________________________________
consensus             AAAGCCAGGAGTCAGCTTCTGGAGACCCATCTAGCAAAATTGTTTAAGCAAAAAATGGAG
 
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JMSF030H10-           ATCTTTACCAAAGTTGAACACACACAGGAATCAGTTATGACTACTATAGTCAAACTTTGC
rJMSF011H21+          ATCTTTACCAAAGTTGAACACACACAGGAATCAGTTATGACTACTATAGTCAAACTTTGC
rJMSF030H10+          ATCTTTACCAAAGTTGAACACACACAGGAATCAGTTATGACTACTATAGTCAAACTTTGC
                      ____________________________________________________________
consensus             ATCTTTACCAAAGTTGAACACACACAGGAATCAGTTATGACTACTATAGTCAAACTTTGC
 
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JMSF030H10-           TTGAAAAGTTTGCAAGAGTTTGCCCGACTTCAGACATTCAACCGTAGTGGATTTCAGCAA
rJMSF011H21+          TTGAAAAGTTTGCAAGAGTTTGCCCGACTTCAGACATTCAACCGTAGTGGATTTCAGCAA
rJMSF030H10+          TTGAAAAGTTTGCAAGAGTTTGCCCGACTTCAGACATTCAACCGTAGTGGATTTCAGCAA
                      ____________________________________________________________
consensus             TTGAAAAGTTTGCAAGAGTTTGCCCGACTTCAGACATTCAACCGTAGTGGATTTCAGCAA
 
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JMSF030H10-           ATTCAGTTGGACTTCCATTTTCTGAAGACTTCTCTAAAGAATGCTGCTGAAGATGAAGCT
rJMSF011H21+          ATTCAGTTGGACTTCCATTTTCTGAAGACTTCTCTAAAGAATGCTGCTGAAGATGAAGCT
rJMSF030H10+          ATTCAGTTGGACTTCCATTTTCTGAAGACTTCTCTAAAGAATGCTGCTGAAGATGAAGCT
                      ____________________________________________________________
consensus             ATTCAGTTGGACTTCCATTTTCTGAAGACTTCTCTAAAGAATGCTGCTGAAGATGAAGCT
 
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JMSF030H10-           GCCGTGGACTTCTTACTCGACGAGGTCATTGTTGCTGCTGCAGAGCGGTGTATTGATCCC
rJMSF011H21+          GCCGTGGACTTCTTACTCGACGAGGTCATTGTTGCTGCTGCAGAGCGGTGTATTGATCCC
rJMSF030H10+          GCCGTGGACTTCTTACTCGACGAGGTCATTGTTGCTGCTGCAGAGCGGTGTATTGATCCC
                      ____________________________________________________________
consensus             GCCGTGGACTTCTTACTCGACGAGGTCATTGTTGCTGCTGCAGAGCGGTGTATTGATCCC
 
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JMSF030H10-           GTTCCTTTGGAACCCGCGATACTGGACAAACTTGTCCAAGTGAAGTTGGCGAAGATTTGA
rJMSF011H21+          GTTCCTTTGGAACCCGCGATACTGGACAAACTTGTCCAAGTGAAGTTGGCGAAGATTTGA
rJMSF030H10+          GTTCCTTTGGAACCCGCGATACTGGACAAACTTGTCCAAGTGAAGTTGGCGAAGATTTGA
                      ____________________________________________________________
consensus             GTTCCTTTGGAACCCGCGATACTGGACAAACTTGTCCAAGTGAAGTTGGCGAAGATTTGA
 
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JMSF030H10-           GAGCTTCTAACTCCAAGATAAGAGTATCAGTTGCAAGATGACAGTTTTGGTGTAGATTGC
rJMSF011H21+          GAGCTTCTAACTCCAAGATAAGAGTATCAGTTGCAAGATGACAGTTTTGGTGTAGATTGC
rJMSF030H10+          GAGCTTCTAACTCCAAGATAAGAGTATCAGTTGCAAGATGACAGTTTTGGTGTAGATTGC
                      ____________________________________________________________
consensus             GAGCTTCTAACTCCAAGATAAGAGTATCAGTTGCAAGATGACAGTTTTGGTGTAGATTGC
 
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JMSF030H10-           CTGACTTTCTTCCCCTATAGCATCCAAGTCTCTGAAGCTCTCTCTGCCTATAATCCTCCA
rJMSF011H21+          CTGACTTTCTTCCCCTATAGCATCCAAGTCTCTGAAGCTCTCTCTGCCTATAATCCTCCA
rJMSF030H10+          CTGACTTTCTTCCCCTATAGCATCCAAGTCTCTGAAGCTCTCTCTGCCTATAATCCTCCA
                      ____________________________________________________________
consensus             CTGACTTTCTTCCCCTATAGCATCCAAGTCTCTGAAGCTCTCTCTGCCTATAATCCTCCA
 
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JMSF030H10-           GATTCCAGCTGAAGCTTT                                          
rJMSF011H21+          GATTCCAGCTGAAGCTTTTTGTCTCAATTTTCAGGATTTTATTGTCTCATCACATAGCAA
rJMSF030H10+          GATTCCAGCTGAAGCTTTTTGTCTCAATTTTCAGGATTTTATTGTCTCATCACATAGCAA
                      ____________________________________________________________
consensus             GATTCCAGCTGAAGCTTTTTGTCTCAATTTTCAGGATTTTATTGTCTCATCACATAGCAA
 
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rJMSF011H21+          CTTCAGTTATCATTCTGTGATTTTCATTGATATAAAGGGCCACTGTATAGAATCATAATG
rJMSF030H10+          CTTCAGTTATCATTCTGTGATTTTCATTGATATAAAGGGCCACTGTATAGAATCATAATG
                      ____________________________________________________________
consensus             CTTCAGTTATCATTCTGTGATTTTCATTGATATAAAGGGCCACTGTATAGAATCATAATG
 
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rJMSF011H21+          TACTCTCATGCTTTCCAATTCAACAGCCACAACAAACA                      
rJMSF030H10+          TACTCTCATGCTTTCCAATTCAACAGCCACAACAAACATTATTCGAGGATTAAAGAGATT
                      ____________________________________________________________
consensus             TACTCTCATGCTTTCCAATTCAACAGCCACAACAAACATTATTCGAGGATTAAAGAGATT