Contig 005721:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030F23Sequence682000459 (13)ref|XP_006342676.1|2e-50PREDICTED: TMV resistance protein N-like [Solanum tuberosum]688005721 (2)ref|XP_002522452.1|6e-07nucleic acid binding protein, putative [Ricinus communis] gb|EEF39944.1| nucleic
JMSF046H06Sequence692000459 (13)ref|XP_006342676.1|2e-50PREDICTED: TMV resistance protein N-like [Solanum tuberosum]789005721 (2)ref|XP_004508183.1|2e-08PREDICTED: topless-related protein 2-like [Cicer arietinum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF046H06+ ATTGTAGCGC
                      ____________________________________________________________
consensus ATTGTAGCGC
 
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rJMSF046H06+ ATCCACAAGAGCCCAACCAACTTGCATTTGGATTGACAGATGGGTCTATTAAAGTTATTG
                      ____________________________________________________________
consensus ATCCACAAGAGCCCAACCAACTTGCATTTGGATTGACAGATGGGTCTATTAAAGTTATTG
 
. : . : . : . : . : . :
rJMSF046H06+ AACCATTGGAATCCGGAGGGGAGTGGGGAATATCTAGACATAGCCAAGATAAGATCGTGG
rJMSF030F23+ TCTAGACATAGCCAAGATAAGATCGTGG
                      ____________________________________________________________
consensus AACCATTGGAATCCGGAGGGGAGTGGGGAATATCTAGACATAGCCAAGATAAGATCGTGG
 
. : . : . : . : . : . :
rJMSF046H06+ CTGAATAGAGGACTCGAGATAGCTTCGCAATGTCTGGCAATCCGTGTAGATTTGGACCGA
rJMSF030F23+ CTGAATAGAGGACTCGAGATAGCTTCGCAATGTCTGGCAATCCGTGTAGATTTGGACCGA
                      ____________________________________________________________
consensus CTGAATAGAGGACTCGAGATAGCTTCGCAATGTCTGGCAATCCGTGTAGATTTGGACCGA
 
. : . : . : . : . : . :
rJMSF046H06+ TTCTTCTCCTCGCTGTTTGAGCCATGATAAAGCTTCCTTACATGCTAGAGTCTCAGCCAT
rJMSF030F23+ TTCTTCTCCTCGCTGTTTGAGCCATGATAAAGCTTCCTTACATGCTAGAGTCTCAGCCAT
                      ____________________________________________________________
consensus TTCTTCTCCTCGCTGTTTGAGCCATGATAAAGCTTCCTTACATGCTAGAGTCTCAGCCAT
 
. : . : . : . : . : . :
rJMSF046H06+ AAGGGGTGAGAAACAAGTTTGTGGTGGCACGCAGTAGGCCGATACATAAGCTCCAATATG
rJMSF030F23+ AAGGGGTGAGAAACAAGTTTGTGGTGGCACGCAGTAGGCCGATACATAAGCTCCAATATG
                      ____________________________________________________________
consensus AAGGGGTGAGAAACAAGTTTGTGGTGGCACGCAGTAGGCCGATACATAAGCTCCAATATG
 
. : . : . : . : . : . :
rJMSF046H06+ GTCTCGTAATAGAACTCCGGTTGTAGCTTTCATCAAGACGGCATCGTATCCTGCATCTAT
rJMSF030F23+ GTCTCGTAATAGAACTCCGGTTGTAGCTTTCATCAAGACGGCATCGTATCCTGCATCTAT
                      ____________________________________________________________
consensus GTCTCGTAATAGAACTCCGGTTGTAGCTTTCATCAAGACGGCATCGTATCCTGCATCTAT
 
. : . : . : . : . : . :
rJMSF046H06+ AAAGCATTGTTTCGGATATATAGGGCCGTCCGGCAGTAGTGTTGACGTGGGCGGGGCTGG
rJMSF030F23+ AAAGCATTGTTTCGGATATATAGGGCCGTCCGGCAGTAGTGTTGACGTGGGCGGGGCTGG
                      ____________________________________________________________
consensus AAAGCATTGTTTCGGATATATAGGGCCGTCCGGCAGTAGTGTTGACGTGGGCGGGGCTGG
 
. : . : . : . : . : . :
rJMSF046H06+ CACGGCAGTGGTGGCAATAGCGGAGACCGGCAGTATCGCAGTAGGCGCTACTGTTGACGT
rJMSF030F23+ CACGGCAGTGGTGGCAATAGCGGAGACCGGCAGTATCGCAGTAGGCGCTACTGTTGACGT
                      ____________________________________________________________
consensus CACGGCAGTGGTGGCAATAGCGGAGACCGGCAGTATCGCAGTAGGCGCTACTGTTGACGT
 
. : . : . : . : . : . :
rJMSF046H06+ CGGCAGGGCTGGGACGGCGTTGGCGGCAGTAACGGAGGCCGGCAGTATCCCGGCAGCATG
rJMSF030F23+ CGGCAGGGCTGGGACGGCGTTGGCGGCAGTAACGGAGGCCGGCAGTATCCCGGCAGCATG
                      ____________________________________________________________
consensus CGGCAGGGCTGGGACGGCGTTGGCGGCAGTAACGGAGGCCGGCAGTATCCCGGCAGCATG
 
. : . : . : . : . : . :
rJMSF046H06+ GTGTGTGGCAGTGGGCATCTCGGTCGGCAGTGCTACCGGCGGTTGTTTGGCATGTAGTGA
rJMSF030F23+ GTGTGTGGCAGTGGGCATCTCGGTCGGCAGTGCTACCGGCGGTTGTTTGGCATGTAGTGA
                      ____________________________________________________________
consensus GTGTGTGGCAGTGGGCATCTCGGTCGGCAGTGCTACCGGCGGTTGTTTGGCATGTAGTGA
 
. : . : . : . : . : . :
rJMSF046H06+ TTGCCATGTATTCTTCATAGATAGAGTTGCTAATACAACCCTCTTTGGTAATTGTAGGCT
rJMSF030F23+ TTGCCATGTATTCTTCATAGATAGAGTTGCTAATACAACCCTCTTTGGTAATTGTAGGCT
                      ____________________________________________________________
consensus TTGCCATGTATTCTTCATAGATAGAGTTGCTAATACAACCCTCTTTGGTAATTGTAGGCT
 
. : . : . : . : . : . :
rJMSF046H06+ TGCATCCCATACCGCTCCGTTTCGGGCTCTCCAAATATTGTATAAAATTCCAGCTGCAAA
rJMSF030F23+ TGCATCCCATACCGCTCCGTTTCGGGCTCTCCAAATATTGTATAAAATTCCAGCTGCAAA
                      ____________________________________________________________
consensus TGCATCCCATACCGCTCCGTTTCGGGCTCTCCAAATATTGTATAAAATTCCAGCTGCAAA
 
. : . : . : . : . : . :
rJMSF046H06+ CAACATTTCATTAGAGTCTAGAACATTCATAATTGTCCTAAACCATTCATGAAAAATAT
rJMSF030F23+ CAACATTTCATTAGAGTCTAGAACATTCATAATTGTCCTAAACCATTCATGAAAAATATT
                      ____________________________________________________________
consensus CAACATTTCATTAGAGTCTAGAACATTCATAATTGTCCTAAACCATTCATGAAAAATATT