| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF013N19 | Sequence | 464 | 009396 (6) | ref|XP_009758434.1| | 6e-07 | PREDICTED: dof zinc finger protein DOF2.1-like isoform X1 [Nicotiana sylvestris | 694 | 005716 (4) | ref|XP_009598584.1| | 4e-12 | PREDICTED: dof zinc finger protein DOF2.1-like [Nicotiana tomentosiformis] |
| JMSF017M07 | Sequence | 446 | 009396 (6) | 708 | 005716 (4) | ref|XP_009598584.1| | 3e-12 | PREDICTED: dof zinc finger protein DOF2.1-like [Nicotiana tomentosiformis] | |||
| JMSF028P05 | Sequence | 659 | 009396 (6) | ref|XP_009598584.1| | 1e-50 | PREDICTED: dof zinc finger protein DOF2.1-like [Nicotiana tomentosiformis] | 670 | 005716 (4) | ref|XP_009598584.1| | 3e-19 | PREDICTED: dof zinc finger protein DOF2.1-like [Nicotiana tomentosiformis] |
| JMSF029J09 | Sequence | 599 | 009396 (6) | ref|XP_009758434.1| | 2e-42 | PREDICTED: dof zinc finger protein DOF2.1-like isoform X1 [Nicotiana sylvestris | 672 | 005716 (4) | ref|XP_009598584.1| | 1e-08 | PREDICTED: dof zinc finger protein DOF2.1-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF028P05+ GGGCCTCACATTCGCGAGCTTGCAGAAACAAGCGGATGGGAATCTAGGGTTGGAA
____________________________________________________________
consensus GGGCCTCACATTCGCGAGCTTGCAGAAACAAGCGGATGGGAATCTAGGGTTGGAA
. : . : . : . : . : . :
rJMSF028P05+ GACCACGACATGGCGGCGGCGCCGATGATGTGTAATCCCAATAATACCCTCTCTGATGTT
____________________________________________________________
consensus GACCACGACATGGCGGCGGCGCCGATGATGTGTAATCCCAATAATACCCTCTCTGATGTT
. : . : . : . : . : . :
rJMSF028P05+ CTTGGAAACTACGGCGCCGCCTCAGCCACCCCACACGGCTTTCTTGATTCCCTTAGGGGT
rJMSF013N19+ CTCAGCCACCCCACACGGCTTTCTTGATTCCCTTAGGGGT
rJMSF017M07+ GGCGCCGCCTCAGCCACCCCACACGGCTTTCTTGATTCCCTTAGGGGT
rJMSF029J09+ TCCCTTAGGGGT
____________________________________________________________
consensus CTTGGAAACTACGGCGCCGCCTCAGCCACCCCACACGGCTTTCTTGATTCCCTTAGGGGT
. : . : . : . : . : . :
rJMSF028P05+ ACCGGATTCCTCGAACCCCCAACAAACGGATTATTGTACCACAACAACAGCTTGCAGTAC
rJMSF013N19+ ACCGGATTCCTCGAACCCCCAACAAACGGATTATTGTACCACAACAACAGCTTGCAGTAC
rJMSF017M07+ ACCGGATTCCTCGAACCCCCAACAAACGGATTATTGTACCACAACAACAGCTTGCAGTAC
rJMSF029J09+ ACCGGATTCCTCGAACCCCCAACAAACGGATTATTGTACCACAACAACAGCTTGCAGTAC
____________________________________________________________
consensus ACCGGATTCCTCGAACCCCCAACAAACGGATTATTGTACCACAACAACAGCTTGCAGTAC
. : . : . : . : . : . :
rJMSF028P05+ TACGGGGCTGTGGGGGAAATGGGAATGCCGCCGTACGATGTTCACATGGGTGGTGGGGTG
rJMSF013N19+ TACGGGGCTGTGGGGGAAATGGGAATGCCGCCGTACGATGTTCACATGGGTGGTGGGGTG
rJMSF017M07+ TACGGGGCTGTGGGGGAAATGGGAATGCCGCCGTACGATGTTCACATGGGTGGTGGGGTG
rJMSF029J09+ TACGGGGCTGTGGGGGAAATGGGAATGCCGCCGTACGATGTTCACATGGGTGGTGGGGTG
____________________________________________________________
consensus TACGGGGCTGTGGGGGAAATGGGAATGCCGCCGTACGATGTTCACATGGGTGGTGGGGTG
. : . : . : . : . : . :
rJMSF028P05+ TCCACGTCAGCTGCCGTGAAGCAAGAGATGTATAGTAATGGAAGAGATAATAATGAAGGT
rJMSF013N19+ TCCACGTCAGCTGCCGTGAAGCAAGAGATGTATAGTAATGGAAGAGATAATAATGAAGGT
rJMSF017M07+ TCCACGTCAGCTGCCGTGAAGCAAGAGATGTATAGTAATGGAAGAGATAATAATGAAGGT
rJMSF029J09+ TCCACGTCAGCTGCCGTGAAGCAAGAGATGTATAGTAATGGAAGAGATAATAATGAAGGT
____________________________________________________________
consensus TCCACGTCAGCTGCCGTGAAGCAAGAGATGTATAGTAATGGAAGAGATAATAATGAAGGT
. : . : . : . : . : . :
rJMSF028P05+ GATGATGACAACAGGGTATTATGGGGATTTCCATGGCAACATGGAGGAGAAGGGAACATG
