Contig 005712:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029D13Sequence682002296 (2)gb|KDO40349.1|6e-50hypothetical protein CISIN_1g046996mg, partial [Citrus sinensis]676005712 (2)
JMSF047L14Sequence679002296 (2)ref|XP_008382796.1|9e-51PREDICTED: putative NAC domain-containing protein 94 [Malus domestica]691005712 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L14+                              CAAAAGGGNGGGGGTGGATGACCACCANCCATNTNTGNCG
                      ____________________________________________________________
consensus                                 CAAAAGGGNGGGGGTGGATGACCACCANCCATNTNTGNCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L14+          NGNTNTNTCCAGACCAGCNGGGCNTNNGNNGNNGNNGNNGCNTNGTCNTNGTNTTNCNGG
                      ____________________________________________________________
consensus             NGNTNTNTCCAGACCAGCNGGGCNTNNGNNGNNGNNGNNGCNTNGTCNTNGTNTTNCNGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L14+          GGACCNGCNGCNGTTAAGAAGNTCCAGGAACCNTNGTTTTNGCNTTACCAGGTGGCGGAG
rJMSF029D13+                                                         CCAGGNGGCGGAG
                      ____________________________________________________________
consensus             GGACCNGCNGCNGTTAAGAAGNTCCAGGAACCNTNGTTTTNGCNTTACCAGGTGGCGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L14+          GAGAAGATAAGCGCAGAAACCAGCGNGAGTAGCAGCACNGAAGTCGGGANTTCGNTTGGC
rJMSF029D13+          GAGAAGATAAGCGCAGAAACCAGCGNGAGTAGCAGCNCNGAAGTNGGGANTTNGNTTGGC
                      ____________________________________________________________
consensus             GAGAAGATAAGCGCAGAAACCAGCGNGAGTAGCAGCACNGAAGTCGGGANTTCGNTTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L14+          CTCTCCAGCTACCAAAGCTNTTACGCCGCCGCCGCCGCGCCGCCCTCGGCGCCTTTNTTN
rJMSF029D13+          CTNTCCAGNTACCAAAGNTNNTANGCCGCNGCCGNCGCGCCGCCCTCGGCGCCTTTNTTN
                      ____________________________________________________________
consensus             CTCTCCAGCTACCAAAGCTNTTACGCCGCCGCCGCCGCGCCGCCCTCGGCGCCTTTNTTN
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L14+          TCCGCTTCCTCCTCCGCCGCCTCCGTCGACGACCTCCACAGGCTAGTCAACTCCCAACAA
rJMSF029D13+          TCCGCTTCCTCNTCCGCCGCCTCCGTCGACGACCTCCACAGGCTAGTCAACTCCCAACAA
                      ____________________________________________________________
consensus             TCCGCTTCCTCCTCCGCCGCCTCCGTCGACGACCTCCACAGGCTAGTCAACTCCCAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L14+          CAGATCTCCCTCCAACACCCCCAACTCTTCCAAACCCTCTCCTCCCCGTTCCCGCCGCCG
rJMSF029D13+          CAGATCTCCCTCCAACACCCCCAACTCTTCCAAACCCTCTCCTCCCCGTTCCCGCCGCCG
                      ____________________________________________________________
consensus             CAGATCTCCCTCCAACACCCCCAACTCTTCCAAACCCTCTCCTCCCCGTTCCCGCCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L14+          CCATTGCTGCACCCCCTCCCGCCGCAGCCCTTGGCGCTCCCGCCGGGATCTCTCCACCAG
rJMSF029D13+          CCATTGCTGCACCCCCTCCCGCCGCAGCCCTTGGCGCTCCCGCCGGGATCTCTCCACCAG
                      ____________________________________________________________
consensus             CCATTGCTGCACCCCCTCCCGCCGCAGCCCTTGGCGCTCCCGCCGGGATCTCTCCACCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L14+          GCTGCCGCCGCCGCCGCTTTCTCCGATAGACTGTGGGATTGGAGCTCAATGGGAGAACCA
rJMSF029D13+          GCTGCCGCCGCCGCCGCTTTCTCCGATAGACTGTGGGATTGGAGCTCAATGGGAGAACCA
                      ____________________________________________________________
consensus             GCTGCCGCCGCCGCCGCTTTCTCCGATAGACTGTGGGATTGGAGCTCAATGGGAGAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L14+          AGTAGAGACTATGGCGCTGGCAATCCATTCAGGTAACACTATTATTACATTCATGAAGAT
rJMSF029D13+          AGTAGAGACTATGGCGCTGGCAATCCATTCAAGTAACACTATTATTACATTCATGAAGAT
                      ____________________________________________________________
consensus             AGTAGAGACTATGGCGCTGGCAATCCATTCAGGTAACACTATTATTACATTCATGAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L14+          GATGAGATAAGTATTTTAATTTACATACTTAAAAATGTCCCACTGCACTAATTTATTTTC
rJMSF029D13+          GATGAGATAAGTATTTTAATTTACATACTTAAAAATGTCCCACTGCACTAATTTATTTTC
                      ____________________________________________________________
consensus             GATGAGATAAGTATTTTAATTTACATACTTAAAAATGTCCCACTGCACTAATTTATTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047L14+          GACTTTAATTTCAAAGACTTATCACACGTTATGATGATAATG                  
rJMSF029D13+          GACTTTAATTTCAAAGACTTATCACACGTTATGATGATAATGTAAAACTTCTCTAATAAT
                      ____________________________________________________________
consensus             GACTTTAATTTCAAAGACTTATCACACGTTATGATGATAATGTAAAACTTCTCTAATAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029D13+          AGTATCAATCAATTAAGGTGTTACGTTGCAGTTACTACTAGTATATGTTGATTAGGGTTT
                      ____________________________________________________________
consensus             AGTATCAATCAATTAAGGTGTTACGTTGCAGTTACTACTAGTATATGTTGATTAGGGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029D13+          TAGGTTTAATTAGTTGGAATATTGTAATAATGTTAACTCTTATTATTAGCTATCAACTTT
                      ____________________________________________________________
consensus             TAGGTTTAATTAGTTGGAATATTGTAATAATGTTAACTCTTATTATTAGCTATCAACTTT