rJMSF013N19+ GATGATGACAACAGGGTATTATGGGGATTTCCATGGCAACATGGAGGAGAAGGGAACATG
rJMSF017M07+ GATGATGACAACAGGGTATTATGGGGATTTCCATGGCAACATGGAGGAGAAGGGAACATG
rJMSF029J09+ GATGATGACAACAGGGTATTATGGGGATTTCCATGGCAACATGGAGGAGAAGGGAACATG
____________________________________________________________
consensus GATGATGACAACAGGGTATTATGGGGATTTCCATGGCAACATGGAGGAGAAGGGAACATG
. : . : . : . : . : . :
rJMSF028P05+ AACATGGTTGTTGTTAATGATGTTGATTCAAGCAGACAAAACAGCTGCAATATTGGGTTT
rJMSF013N19+ AACATGGTTGTTGTTAATGATGTTGATTCAAGCAGACAAAACAGCTGCAATATTGGGTTT
rJMSF017M07+ AACATGGTTGTTGTTAATGATGTTGATTCAAGCAGACAAAACAGCTGCAATATTGGGTTT
rJMSF029J09+ AACATGGTTGTTGTTAATGATGTTGATTCAAGCAGACAAAACAGCTGCAATATTGGGTTT
____________________________________________________________
consensus AACATGGTTGTTGTTAATGATGTTGATTCAAGCAGACAAAACAGCTGCAATATTGGGTTT
. : . : . : . : . : . :
rJMSF028P05+ GGTTCTTCTTGGCATGGCCTTGTCAACAGCCCTCTCATGTAGAGTTTCATCATTACAACC
rJMSF013N19+ GGTTCTTCTTGGCATGGCCTTGTCAACAGCCCTCTCATGTAGAGTTTCATCATTACAACC
rJMSF017M07+ GGTTCTTCTTGGCATGGCCTTGTCAACAGCCCTCTCATGTAGAGTTTCATCATTACAACC
rJMSF029J09+ GGTTCTTCTTGGCATGGCCTTGTCAACAGCCCTCTCATGTAGAGTTTCATCATTACAACC
____________________________________________________________
consensus GGTTCTTCTTGGCATGGCCTTGTCAACAGCCCTCTCATGTAGAGTTTCATCATTACAACC
. : . : . : . : . : . :
rJMSF028P05+ CCTTCAGATCTTTCGGTTTTTGTTGCATACTGAACTGGTATCTGTATCCCCGCAAATATT
rJMSF013N19+ CCTTCAGATCTTTCGGTTTTTGTTGCATACTGAACTGGTATCTGTATCCCCGCAAATATT
rJMSF017M07+ CCTTCAGATCTTTCGGTTTTTGTTGCATACTGAACTGGTATCTGTATCCCCGCAAATATT
rJMSF029J09+ CCTTCAGATCTTTCGGTTTTTGTTGCATACTGAACTGGTATCTGTATCCCCGCAAATATT
____________________________________________________________
consensus CCTTCAGATCTTTCGGTTTTTGTTGCATACTGAACTGGTATCTGTATCCCCGCAAATATT
. : . : . : . : . : . :
rJMSF028P05+ TCAGTTCAAATCTTCGGTTTTTGTTGCATACTGAACTGGTATCTGCATCCCGCAAACTTC
rJMSF013N19+ TCAGTTCAAATCTTCGGTTTTTGTTGCATACTGAACTGGTATCTGCATCCCGCAAACTTC
rJMSF017M07+ TCAGTTCAAATCTTCGGTTTTTGTTGCATACTGAACTGGTATCTGCATCCCGCAAACTTC
rJMSF029J09+ TCAGTTCAAATCTTCGGTTTTTGTTGCATACTGAACTGGTATCTGCATCCCGCAAACTTC
____________________________________________________________
consensus TCAGTTCAAATCTTCGGTTTTTGTTGCATACTGAACTGGTATCTGCATCCCGCAAACTTC
. : . : . : . : . : . :
rJMSF028P05+ TGGCCCGAAATCCT
rJMSF013N19+ TGGCCCGAAATCCTTCTTCTTCAATCTCAAGGAAAGTGTGACATATTTCCATACATGGTA
rJMSF017M07+ TGGCCCGAAATCCTTCTTCTTCAATCTCAAGGAAAGTGTGACATATTTCCATACATGGTA
rJMSF029J09+ TGGCCCGAAATCCTTCTTCTTCAATCTCAAGGAAAGTGTGACATATTTCCATACATGGTA
____________________________________________________________
consensus TGGCCCGAAATCCTTCTTCTTCAATCTCAAGGAAAGTGTGACATATTTCCATACATGGTA
. : . : . : . : . : . :
rJMSF013N19+ TACCCTGCTATTGAGAATCTGAAAATGTGAACATGTTACATGCATGTGTCTGAAGACTAG
rJMSF017M07+ TACCCTGCTATTGAGAATCTGAAAATGTGAACATGTTACATGCATGTGTCTGAAGACTAG
rJMSF029J09+ TACCCTGCTATTGAGAATCTGAAAATGTGAACATGTTACATGCATGTGTCTGAAGACTAG
____________________________________________________________
consensus TACCCTGCTATTGAGAATCTGAAAATGTGAACATGTTACATGCATGTGTCTGAAGACTAG
. : . : . : . : . : . :
rJMSF013N19+ GTGAGAATTGAGGTTTAATTTCTCTACTTTCTATTTTAGAATTGTTCCAATATT
rJMSF017M07+ GTGAGAATTGAGGTTTAATTTCTCTACTTTCTATTTTAGAATTGTTCCAATATT
rJMSF029J09+ GTGAGAATTGAGGTTTAATTTCTCTACTTTCTATTTTAGAATTGTTCCAATATTTGATGG
____________________________________________________________
consensus GTGAGAATTGAGGTTTAATTTCTCTACTTTCTATTTTAGAATTGTTCCAATATTTGATGG